Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00338 and MPMX19_00339 are separated by 716 nucleotides MPMX19_00339 and MPMX19_00340 are separated by 215 nucleotides
MPMX19_00338: MPMX19_00338 - Ribonuclease E, at 340,678 to 343,701
_00338
MPMX19_00339: MPMX19_00339 - hypothetical protein, at 344,418 to 345,917
_00339
MPMX19_00340: MPMX19_00340 - Penicillin-binding protein 1A, at 346,133 to 348,670
_00340
Position (kb) 344
345
346 Strain fitness (log2 ratio) -2
-1
0
1
2 at 344.123 kb on - strand at 344.229 kb on + strand at 344.229 kb on + strand at 344.230 kb on - strand at 344.301 kb on + strand at 344.301 kb on + strand at 344.301 kb on + strand at 344.301 kb on + strand at 344.301 kb on + strand at 344.345 kb on + strand at 344.345 kb on + strand at 344.345 kb on + strand at 344.345 kb on + strand at 344.345 kb on + strand at 344.347 kb on + strand at 344.347 kb on + strand at 344.347 kb on + strand at 344.347 kb on + strand at 344.347 kb on + strand at 344.347 kb on + strand at 344.347 kb on + strand at 344.347 kb on + strand at 344.347 kb on + strand at 344.347 kb on + strand at 344.347 kb on + strand at 344.347 kb on + strand at 344.347 kb on + strand at 344.347 kb on + strand at 344.347 kb on + strand at 344.347 kb on + strand at 344.347 kb on + strand at 344.347 kb on + strand at 344.347 kb on + strand at 345.941 kb on - strand at 346.038 kb on + strand at 346.038 kb on + strand at 346.038 kb on + strand at 346.038 kb on + strand at 346.038 kb on + strand at 346.038 kb on + strand at 346.038 kb on + strand at 346.038 kb on + strand at 346.038 kb on + strand at 346.038 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 344,123 - +1.0 344,229 + -0.2 344,229 + -0.1 344,230 - +0.6 344,301 + -2.0 344,301 + +0.6 344,301 + -2.1 344,301 + -0.2 344,301 + -1.9 344,345 + -0.3 344,345 + -1.9 344,345 + -0.7 344,345 + -1.0 344,345 + -1.2 344,347 + +1.0 344,347 + -0.6 344,347 + +0.5 344,347 + -1.3 344,347 + -2.6 344,347 + -0.4 344,347 + +2.6 344,347 + -1.4 344,347 + -0.4 344,347 + -0.6 344,347 + -0.7 344,347 + -1.4 344,347 + +0.0 344,347 + -0.4 344,347 + +0.5 344,347 + +0.7 344,347 + -2.4 344,347 + +0.3 344,347 + +0.3 345,941 - -0.5 346,038 + +0.7 346,038 + -0.0 346,038 + -0.1 346,038 + -0.8 346,038 + +0.9 346,038 + -1.1 346,038 + +1.2 346,038 + -0.9 346,038 + -0.2 346,038 + -1.1
Or see this region's nucleotide sequence