Strain Fitness in Methylophilus sp. DMC18 around GFF754

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF753 and GFF754 are separated by 26 nucleotidesGFF754 and GFF755 overlap by 4 nucleotidesGFF755 and GFF756 are separated by 41 nucleotides GFF753 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 827,878 to 828,948 GFF753 GFF754 - Chemoreceptor glutamine deamidase CheD, at 828,975 to 829,583 GFF754 GFF755 - Chemotaxis protein methyltransferase, at 829,580 to 830,479 GFF755 GFF756 - hypothetical protein, at 830,521 to 831,228 GFF756 Position (kb) 828 829 830Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 827.995 kb on - strand, within GFF753at 827.995 kb on - strand, within GFF753at 827.995 kb on - strand, within GFF753at 827.995 kb on - strand, within GFF753at 827.999 kb on + strand, within GFF753at 827.999 kb on + strand, within GFF753at 827.999 kb on + strand, within GFF753at 827.999 kb on + strand, within GFF753at 828.000 kb on - strand, within GFF753at 828.000 kb on - strand, within GFF753at 828.000 kb on - strand, within GFF753at 828.000 kb on - strand, within GFF753at 828.000 kb on - strand, within GFF753at 828.148 kb on + strand, within GFF753at 828.148 kb on + strand, within GFF753at 828.148 kb on + strand, within GFF753at 828.148 kb on + strand, within GFF753at 828.149 kb on - strand, within GFF753at 828.149 kb on - strand, within GFF753at 828.165 kb on + strand, within GFF753at 828.165 kb on + strand, within GFF753at 828.165 kb on + strand, within GFF753at 828.165 kb on + strand, within GFF753at 828.165 kb on + strand, within GFF753at 828.166 kb on - strand, within GFF753at 828.166 kb on - strand, within GFF753at 828.166 kb on - strand, within GFF753at 828.166 kb on - strand, within GFF753at 828.166 kb on - strand, within GFF753at 828.166 kb on - strand, within GFF753at 828.166 kb on - strand, within GFF753at 828.171 kb on + strand, within GFF753at 828.171 kb on + strand, within GFF753at 828.172 kb on - strand, within GFF753at 828.172 kb on - strand, within GFF753at 828.206 kb on + strand, within GFF753at 828.206 kb on + strand, within GFF753at 828.206 kb on + strand, within GFF753at 828.206 kb on + strand, within GFF753at 828.206 kb on + strand, within GFF753at 828.206 kb on + strand, within GFF753at 828.207 kb on - strand, within GFF753at 828.207 kb on - strand, within GFF753at 828.207 kb on - strand, within GFF753at 828.207 kb on - strand, within GFF753at 828.232 kb on + strand, within GFF753at 828.232 kb on + strand, within GFF753at 828.257 kb on + strand, within GFF753at 828.257 kb on + strand, within GFF753at 828.257 kb on + strand, within GFF753at 828.258 kb on - strand, within GFF753at 828.258 kb on - strand, within GFF753at 828.258 kb on - strand, within GFF753at 828.274 kb on + strand, within GFF753at 828.376 kb on + strand, within GFF753at 828.376 kb on + strand, within GFF753at 828.376 kb on + strand, within GFF753at 828.377 kb on - strand, within GFF753at 828.377 kb on - strand, within GFF753at 828.377 kb on - strand, within GFF753at 828.454 kb on - strand, within GFF753at 828.506 kb on - strand, within GFF753at 828.514 kb on - strand, within GFF753at 828.516 kb on + strand, within GFF753at 828.517 kb on - strand, within GFF753at 828.597 kb on - strand, within GFF753at 828.711 kb on + strand, within GFF753at 828.711 kb on + strand, within GFF753at 828.711 kb on + strand, within GFF753at 828.712 kb on - strand, within GFF753at 828.712 kb on - strand, within GFF753at 828.712 kb on - strand, within GFF753at 828.712 kb on - strand, within GFF753at 828.712 kb on - strand, within GFF753at 828.712 kb on - strand, within GFF753at 828.712 kb on - strand, within GFF753at 828.781 kb on + strand, within GFF753at 828.781 kb on + strand, within GFF753at 828.782 kb on - strand, within GFF753at 828.796 kb on + strand, within GFF753at 828.797 kb on - strand, within GFF753at 828.797 kb on - strand, within GFF753at 828.797 kb on - strand, within GFF753at 828.907 kb on + strandat 828.967 kb on - strandat 828.967 kb on - strandat 828.973 kb on + strandat 828.973 kb on + strandat 828.974 kb on - strandat 828.974 kb on - strandat 828.976 kb on + strandat 828.976 kb on + strandat 828.976 kb on + strandat 828.977 kb on - strandat 829.028 kb on - strandat 829.054 kb on + strand, within GFF754at 829.054 kb on + strand, within GFF754at 829.054 kb on + strand, within GFF754at 829.054 kb on + strand, within GFF754at 829.054 kb on + strand, within GFF754at 829.055 kb on - strand, within GFF754at 829.055 kb on - strand, within GFF754at 829.055 kb on - strand, within GFF754at 829.086 kb on + strand, within GFF754at 829.086 kb on + strand, within GFF754at 829.112 kb on - strand, within GFF754at 829.130 kb on + strand, within GFF754at 829.131 kb on - strand, within GFF754at 829.178 kb on - strand, within GFF754at 829.199 kb on + strand, within GFF754at 829.200 kb on - strand, within GFF754at 829.200 kb on - strand, within GFF754at 829.215 kb on - strand, within GFF754at 829.223 kb on + strand, within GFF754at 829.324 kb on + strand, within GFF754at 829.325 kb on - strand, within GFF754at 829.325 kb on - strand, within GFF754at 829.325 kb on - strand, within GFF754at 829.325 kb on - strand, within GFF754at 829.334 kb on - strand, within GFF754at 829.489 kb on + strand, within GFF754at 829.489 kb on + strand, within GFF754at 829.490 kb on - strand, within GFF754at 829.490 kb on - strand, within GFF754at 829.490 kb on - strand, within GFF754at 829.492 kb on + strand, within GFF754at 829.492 kb on + strand, within GFF754at 829.492 kb on + strand, within GFF754at 829.493 kb on - strand, within GFF754at 829.493 kb on - strand, within GFF754at 829.495 kb on + strand, within GFF754at 829.495 kb on + strand, within GFF754at 829.496 kb on - strand, within GFF754at 829.529 kb on + strandat 829.530 kb on - strandat 829.530 kb on - strandat 829.546 kb on + strandat 829.583 kb on + strandat 829.600 kb on + strandat 829.601 kb on - strandat 829.639 kb on + strandat 829.641 kb on + strandat 829.680 kb on + strand, within GFF755at 829.680 kb on + strand, within GFF755at 829.681 kb on - strand, within GFF755at 829.681 kb on - strand, within GFF755at 829.681 kb on - strand, within GFF755at 829.681 kb on - strand, within GFF755at 829.779 kb on + strand, within GFF755at 829.780 kb on - strand, within GFF755at 829.780 kb on - strand, within GFF755at 829.845 kb on - strand, within GFF755at 829.845 kb on - strand, within GFF755at 830.014 kb on + strand, within GFF755at 830.057 kb on - strand, within GFF755at 830.057 kb on - strand, within GFF755at 830.060 kb on - strand, within GFF755at 830.225 kb on - strand, within GFF755at 830.242 kb on + strand, within GFF755at 830.243 kb on - strand, within GFF755at 830.243 kb on - strand, within GFF755at 830.243 kb on - strand, within GFF755at 830.306 kb on - strand, within GFF755at 830.306 kb on - strand, within GFF755at 830.306 kb on - strand, within GFF755at 830.346 kb on + strand, within GFF755at 830.407 kb on + strandat 830.432 kb on - strandat 830.432 kb on - strandat 830.468 kb on + strandat 830.468 kb on + strandat 830.491 kb on - strandat 830.508 kb on + strandat 830.508 kb on + strandat 830.508 kb on + strandat 830.508 kb on + strandat 830.508 kb on + strandat 830.509 kb on - strandat 830.509 kb on - strandat 830.509 kb on - strandat 830.509 kb on - strandat 830.509 kb on - strandat 830.509 kb on - strandat 830.522 kb on + strandat 830.542 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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827,995 - GFF753 0.11 +0.4
827,995 - GFF753 0.11 -2.5
827,995 - GFF753 0.11 -1.1
827,995 - GFF753 0.11 -3.0
827,999 + GFF753 0.11 -0.7
827,999 + GFF753 0.11 +0.4
827,999 + GFF753 0.11 -1.1
827,999 + GFF753 0.11 +0.2
828,000 - GFF753 0.11 +0.1
828,000 - GFF753 0.11 +0.2
828,000 - GFF753 0.11 -0.9
828,000 - GFF753 0.11 -2.3
828,000 - GFF753 0.11 -1.1
828,148 + GFF753 0.25 +0.0
828,148 + GFF753 0.25 -0.8
828,148 + GFF753 0.25 -0.4
828,148 + GFF753 0.25 -1.4
828,149 - GFF753 0.25 +1.2
828,149 - GFF753 0.25 -0.6
828,165 + GFF753 0.27 -1.8
828,165 + GFF753 0.27 +0.0
828,165 + GFF753 0.27 -0.8
828,165 + GFF753 0.27 -0.9
828,165 + GFF753 0.27 +1.0
828,166 - GFF753 0.27 -0.3
828,166 - GFF753 0.27 -1.0
828,166 - GFF753 0.27 -0.2
828,166 - GFF753 0.27 -0.8
828,166 - GFF753 0.27 +0.1
828,166 - GFF753 0.27 +0.4
828,166 - GFF753 0.27 +0.0
828,171 + GFF753 0.27 -1.5
828,171 + GFF753 0.27 -0.3
828,172 - GFF753 0.27 +0.0
828,172 - GFF753 0.27 -1.4
828,206 + GFF753 0.31 -1.6
828,206 + GFF753 0.31 -0.7
828,206 + GFF753 0.31 -0.1
828,206 + GFF753 0.31 -0.4
828,206 + GFF753 0.31 -1.1
828,206 + GFF753 0.31 -1.1
828,207 - GFF753 0.31 -0.8
828,207 - GFF753 0.31 -0.6
828,207 - GFF753 0.31 -1.1
828,207 - GFF753 0.31 -0.1
828,232 + GFF753 0.33 -0.0
828,232 + GFF753 0.33 -0.4
828,257 + GFF753 0.35 -0.4
828,257 + GFF753 0.35 -0.8
828,257 + GFF753 0.35 -0.8
828,258 - GFF753 0.35 +0.2
828,258 - GFF753 0.35 -0.8
828,258 - GFF753 0.35 -0.8
828,274 + GFF753 0.37 -0.1
828,376 + GFF753 0.46 +0.3
828,376 + GFF753 0.46 +1.2
828,376 + GFF753 0.46 -0.6
828,377 - GFF753 0.47 -1.1
828,377 - GFF753 0.47 -0.5
828,377 - GFF753 0.47 -0.1
828,454 - GFF753 0.54 +0.1
828,506 - GFF753 0.59 -1.0
828,514 - GFF753 0.59 -2.3
828,516 + GFF753 0.60 -0.0
828,517 - GFF753 0.60 -0.8
828,597 - GFF753 0.67 +0.3
828,711 + GFF753 0.78 -1.3
828,711 + GFF753 0.78 +0.4
828,711 + GFF753 0.78 -0.4
828,712 - GFF753 0.78 -1.8
828,712 - GFF753 0.78 +0.4
828,712 - GFF753 0.78 -0.4
828,712 - GFF753 0.78 -0.2
828,712 - GFF753 0.78 -2.1
828,712 - GFF753 0.78 -1.4
828,712 - GFF753 0.78 -1.3
828,781 + GFF753 0.84 -1.5
828,781 + GFF753 0.84 -0.6
828,782 - GFF753 0.84 -0.4
828,796 + GFF753 0.86 -0.8
828,797 - GFF753 0.86 -0.3
828,797 - GFF753 0.86 -0.8
828,797 - GFF753 0.86 -1.5
828,907 + -0.6
828,967 - -0.0
828,967 - -0.6
828,973 + -2.6
828,973 + +0.2
828,974 - +0.4
828,974 - -0.8
828,976 + -0.1
828,976 + -0.8
828,976 + -1.1
828,977 - -1.4
829,028 - +0.4
829,054 + GFF754 0.13 +0.7
829,054 + GFF754 0.13 +0.5
829,054 + GFF754 0.13 -2.1
829,054 + GFF754 0.13 -0.3
829,054 + GFF754 0.13 -1.3
829,055 - GFF754 0.13 -2.1
829,055 - GFF754 0.13 +0.2
829,055 - GFF754 0.13 +0.8
829,086 + GFF754 0.18 -0.0
829,086 + GFF754 0.18 +1.2
829,112 - GFF754 0.22 -2.0
829,130 + GFF754 0.25 -2.0
829,131 - GFF754 0.26 -0.8
829,178 - GFF754 0.33 +0.1
829,199 + GFF754 0.37 +0.3
829,200 - GFF754 0.37 +0.2
829,200 - GFF754 0.37 +0.4
829,215 - GFF754 0.39 +1.8
829,223 + GFF754 0.41 -2.7
829,324 + GFF754 0.57 -0.3
829,325 - GFF754 0.57 -0.1
829,325 - GFF754 0.57 -0.2
829,325 - GFF754 0.57 -0.1
829,325 - GFF754 0.57 -0.4
829,334 - GFF754 0.59 -0.8
829,489 + GFF754 0.84 -0.8
829,489 + GFF754 0.84 -1.1
829,490 - GFF754 0.85 -0.1
829,490 - GFF754 0.85 -1.4
829,490 - GFF754 0.85 +0.0
829,492 + GFF754 0.85 -0.1
829,492 + GFF754 0.85 -1.4
829,492 + GFF754 0.85 -0.8
829,493 - GFF754 0.85 -0.6
829,493 - GFF754 0.85 -0.0
829,495 + GFF754 0.85 -0.5
829,495 + GFF754 0.85 -1.1
829,496 - GFF754 0.86 -0.3
829,529 + -0.8
829,530 - -1.0
829,530 - -0.3
829,546 + -2.7
829,583 + -0.5
829,600 + -0.6
829,601 - -1.6
829,639 + -0.6
829,641 + -0.4
829,680 + GFF755 0.11 -1.0
829,680 + GFF755 0.11 -1.9
829,681 - GFF755 0.11 +0.9
829,681 - GFF755 0.11 -2.0
829,681 - GFF755 0.11 -0.1
829,681 - GFF755 0.11 +1.0
829,779 + GFF755 0.22 +0.2
829,780 - GFF755 0.22 -2.0
829,780 - GFF755 0.22 -1.4
829,845 - GFF755 0.29 -0.4
829,845 - GFF755 0.29 +1.2
830,014 + GFF755 0.48 +1.0
830,057 - GFF755 0.53 -1.8
830,057 - GFF755 0.53 +1.2
830,060 - GFF755 0.53 -0.2
830,225 - GFF755 0.72 -0.8
830,242 + GFF755 0.74 -0.4
830,243 - GFF755 0.74 +0.2
830,243 - GFF755 0.74 -0.7
830,243 - GFF755 0.74 +0.6
830,306 - GFF755 0.81 -0.8
830,306 - GFF755 0.81 +1.2
830,306 - GFF755 0.81 -1.0
830,346 + GFF755 0.85 -0.8
830,407 + -0.1
830,432 - -0.2
830,432 - -1.0
830,468 + +0.3
830,468 + +0.9
830,491 - -0.1
830,508 + +0.8
830,508 + -1.1
830,508 + +0.2
830,508 + -0.3
830,508 + -1.0
830,509 - -0.3
830,509 - -1.1
830,509 - -0.6
830,509 - -1.7
830,509 - -1.5
830,509 - -0.4
830,522 + -1.4
830,542 - -0.4

Or see this region's nucleotide sequence