Strain Fitness in Methylophilus sp. DMC18 around GFF561

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF560 and GFF561 are separated by 38 nucleotidesGFF561 and GFF562 are separated by 20 nucleotidesGFF562 and GFF563 are separated by 19 nucleotides GFF560 - Flagellar hook protein FlgE, at 615,888 to 617,126 GFF560 GFF561 - Basal-body rod modification protein FlgD, at 617,165 to 617,836 GFF561 GFF562 - Flagellar basal-body rod protein FlgC, at 617,857 to 618,264 GFF562 GFF563 - Flagellar basal body rod protein FlgB, at 618,284 to 618,706 GFF563 Position (kb) 617 618Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 616.185 kb on - strand, within GFF560at 616.185 kb on - strand, within GFF560at 616.185 kb on - strand, within GFF560at 616.189 kb on + strand, within GFF560at 616.203 kb on - strand, within GFF560at 616.247 kb on + strand, within GFF560at 616.247 kb on + strand, within GFF560at 616.247 kb on + strand, within GFF560at 616.248 kb on - strand, within GFF560at 616.248 kb on - strand, within GFF560at 616.248 kb on - strand, within GFF560at 616.248 kb on - strand, within GFF560at 616.248 kb on - strand, within GFF560at 616.249 kb on + strand, within GFF560at 616.249 kb on + strand, within GFF560at 616.249 kb on + strand, within GFF560at 616.250 kb on - strand, within GFF560at 616.291 kb on + strand, within GFF560at 616.299 kb on - strand, within GFF560at 616.309 kb on + strand, within GFF560at 616.352 kb on + strand, within GFF560at 616.353 kb on - strand, within GFF560at 616.373 kb on + strand, within GFF560at 616.390 kb on + strand, within GFF560at 616.390 kb on + strand, within GFF560at 616.390 kb on + strand, within GFF560at 616.413 kb on - strand, within GFF560at 616.430 kb on + strand, within GFF560at 616.430 kb on + strand, within GFF560at 616.430 kb on + strand, within GFF560at 616.430 kb on + strand, within GFF560at 616.431 kb on - strand, within GFF560at 616.431 kb on - strand, within GFF560at 616.431 kb on - strand, within GFF560at 616.431 kb on - strand, within GFF560at 616.431 kb on - strand, within GFF560at 616.431 kb on - strand, within GFF560at 616.431 kb on - strand, within GFF560at 616.433 kb on - strand, within GFF560at 616.433 kb on - strand, within GFF560at 616.484 kb on + strand, within GFF560at 616.484 kb on + strand, within GFF560at 616.484 kb on + strand, within GFF560at 616.484 kb on + strand, within GFF560at 616.485 kb on - strand, within GFF560at 616.485 kb on - strand, within GFF560at 616.485 kb on - strand, within GFF560at 616.485 kb on - strand, within GFF560at 616.486 kb on + strand, within GFF560at 616.486 kb on + strand, within GFF560at 616.486 kb on + strand, within GFF560at 616.486 kb on + strand, within GFF560at 616.487 kb on - strand, within GFF560at 616.487 kb on - strand, within GFF560at 616.487 kb on - strand, within GFF560at 616.522 kb on + strand, within GFF560at 616.523 kb on - strand, within GFF560at 616.523 kb on - strand, within GFF560at 616.523 kb on - strand, within GFF560at 616.523 kb on - strand, within GFF560at 616.535 kb on + strand, within GFF560at 616.536 kb on - strand, within GFF560at 616.558 kb on + strand, within GFF560at 616.558 kb on + strand, within GFF560at 616.559 kb on - strand, within GFF560at 616.559 kb on - strand, within GFF560at 616.559 kb on - strand, within GFF560at 616.559 kb on - strand, within GFF560at 616.559 kb on - strand, within GFF560at 616.559 kb on - strand, within GFF560at 616.559 kb on - strand, within GFF560at 616.585 kb on + strand, within GFF560at 616.585 kb on + strand, within GFF560at 616.585 kb on + strand, within GFF560at 616.586 kb on - strand, within GFF560at 616.586 kb on - strand, within GFF560at 616.586 kb on - strand, within GFF560at 616.589 kb on + strand, within GFF560at 616.589 kb on + strand, within GFF560at 616.589 kb on + strand, within GFF560at 616.590 kb on - strand, within GFF560at 616.590 kb on - strand, within GFF560at 616.590 kb on - strand, within GFF560at 616.706 kb on + strand, within GFF560at 616.715 kb on + strand, within GFF560at 616.715 kb on + strand, within GFF560at 616.716 kb on - strand, within GFF560at 616.716 kb on - strand, within GFF560at 616.719 kb on + strand, within GFF560at 616.720 kb on - strand, within GFF560at 616.720 kb on - strand, within GFF560at 616.778 kb on + strand, within GFF560at 616.778 kb on + strand, within GFF560at 616.787 kb on + strand, within GFF560at 616.787 kb on + strand, within GFF560at 616.787 kb on + strand, within GFF560at 616.788 kb on - strand, within GFF560at 616.788 kb on - strand, within GFF560at 616.788 kb on - strand, within GFF560at 616.788 kb on - strand, within GFF560at 616.788 kb on - strand, within GFF560at 616.789 kb on + strand, within GFF560at 616.789 kb on + strand, within GFF560at 616.789 kb on + strand, within GFF560at 616.789 kb on + strand, within GFF560at 616.789 kb on + strand, within GFF560at 616.790 kb on - strand, within GFF560at 616.790 kb on - strand, within GFF560at 616.828 kb on + strand, within GFF560at 616.828 kb on + strand, within GFF560at 616.829 kb on - strand, within GFF560at 616.829 kb on - strand, within GFF560at 616.854 kb on - strand, within GFF560at 616.854 kb on - strand, within GFF560at 616.875 kb on + strand, within GFF560at 616.877 kb on + strand, within GFF560at 616.877 kb on + strand, within GFF560at 616.877 kb on + strand, within GFF560at 616.877 kb on + strand, within GFF560at 616.878 kb on - strand, within GFF560at 616.881 kb on + strand, within GFF560at 616.881 kb on + strand, within GFF560at 616.881 kb on + strand, within GFF560at 616.882 kb on - strand, within GFF560at 616.882 kb on - strand, within GFF560at 616.882 kb on - strand, within GFF560at 616.882 kb on - strand, within GFF560at 616.882 kb on - strand, within GFF560at 616.882 kb on - strand, within GFF560at 616.882 kb on - strand, within GFF560at 616.882 kb on - strand, within GFF560at 616.892 kb on + strand, within GFF560at 616.892 kb on + strand, within GFF560at 616.893 kb on - strand, within GFF560at 616.893 kb on - strand, within GFF560at 616.902 kb on - strand, within GFF560at 616.999 kb on + strand, within GFF560at 616.999 kb on + strand, within GFF560at 616.999 kb on + strand, within GFF560at 616.999 kb on + strand, within GFF560at 616.999 kb on + strand, within GFF560at 616.999 kb on + strand, within GFF560at 617.030 kb on + strandat 617.031 kb on - strandat 617.097 kb on + strandat 617.098 kb on - strandat 617.098 kb on - strandat 617.098 kb on - strandat 617.129 kb on + strandat 617.130 kb on - strandat 617.130 kb on - strandat 617.130 kb on - strandat 617.149 kb on + strandat 617.270 kb on + strand, within GFF561at 617.271 kb on - strand, within GFF561at 617.324 kb on - strand, within GFF561at 617.324 kb on - strand, within GFF561at 617.325 kb on + strand, within GFF561at 617.325 kb on + strand, within GFF561at 617.325 kb on + strand, within GFF561at 617.326 kb on - strand, within GFF561at 617.326 kb on - strand, within GFF561at 617.326 kb on - strand, within GFF561at 617.326 kb on - strand, within GFF561at 617.326 kb on - strand, within GFF561at 617.406 kb on - strand, within GFF561at 617.406 kb on - strand, within GFF561at 617.429 kb on - strand, within GFF561at 617.522 kb on - strand, within GFF561at 617.537 kb on + strand, within GFF561at 617.537 kb on + strand, within GFF561at 617.537 kb on + strand, within GFF561at 617.537 kb on + strand, within GFF561at 617.538 kb on - strand, within GFF561at 617.538 kb on - strand, within GFF561at 617.538 kb on - strand, within GFF561at 617.538 kb on - strand, within GFF561at 617.538 kb on - strand, within GFF561at 617.538 kb on - strand, within GFF561at 617.539 kb on + strand, within GFF561at 617.539 kb on + strand, within GFF561at 617.540 kb on - strand, within GFF561at 617.540 kb on - strand, within GFF561at 617.540 kb on - strand, within GFF561at 617.549 kb on + strand, within GFF561at 617.738 kb on - strand, within GFF561at 617.738 kb on - strand, within GFF561at 617.764 kb on + strand, within GFF561at 617.789 kb on - strandat 617.821 kb on + strandat 617.821 kb on + strandat 617.822 kb on - strandat 617.836 kb on + strandat 617.836 kb on + strandat 617.836 kb on + strandat 617.836 kb on + strandat 617.837 kb on - strandat 617.837 kb on - strandat 617.859 kb on - strandat 617.880 kb on + strandat 617.881 kb on - strandat 617.881 kb on - strandat 617.949 kb on + strand, within GFF562at 617.950 kb on - strand, within GFF562at 617.991 kb on + strand, within GFF562at 617.992 kb on - strand, within GFF562at 617.993 kb on + strand, within GFF562at 617.993 kb on + strand, within GFF562at 617.994 kb on - strand, within GFF562at 617.994 kb on - strand, within GFF562at 617.994 kb on - strand, within GFF562at 617.994 kb on - strand, within GFF562at 617.994 kb on - strand, within GFF562at 617.994 kb on - strand, within GFF562at 618.029 kb on + strand, within GFF562at 618.029 kb on + strand, within GFF562at 618.030 kb on - strand, within GFF562at 618.199 kb on - strand, within GFF562at 618.247 kb on + strandat 618.247 kb on + strandat 618.247 kb on + strandat 618.253 kb on - strandat 618.270 kb on + strandat 618.277 kb on + strandat 618.277 kb on + strandat 618.338 kb on + strand, within GFF563at 618.372 kb on + strand, within GFF563at 618.372 kb on + strand, within GFF563at 618.373 kb on - strand, within GFF563at 618.373 kb on - strand, within GFF563at 618.373 kb on - strand, within GFF563at 618.380 kb on - strand, within GFF563at 618.404 kb on - strand, within GFF563at 618.404 kb on - strand, within GFF563at 618.413 kb on + strand, within GFF563at 618.463 kb on - strand, within GFF563at 618.536 kb on - strand, within GFF563at 618.572 kb on - strand, within GFF563at 618.594 kb on + strand, within GFF563at 618.595 kb on - strand, within GFF563at 618.595 kb on - strand, within GFF563at 618.595 kb on - strand, within GFF563at 618.605 kb on - strand, within GFF563at 618.605 kb on - strand, within GFF563at 618.654 kb on - strand, within GFF563at 618.654 kb on - strand, within GFF563at 618.765 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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616,185 - GFF560 0.24 +0.2
616,185 - GFF560 0.24 -0.2
616,185 - GFF560 0.24 -0.3
616,189 + GFF560 0.24 -0.3
616,203 - GFF560 0.25 -1.4
616,247 + GFF560 0.29 -3.0
616,247 + GFF560 0.29 -0.5
616,247 + GFF560 0.29 -0.5
616,248 - GFF560 0.29 -2.4
616,248 - GFF560 0.29 +0.9
616,248 - GFF560 0.29 -1.7
616,248 - GFF560 0.29 -0.3
616,248 - GFF560 0.29 -0.1
616,249 + GFF560 0.29 -0.2
616,249 + GFF560 0.29 -1.1
616,249 + GFF560 0.29 -0.8
616,250 - GFF560 0.29 -1.1
616,291 + GFF560 0.33 -0.6
616,299 - GFF560 0.33 -1.8
616,309 + GFF560 0.34 -0.1
616,352 + GFF560 0.37 -0.5
616,353 - GFF560 0.38 -0.5
616,373 + GFF560 0.39 +0.2
616,390 + GFF560 0.41 -0.8
616,390 + GFF560 0.41 -0.8
616,390 + GFF560 0.41 -0.6
616,413 - GFF560 0.42 +0.1
616,430 + GFF560 0.44 -0.4
616,430 + GFF560 0.44 -0.4
616,430 + GFF560 0.44 +0.5
616,430 + GFF560 0.44 +0.2
616,431 - GFF560 0.44 +0.5
616,431 - GFF560 0.44 -0.3
616,431 - GFF560 0.44 -0.1
616,431 - GFF560 0.44 -0.3
616,431 - GFF560 0.44 -0.9
616,431 - GFF560 0.44 +0.4
616,431 - GFF560 0.44 -0.1
616,433 - GFF560 0.44 +0.1
616,433 - GFF560 0.44 +0.5
616,484 + GFF560 0.48 +0.8
616,484 + GFF560 0.48 -0.8
616,484 + GFF560 0.48 -2.4
616,484 + GFF560 0.48 -0.9
616,485 - GFF560 0.48 -1.5
616,485 - GFF560 0.48 -0.1
616,485 - GFF560 0.48 -0.5
616,485 - GFF560 0.48 -0.4
616,486 + GFF560 0.48 +0.0
616,486 + GFF560 0.48 -0.8
616,486 + GFF560 0.48 -0.6
616,486 + GFF560 0.48 -0.8
616,487 - GFF560 0.48 +1.5
616,487 - GFF560 0.48 -0.6
616,487 - GFF560 0.48 -0.1
616,522 + GFF560 0.51 +0.9
616,523 - GFF560 0.51 -0.4
616,523 - GFF560 0.51 +0.9
616,523 - GFF560 0.51 -0.8
616,523 - GFF560 0.51 +1.2
616,535 + GFF560 0.52 +0.5
616,536 - GFF560 0.52 -0.3
616,558 + GFF560 0.54 -0.4
616,558 + GFF560 0.54 -0.1
616,559 - GFF560 0.54 +0.5
616,559 - GFF560 0.54 -0.5
616,559 - GFF560 0.54 -0.4
616,559 - GFF560 0.54 -1.1
616,559 - GFF560 0.54 +0.1
616,559 - GFF560 0.54 -0.6
616,559 - GFF560 0.54 +1.4
616,585 + GFF560 0.56 -0.1
616,585 + GFF560 0.56 -0.0
616,585 + GFF560 0.56 -1.4
616,586 - GFF560 0.56 -0.2
616,586 - GFF560 0.56 +0.3
616,586 - GFF560 0.56 -0.6
616,589 + GFF560 0.57 -0.4
616,589 + GFF560 0.57 -1.0
616,589 + GFF560 0.57 +0.5
616,590 - GFF560 0.57 +0.4
616,590 - GFF560 0.57 -0.3
616,590 - GFF560 0.57 -0.5
616,706 + GFF560 0.66 -1.7
616,715 + GFF560 0.67 +1.2
616,715 + GFF560 0.67 -1.0
616,716 - GFF560 0.67 -0.9
616,716 - GFF560 0.67 -0.8
616,719 + GFF560 0.67 +0.7
616,720 - GFF560 0.67 -0.9
616,720 - GFF560 0.67 +0.4
616,778 + GFF560 0.72 -0.3
616,778 + GFF560 0.72 +1.1
616,787 + GFF560 0.73 -0.1
616,787 + GFF560 0.73 -2.1
616,787 + GFF560 0.73 +0.6
616,788 - GFF560 0.73 +0.1
616,788 - GFF560 0.73 -0.5
616,788 - GFF560 0.73 +0.0
616,788 - GFF560 0.73 +0.7
616,788 - GFF560 0.73 -0.5
616,789 + GFF560 0.73 -1.8
616,789 + GFF560 0.73 -0.6
616,789 + GFF560 0.73 -0.9
616,789 + GFF560 0.73 +0.7
616,789 + GFF560 0.73 +0.8
616,790 - GFF560 0.73 -1.4
616,790 - GFF560 0.73 -0.8
616,828 + GFF560 0.76 +0.8
616,828 + GFF560 0.76 -1.1
616,829 - GFF560 0.76 -0.4
616,829 - GFF560 0.76 -0.6
616,854 - GFF560 0.78 +0.8
616,854 - GFF560 0.78 +0.2
616,875 + GFF560 0.80 -0.6
616,877 + GFF560 0.80 -1.4
616,877 + GFF560 0.80 -0.3
616,877 + GFF560 0.80 +0.4
616,877 + GFF560 0.80 -0.1
616,878 - GFF560 0.80 -0.0
616,881 + GFF560 0.80 -1.1
616,881 + GFF560 0.80 +0.1
616,881 + GFF560 0.80 -0.0
616,882 - GFF560 0.80 -0.5
616,882 - GFF560 0.80 -2.0
616,882 - GFF560 0.80 -0.7
616,882 - GFF560 0.80 -1.1
616,882 - GFF560 0.80 -0.1
616,882 - GFF560 0.80 -1.0
616,882 - GFF560 0.80 +0.4
616,882 - GFF560 0.80 -0.8
616,892 + GFF560 0.81 -0.2
616,892 + GFF560 0.81 -0.3
616,893 - GFF560 0.81 -1.1
616,893 - GFF560 0.81 +0.6
616,902 - GFF560 0.82 -1.7
616,999 + GFF560 0.90 +0.2
616,999 + GFF560 0.90 -0.3
616,999 + GFF560 0.90 -1.6
616,999 + GFF560 0.90 -0.8
616,999 + GFF560 0.90 -0.0
616,999 + GFF560 0.90 +0.1
617,030 + +0.4
617,031 - +0.1
617,097 + +0.6
617,098 - -1.6
617,098 - -0.5
617,098 - -0.1
617,129 + -0.8
617,130 - +0.2
617,130 - -0.4
617,130 - -1.0
617,149 + +1.8
617,270 + GFF561 0.16 -0.8
617,271 - GFF561 0.16 -2.0
617,324 - GFF561 0.24 -0.4
617,324 - GFF561 0.24 -1.1
617,325 + GFF561 0.24 +1.1
617,325 + GFF561 0.24 +0.2
617,325 + GFF561 0.24 +0.6
617,326 - GFF561 0.24 +0.1
617,326 - GFF561 0.24 -0.8
617,326 - GFF561 0.24 -0.8
617,326 - GFF561 0.24 -0.7
617,326 - GFF561 0.24 -0.6
617,406 - GFF561 0.36 +0.2
617,406 - GFF561 0.36 -1.8
617,429 - GFF561 0.39 +0.9
617,522 - GFF561 0.53 -0.1
617,537 + GFF561 0.55 +0.2
617,537 + GFF561 0.55 +0.3
617,537 + GFF561 0.55 -0.1
617,537 + GFF561 0.55 -1.1
617,538 - GFF561 0.56 +0.0
617,538 - GFF561 0.56 -1.1
617,538 - GFF561 0.56 -0.8
617,538 - GFF561 0.56 -0.6
617,538 - GFF561 0.56 -0.4
617,538 - GFF561 0.56 -0.4
617,539 + GFF561 0.56 +0.7
617,539 + GFF561 0.56 -0.7
617,540 - GFF561 0.56 -0.5
617,540 - GFF561 0.56 -0.6
617,540 - GFF561 0.56 -0.5
617,549 + GFF561 0.57 +0.8
617,738 - GFF561 0.85 -0.6
617,738 - GFF561 0.85 -0.1
617,764 + GFF561 0.89 +0.9
617,789 - +0.2
617,821 + +0.8
617,821 + -0.8
617,822 - -0.1
617,836 + -0.4
617,836 + -0.2
617,836 + -0.1
617,836 + -1.1
617,837 - -0.0
617,837 - -0.6
617,859 - -0.5
617,880 + -0.4
617,881 - -1.7
617,881 - -0.1
617,949 + GFF562 0.23 +0.6
617,950 - GFF562 0.23 -0.8
617,991 + GFF562 0.33 +0.7
617,992 - GFF562 0.33 +1.2
617,993 + GFF562 0.33 +0.2
617,993 + GFF562 0.33 -0.4
617,994 - GFF562 0.34 +0.2
617,994 - GFF562 0.34 -0.2
617,994 - GFF562 0.34 +0.9
617,994 - GFF562 0.34 -1.4
617,994 - GFF562 0.34 +0.2
617,994 - GFF562 0.34 +0.3
618,029 + GFF562 0.42 -0.1
618,029 + GFF562 0.42 -1.4
618,030 - GFF562 0.42 +1.4
618,199 - GFF562 0.84 -0.0
618,247 + -1.1
618,247 + -0.3
618,247 + -0.5
618,253 - -0.6
618,270 + +0.2
618,277 + -1.1
618,277 + +1.5
618,338 + GFF563 0.13 -1.1
618,372 + GFF563 0.21 -1.1
618,372 + GFF563 0.21 -0.2
618,373 - GFF563 0.21 +0.2
618,373 - GFF563 0.21 +0.7
618,373 - GFF563 0.21 +0.2
618,380 - GFF563 0.23 -0.2
618,404 - GFF563 0.28 +0.2
618,404 - GFF563 0.28 -1.1
618,413 + GFF563 0.30 -0.2
618,463 - GFF563 0.42 +0.9
618,536 - GFF563 0.60 -0.2
618,572 - GFF563 0.68 -0.6
618,594 + GFF563 0.73 -0.3
618,595 - GFF563 0.74 +0.1
618,595 - GFF563 0.74 -0.4
618,595 - GFF563 0.74 -0.0
618,605 - GFF563 0.76 -0.6
618,605 - GFF563 0.76 -0.9
618,654 - GFF563 0.87 +0.4
618,654 - GFF563 0.87 -0.5
618,765 + +1.7

Or see this region's nucleotide sequence