Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1942 and GFF1943 are separated by 26 nucleotides GFF1943 and GFF1944 are separated by 205 nucleotides GFF1944 and GFF1945 are separated by 109 nucleotides GFF1945 and GFF1946 overlap by 4 nucleotides GFF1946 and GFF1947 are separated by 196 nucleotides
GFF1942 - Urease accessory protein UreF, at 592,527 to 593,225
GFF1942
GFF1943 - Urease accessory protein UreG, at 593,252 to 593,908
GFF1943
GFF1944 - hypothetical protein, at 594,114 to 594,677
GFF1944
GFF1945 - Ribonuclease VapC1, at 594,787 to 595,194
GFF1945
GFF1946 - hypothetical protein, at 595,191 to 595,445
GFF1946
GFF1947 - hypothetical protein, at 595,642 to 596,895
GFF1947
Position (kb) 594
595 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 593.167 kb on + strand at 593.203 kb on - strand at 593.203 kb on - strand at 593.262 kb on + strand at 593.262 kb on + strand at 593.262 kb on + strand at 593.263 kb on - strand at 593.263 kb on - strand at 593.263 kb on - strand at 593.263 kb on - strand at 593.263 kb on - strand at 593.394 kb on + strand, within GFF1943 at 593.394 kb on + strand, within GFF1943 at 593.394 kb on + strand, within GFF1943 at 593.394 kb on + strand, within GFF1943 at 593.394 kb on + strand, within GFF1943 at 593.394 kb on + strand, within GFF1943 at 593.394 kb on + strand, within GFF1943 at 593.394 kb on + strand, within GFF1943 at 593.395 kb on - strand, within GFF1943 at 593.395 kb on - strand, within GFF1943 at 593.395 kb on - strand, within GFF1943 at 593.395 kb on - strand, within GFF1943 at 593.395 kb on - strand, within GFF1943 at 593.396 kb on + strand, within GFF1943 at 593.396 kb on + strand, within GFF1943 at 593.396 kb on + strand, within GFF1943 at 593.396 kb on + strand, within GFF1943 at 593.396 kb on + strand, within GFF1943 at 593.396 kb on + strand, within GFF1943 at 593.396 kb on + strand, within GFF1943 at 593.396 kb on + strand, within GFF1943 at 593.396 kb on + strand, within GFF1943 at 593.396 kb on + strand, within GFF1943 at 593.397 kb on - strand, within GFF1943 at 593.397 kb on - strand, within GFF1943 at 593.397 kb on - strand, within GFF1943 at 593.397 kb on - strand, within GFF1943 at 593.397 kb on - strand, within GFF1943 at 593.397 kb on - strand, within GFF1943 at 593.398 kb on + strand, within GFF1943 at 593.398 kb on + strand, within GFF1943 at 593.398 kb on + strand, within GFF1943 at 593.398 kb on + strand, within GFF1943 at 593.398 kb on + strand, within GFF1943 at 593.398 kb on + strand, within GFF1943 at 593.398 kb on + strand, within GFF1943 at 593.398 kb on + strand, within GFF1943 at 593.399 kb on - strand, within GFF1943 at 593.399 kb on - strand, within GFF1943 at 593.399 kb on - strand, within GFF1943 at 593.399 kb on - strand, within GFF1943 at 593.399 kb on - strand, within GFF1943 at 593.399 kb on - strand, within GFF1943 at 593.399 kb on - strand, within GFF1943 at 593.422 kb on + strand, within GFF1943 at 593.422 kb on + strand, within GFF1943 at 593.422 kb on + strand, within GFF1943 at 593.423 kb on - strand, within GFF1943 at 593.423 kb on - strand, within GFF1943 at 593.423 kb on - strand, within GFF1943 at 593.423 kb on - strand, within GFF1943 at 593.426 kb on + strand, within GFF1943 at 593.427 kb on - strand, within GFF1943 at 593.427 kb on - strand, within GFF1943 at 593.427 kb on - strand, within GFF1943 at 593.427 kb on - strand, within GFF1943 at 593.515 kb on + strand, within GFF1943 at 593.515 kb on + strand, within GFF1943 at 593.515 kb on + strand, within GFF1943 at 593.515 kb on + strand, within GFF1943 at 593.516 kb on - strand, within GFF1943 at 593.516 kb on - strand, within GFF1943 at 593.516 kb on - strand, within GFF1943 at 593.516 kb on - strand, within GFF1943 at 593.663 kb on + strand, within GFF1943 at 593.663 kb on + strand, within GFF1943 at 593.663 kb on + strand, within GFF1943 at 593.664 kb on - strand, within GFF1943 at 593.664 kb on - strand, within GFF1943 at 593.740 kb on - strand, within GFF1943 at 593.751 kb on + strand, within GFF1943 at 593.752 kb on - strand, within GFF1943 at 593.840 kb on - strand, within GFF1943 at 593.906 kb on + strand at 593.906 kb on + strand at 593.906 kb on + strand at 593.906 kb on + strand at 593.921 kb on + strand at 593.921 kb on + strand at 593.921 kb on + strand at 593.958 kb on + strand at 593.958 kb on + strand at 593.958 kb on + strand at 593.958 kb on + strand at 593.959 kb on - strand at 593.965 kb on + strand at 593.966 kb on - strand at 594.001 kb on - strand at 594.025 kb on + strand at 594.025 kb on + strand at 594.025 kb on + strand at 594.065 kb on - strand at 594.074 kb on + strand at 594.074 kb on + strand at 594.075 kb on - strand at 594.085 kb on + strand at 594.085 kb on + strand at 594.085 kb on + strand at 594.086 kb on - strand at 594.140 kb on - strand at 594.140 kb on - strand at 594.169 kb on + strand at 594.169 kb on + strand at 594.170 kb on - strand at 594.215 kb on + strand, within GFF1944 at 594.418 kb on + strand, within GFF1944 at 594.436 kb on + strand, within GFF1944 at 594.436 kb on + strand, within GFF1944 at 594.437 kb on - strand, within GFF1944 at 594.496 kb on - strand, within GFF1944 at 594.496 kb on - strand, within GFF1944 at 594.575 kb on - strand, within GFF1944 at 594.628 kb on + strand at 594.675 kb on + strand at 594.675 kb on + strand at 594.676 kb on - strand at 594.682 kb on + strand at 594.682 kb on + strand at 594.682 kb on + strand at 594.682 kb on + strand at 594.682 kb on + strand at 594.703 kb on + strand at 594.703 kb on + strand at 594.703 kb on + strand at 594.703 kb on + strand at 594.703 kb on + strand at 594.703 kb on + strand at 594.703 kb on + strand at 594.703 kb on + strand at 594.703 kb on + strand at 594.703 kb on + strand at 594.703 kb on + strand at 594.704 kb on - strand at 594.704 kb on - strand at 594.704 kb on - strand at 594.704 kb on - strand at 594.704 kb on - strand at 594.704 kb on - strand at 594.704 kb on - strand at 594.705 kb on + strand at 594.705 kb on + strand at 594.705 kb on + strand at 594.706 kb on - strand at 594.706 kb on - strand at 594.706 kb on - strand at 594.738 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.774 kb on + strand at 594.774 kb on + strand at 594.774 kb on + strand at 594.774 kb on + strand at 594.775 kb on - strand at 594.775 kb on - strand at 594.775 kb on - strand at 594.775 kb on - strand at 594.775 kb on - strand at 594.775 kb on - strand at 594.775 kb on - strand at 594.775 kb on - strand at 594.775 kb on - strand at 594.775 kb on - strand at 594.811 kb on + strand at 594.812 kb on - strand at 594.812 kb on - strand at 594.853 kb on + strand, within GFF1945 at 594.893 kb on - strand, within GFF1945 at 594.893 kb on - strand, within GFF1945 at 594.893 kb on - strand, within GFF1945 at 594.915 kb on + strand, within GFF1945 at 594.915 kb on + strand, within GFF1945 at 594.916 kb on - strand, within GFF1945 at 594.916 kb on - strand, within GFF1945 at 594.927 kb on + strand, within GFF1945 at 594.927 kb on + strand, within GFF1945 at 594.928 kb on - strand, within GFF1945 at 594.928 kb on - strand, within GFF1945 at 594.951 kb on - strand, within GFF1945 at 594.951 kb on - strand, within GFF1945 at 594.980 kb on + strand, within GFF1945 at 594.981 kb on - strand, within GFF1945 at 594.993 kb on + strand, within GFF1945 at 594.994 kb on - strand, within GFF1945 at 595.045 kb on - strand, within GFF1945 at 595.060 kb on + strand, within GFF1945 at 595.060 kb on + strand, within GFF1945 at 595.060 kb on + strand, within GFF1945 at 595.064 kb on - strand, within GFF1945 at 595.064 kb on - strand, within GFF1945 at 595.064 kb on - strand, within GFF1945 at 595.073 kb on + strand, within GFF1945 at 595.073 kb on + strand, within GFF1945 at 595.074 kb on - strand, within GFF1945 at 595.089 kb on + strand, within GFF1945 at 595.089 kb on + strand, within GFF1945 at 595.090 kb on - strand, within GFF1945 at 595.090 kb on - strand, within GFF1945 at 595.099 kb on - strand, within GFF1945 at 595.099 kb on - strand, within GFF1945 at 595.112 kb on - strand, within GFF1945 at 595.112 kb on - strand, within GFF1945 at 595.112 kb on - strand, within GFF1945 at 595.160 kb on + strand at 595.161 kb on - strand at 595.183 kb on + strand at 595.183 kb on + strand at 595.183 kb on + strand at 595.184 kb on - strand at 595.184 kb on - strand at 595.184 kb on - strand at 595.184 kb on - strand at 595.184 kb on - strand at 595.184 kb on - strand at 595.185 kb on + strand at 595.185 kb on + strand at 595.185 kb on + strand at 595.185 kb on + strand at 595.185 kb on + strand at 595.185 kb on + strand at 595.185 kb on + strand at 595.185 kb on + strand at 595.185 kb on + strand at 595.186 kb on - strand at 595.186 kb on - strand at 595.186 kb on - strand at 595.186 kb on - strand at 595.186 kb on - strand at 595.186 kb on - strand at 595.186 kb on - strand at 595.186 kb on - strand at 595.186 kb on - strand at 595.186 kb on - strand at 595.186 kb on - strand at 595.186 kb on - strand at 595.187 kb on + strand at 595.187 kb on + strand at 595.187 kb on + strand at 595.187 kb on + strand at 595.187 kb on + strand at 595.187 kb on + strand at 595.187 kb on + strand at 595.187 kb on + strand at 595.188 kb on - strand at 595.188 kb on - strand at 595.188 kb on - strand at 595.188 kb on - strand at 595.188 kb on - strand at 595.195 kb on - strand at 595.205 kb on + strand at 595.205 kb on + strand at 595.206 kb on - strand at 595.206 kb on - strand at 595.206 kb on - strand at 595.227 kb on + strand, within GFF1946 at 595.228 kb on - strand, within GFF1946 at 595.292 kb on + strand, within GFF1946 at 595.524 kb on + strand at 595.525 kb on - strand at 595.525 kb on - strand at 595.608 kb on + strand at 595.613 kb on + strand at 595.613 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 593,167 + -0.8 593,203 - +0.7 593,203 - -0.8 593,262 + -1.8 593,262 + -0.5 593,262 + +0.2 593,263 - -2.1 593,263 - +0.8 593,263 - -0.8 593,263 - -0.8 593,263 - +0.4 593,394 + GFF1943 0.22 +0.8 593,394 + GFF1943 0.22 -0.5 593,394 + GFF1943 0.22 -0.6 593,394 + GFF1943 0.22 -0.1 593,394 + GFF1943 0.22 +0.9 593,394 + GFF1943 0.22 -0.6 593,394 + GFF1943 0.22 -0.2 593,394 + GFF1943 0.22 -0.2 593,395 - GFF1943 0.22 -0.8 593,395 - GFF1943 0.22 -1.2 593,395 - GFF1943 0.22 -0.9 593,395 - GFF1943 0.22 +0.2 593,395 - GFF1943 0.22 +0.2 593,396 + GFF1943 0.22 -0.3 593,396 + GFF1943 0.22 +0.2 593,396 + GFF1943 0.22 -2.3 593,396 + GFF1943 0.22 -1.6 593,396 + GFF1943 0.22 -1.3 593,396 + GFF1943 0.22 +0.4 593,396 + GFF1943 0.22 -0.7 593,396 + GFF1943 0.22 -1.1 593,396 + GFF1943 0.22 +0.9 593,396 + GFF1943 0.22 -2.4 593,397 - GFF1943 0.22 -1.1 593,397 - GFF1943 0.22 -1.5 593,397 - GFF1943 0.22 -0.1 593,397 - GFF1943 0.22 +0.2 593,397 - GFF1943 0.22 -1.1 593,397 - GFF1943 0.22 -0.5 593,398 + GFF1943 0.22 -0.2 593,398 + GFF1943 0.22 +0.5 593,398 + GFF1943 0.22 -0.8 593,398 + GFF1943 0.22 -1.1 593,398 + GFF1943 0.22 -0.3 593,398 + GFF1943 0.22 -0.2 593,398 + GFF1943 0.22 -0.2 593,398 + GFF1943 0.22 +1.2 593,399 - GFF1943 0.22 -0.9 593,399 - GFF1943 0.22 -1.3 593,399 - GFF1943 0.22 -1.0 593,399 - GFF1943 0.22 -1.6 593,399 - GFF1943 0.22 -0.6 593,399 - GFF1943 0.22 +0.2 593,399 - GFF1943 0.22 -0.8 593,422 + GFF1943 0.26 -1.1 593,422 + GFF1943 0.26 -0.3 593,422 + GFF1943 0.26 -1.7 593,423 - GFF1943 0.26 -1.1 593,423 - GFF1943 0.26 -0.8 593,423 - GFF1943 0.26 -1.1 593,423 - GFF1943 0.26 -1.1 593,426 + GFF1943 0.26 +0.2 593,427 - GFF1943 0.27 -0.3 593,427 - GFF1943 0.27 -0.5 593,427 - GFF1943 0.27 +0.0 593,427 - GFF1943 0.27 +0.6 593,515 + GFF1943 0.40 -1.1 593,515 + GFF1943 0.40 -0.8 593,515 + GFF1943 0.40 -0.8 593,515 + GFF1943 0.40 +0.9 593,516 - GFF1943 0.40 +0.0 593,516 - GFF1943 0.40 +1.0 593,516 - GFF1943 0.40 +0.2 593,516 - GFF1943 0.40 -1.6 593,663 + GFF1943 0.63 -2.1 593,663 + GFF1943 0.63 -1.1 593,663 + GFF1943 0.63 -0.6 593,664 - GFF1943 0.63 +0.2 593,664 - GFF1943 0.63 -0.7 593,740 - GFF1943 0.74 -0.6 593,751 + GFF1943 0.76 -1.1 593,752 - GFF1943 0.76 -0.8 593,840 - GFF1943 0.89 -0.1 593,906 + +0.4 593,906 + -0.7 593,906 + -0.8 593,906 + +0.2 593,921 + -1.5 593,921 + -0.1 593,921 + -2.1 593,958 + -0.9 593,958 + +0.2 593,958 + -0.8 593,958 + -0.2 593,959 - -2.2 593,965 + -1.1 593,966 - +0.2 594,001 - -1.1 594,025 + -0.0 594,025 + -2.0 594,025 + -1.5 594,065 - -1.2 594,074 + +0.4 594,074 + -0.8 594,075 - -0.8 594,085 + -1.2 594,085 + +0.2 594,085 + +0.1 594,086 - -0.2 594,140 - +0.2 594,140 - -1.3 594,169 + -0.4 594,169 + +0.8 594,170 - -1.8 594,215 + GFF1944 0.18 -0.1 594,418 + GFF1944 0.54 -0.3 594,436 + GFF1944 0.57 -0.5 594,436 + GFF1944 0.57 -1.7 594,437 - GFF1944 0.57 +0.8 594,496 - GFF1944 0.68 -0.1 594,496 - GFF1944 0.68 -1.3 594,575 - GFF1944 0.82 -2.5 594,628 + -0.3 594,675 + -1.1 594,675 + -0.3 594,676 - -0.8 594,682 + -1.6 594,682 + -1.4 594,682 + -1.1 594,682 + +0.0 594,682 + -0.3 594,703 + -0.8 594,703 + -1.3 594,703 + -0.8 594,703 + -0.1 594,703 + +0.1 594,703 + -0.3 594,703 + +1.2 594,703 + -0.4 594,703 + -1.2 594,703 + -0.9 594,703 + -0.7 594,704 - -1.1 594,704 - -1.2 594,704 - -1.8 594,704 - -1.1 594,704 - -1.1 594,704 - -0.3 594,704 - -1.8 594,705 + -0.3 594,705 + -2.1 594,705 + +1.2 594,706 - -0.3 594,706 - -1.3 594,706 - -0.3 594,738 + -0.8 594,770 + -0.8 594,770 + -0.9 594,770 + +0.9 594,770 + -1.3 594,770 + +0.1 594,770 + -1.1 594,770 + -0.6 594,770 + -0.2 594,770 + -0.8 594,770 + -1.3 594,770 + +0.2 594,770 + -0.5 594,770 + -0.9 594,770 + -1.0 594,770 + -0.6 594,770 + -0.5 594,770 + +0.8 594,770 + -1.1 594,770 + -0.5 594,771 - -0.8 594,771 - -1.1 594,771 - -0.6 594,771 - -1.3 594,771 - -0.2 594,771 - -0.3 594,771 - +0.2 594,771 - +0.8 594,771 - -0.2 594,771 - -0.6 594,771 - -1.5 594,771 - -0.1 594,771 - +0.0 594,771 - +0.0 594,774 + -0.8 594,774 + +0.2 594,774 + +0.4 594,774 + -0.7 594,775 - -1.6 594,775 - -1.0 594,775 - -1.5 594,775 - -0.8 594,775 - -0.3 594,775 - -1.3 594,775 - -1.1 594,775 - -0.8 594,775 - -0.9 594,775 - +0.8 594,811 + -1.2 594,812 - -1.3 594,812 - -0.8 594,853 + GFF1945 0.16 -1.5 594,893 - GFF1945 0.26 -1.9 594,893 - GFF1945 0.26 -0.3 594,893 - GFF1945 0.26 -0.8 594,915 + GFF1945 0.31 +0.9 594,915 + GFF1945 0.31 -1.1 594,916 - GFF1945 0.32 -0.1 594,916 - GFF1945 0.32 -1.1 594,927 + GFF1945 0.34 -1.6 594,927 + GFF1945 0.34 -0.3 594,928 - GFF1945 0.35 -0.3 594,928 - GFF1945 0.35 +0.1 594,951 - GFF1945 0.40 -1.0 594,951 - GFF1945 0.40 -0.0 594,980 + GFF1945 0.47 -0.8 594,981 - GFF1945 0.48 +0.2 594,993 + GFF1945 0.50 -0.3 594,994 - GFF1945 0.51 +0.7 595,045 - GFF1945 0.63 -1.1 595,060 + GFF1945 0.67 -1.3 595,060 + GFF1945 0.67 +0.4 595,060 + GFF1945 0.67 -0.1 595,064 - GFF1945 0.68 +0.9 595,064 - GFF1945 0.68 -1.1 595,064 - GFF1945 0.68 +0.6 595,073 + GFF1945 0.70 +0.2 595,073 + GFF1945 0.70 -0.1 595,074 - GFF1945 0.70 -0.3 595,089 + GFF1945 0.74 -0.2 595,089 + GFF1945 0.74 -0.8 595,090 - GFF1945 0.74 -1.3 595,090 - GFF1945 0.74 -0.1 595,099 - GFF1945 0.76 +0.9 595,099 - GFF1945 0.76 -0.3 595,112 - GFF1945 0.80 -1.0 595,112 - GFF1945 0.80 -0.9 595,112 - GFF1945 0.80 -0.1 595,160 + -0.7 595,161 - +0.2 595,183 + +0.5 595,183 + -1.1 595,183 + -0.8 595,184 - -0.8 595,184 - -0.8 595,184 - -0.6 595,184 - +0.3 595,184 - -1.1 595,184 - +0.5 595,185 + -0.9 595,185 + -0.3 595,185 + -1.6 595,185 + +0.2 595,185 + -1.1 595,185 + +0.8 595,185 + -0.1 595,185 + -0.8 595,185 + -1.1 595,186 - -0.9 595,186 - -1.3 595,186 - +0.2 595,186 - +0.1 595,186 - -0.8 595,186 - -0.4 595,186 - +0.2 595,186 - -0.9 595,186 - -1.9 595,186 - +0.2 595,186 - +0.7 595,186 - -0.7 595,187 + -0.7 595,187 + -1.9 595,187 + -0.3 595,187 + +0.8 595,187 + +0.5 595,187 + -1.3 595,187 + -0.5 595,187 + -0.2 595,188 - -0.8 595,188 - -1.6 595,188 - -0.7 595,188 - -0.8 595,188 - -0.6 595,195 - -0.5 595,205 + -1.6 595,205 + -0.6 595,206 - +0.0 595,206 - +0.1 595,206 - -1.0 595,227 + GFF1946 0.14 -2.8 595,228 - GFF1946 0.15 -1.9 595,292 + GFF1946 0.40 -0.3 595,524 + -0.2 595,525 - -1.6 595,525 - -0.1 595,608 + -0.6 595,613 + -0.4 595,613 + -0.8
Or see this region's nucleotide sequence