Strain Fitness in Methylophilus sp. DMC18 around GFF1349

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1347 and GFF1348 are separated by 96 nucleotidesGFF1348 and GFF1349 are separated by 44 nucleotidesGFF1349 and GFF1350 are separated by 30 nucleotides GFF1347 - Motility protein B, at 612,397 to 613,341 GFF1347 GFF1348 - hypothetical protein, at 613,438 to 613,980 GFF1348 GFF1349 - Phosphate regulon transcriptional regulatory protein PhoB, at 614,025 to 614,393 GFF1349 GFF1350 - hypothetical protein, at 614,424 to 616,838 GFF1350 Position (kb) 614 615Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 613.033 kb on + strand, within GFF1347at 613.034 kb on - strand, within GFF1347at 613.054 kb on + strand, within GFF1347at 613.060 kb on - strand, within GFF1347at 613.136 kb on + strand, within GFF1347at 613.136 kb on + strand, within GFF1347at 613.250 kb on + strandat 613.250 kb on + strandat 613.251 kb on - strandat 613.251 kb on - strandat 613.357 kb on + strandat 613.384 kb on - strandat 613.392 kb on + strandat 613.393 kb on - strandat 613.393 kb on - strandat 613.428 kb on + strandat 613.428 kb on + strandat 613.428 kb on + strandat 613.428 kb on + strandat 613.428 kb on + strandat 613.428 kb on + strandat 613.429 kb on - strandat 613.429 kb on - strandat 613.429 kb on - strandat 613.437 kb on + strandat 613.437 kb on + strandat 613.455 kb on - strandat 613.463 kb on + strandat 613.463 kb on + strandat 613.463 kb on + strandat 613.464 kb on - strandat 613.464 kb on - strandat 613.464 kb on - strandat 613.472 kb on + strandat 613.472 kb on + strandat 613.594 kb on + strand, within GFF1348at 613.594 kb on + strand, within GFF1348at 613.594 kb on + strand, within GFF1348at 613.594 kb on + strand, within GFF1348at 613.595 kb on - strand, within GFF1348at 613.595 kb on - strand, within GFF1348at 613.595 kb on - strand, within GFF1348at 613.595 kb on - strand, within GFF1348at 613.595 kb on - strand, within GFF1348at 613.604 kb on + strand, within GFF1348at 613.631 kb on + strand, within GFF1348at 613.696 kb on - strand, within GFF1348at 613.790 kb on + strand, within GFF1348at 613.802 kb on + strand, within GFF1348at 613.802 kb on + strand, within GFF1348at 613.802 kb on + strand, within GFF1348at 613.802 kb on + strand, within GFF1348at 613.803 kb on - strand, within GFF1348at 613.803 kb on - strand, within GFF1348at 613.812 kb on - strand, within GFF1348at 613.974 kb on - strandat 613.978 kb on + strandat 614.041 kb on + strandat 614.041 kb on + strandat 614.048 kb on - strandat 614.103 kb on + strand, within GFF1349at 614.104 kb on - strand, within GFF1349at 614.113 kb on + strand, within GFF1349at 614.114 kb on - strand, within GFF1349at 614.231 kb on + strand, within GFF1349at 614.231 kb on + strand, within GFF1349at 614.232 kb on - strand, within GFF1349at 614.245 kb on - strand, within GFF1349at 614.258 kb on + strand, within GFF1349at 614.371 kb on + strandat 614.371 kb on + strandat 614.380 kb on + strandat 614.391 kb on + strandat 614.436 kb on - strandat 614.448 kb on + strandat 614.479 kb on + strandat 614.479 kb on + strandat 614.479 kb on + strandat 614.479 kb on + strandat 614.518 kb on + strandat 614.519 kb on - strandat 614.519 kb on - strandat 614.738 kb on + strand, within GFF1350at 614.738 kb on + strand, within GFF1350at 614.738 kb on + strand, within GFF1350at 614.738 kb on + strand, within GFF1350at 614.738 kb on + strand, within GFF1350at 614.739 kb on - strand, within GFF1350at 614.739 kb on - strand, within GFF1350at 614.739 kb on - strand, within GFF1350at 614.755 kb on + strand, within GFF1350at 614.755 kb on + strand, within GFF1350at 614.756 kb on - strand, within GFF1350at 614.756 kb on - strand, within GFF1350at 614.935 kb on + strand, within GFF1350at 614.935 kb on + strand, within GFF1350at 614.935 kb on + strand, within GFF1350at 614.935 kb on + strand, within GFF1350at 614.935 kb on + strand, within GFF1350at 614.935 kb on + strand, within GFF1350at 614.935 kb on + strand, within GFF1350at 614.935 kb on + strand, within GFF1350at 614.935 kb on + strand, within GFF1350at 614.935 kb on + strand, within GFF1350at 614.936 kb on - strand, within GFF1350at 614.936 kb on - strand, within GFF1350at 614.936 kb on - strand, within GFF1350at 614.936 kb on - strand, within GFF1350at 614.937 kb on + strand, within GFF1350at 614.937 kb on + strand, within GFF1350at 614.937 kb on + strand, within GFF1350at 614.937 kb on + strand, within GFF1350at 614.937 kb on + strand, within GFF1350at 614.937 kb on + strand, within GFF1350at 614.938 kb on - strand, within GFF1350at 614.938 kb on - strand, within GFF1350at 614.938 kb on - strand, within GFF1350at 614.938 kb on - strand, within GFF1350at 614.995 kb on + strand, within GFF1350at 614.996 kb on - strand, within GFF1350at 614.996 kb on - strand, within GFF1350at 615.004 kb on + strand, within GFF1350at 615.004 kb on + strand, within GFF1350at 615.005 kb on - strand, within GFF1350at 615.106 kb on + strand, within GFF1350at 615.106 kb on + strand, within GFF1350at 615.107 kb on - strand, within GFF1350at 615.357 kb on + strand, within GFF1350at 615.377 kb on + strand, within GFF1350at 615.378 kb on - strand, within GFF1350at 615.378 kb on - strand, within GFF1350

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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613,033 + GFF1347 0.67 -0.9
613,034 - GFF1347 0.67 -0.6
613,054 + GFF1347 0.70 +0.0
613,060 - GFF1347 0.70 -1.1
613,136 + GFF1347 0.78 -0.5
613,136 + GFF1347 0.78 +0.2
613,250 + -0.7
613,250 + -0.4
613,251 - +0.4
613,251 - +0.8
613,357 + -1.1
613,384 - -1.8
613,392 + +0.6
613,393 - -1.4
613,393 - -1.6
613,428 + -2.0
613,428 + -0.6
613,428 + -2.4
613,428 + -0.0
613,428 + -2.1
613,428 + -2.3
613,429 - -1.5
613,429 - -0.4
613,429 - -0.6
613,437 + -0.8
613,437 + -0.8
613,455 - -1.5
613,463 + -0.5
613,463 + -1.6
613,463 + -1.6
613,464 - -2.5
613,464 - -1.4
613,464 - -1.6
613,472 + -1.4
613,472 + -0.2
613,594 + GFF1348 0.29 -1.6
613,594 + GFF1348 0.29 +1.0
613,594 + GFF1348 0.29 -0.9
613,594 + GFF1348 0.29 -1.3
613,595 - GFF1348 0.29 -1.4
613,595 - GFF1348 0.29 -1.6
613,595 - GFF1348 0.29 -0.8
613,595 - GFF1348 0.29 -1.6
613,595 - GFF1348 0.29 -0.8
613,604 + GFF1348 0.31 -0.9
613,631 + GFF1348 0.36 -0.4
613,696 - GFF1348 0.48 -1.4
613,790 + GFF1348 0.65 -0.6
613,802 + GFF1348 0.67 -0.0
613,802 + GFF1348 0.67 +0.2
613,802 + GFF1348 0.67 -0.6
613,802 + GFF1348 0.67 -0.8
613,803 - GFF1348 0.67 -0.4
613,803 - GFF1348 0.67 -1.1
613,812 - GFF1348 0.69 -1.4
613,974 - -1.3
613,978 + +0.2
614,041 + +0.3
614,041 + +1.2
614,048 - -0.1
614,103 + GFF1349 0.21 -0.3
614,104 - GFF1349 0.21 -0.8
614,113 + GFF1349 0.24 +1.2
614,114 - GFF1349 0.24 -1.1
614,231 + GFF1349 0.56 -1.1
614,231 + GFF1349 0.56 +0.8
614,232 - GFF1349 0.56 -0.8
614,245 - GFF1349 0.60 -0.9
614,258 + GFF1349 0.63 -0.2
614,371 + -0.2
614,371 + +1.8
614,380 + -2.4
614,391 + -1.1
614,436 - -2.4
614,448 + +0.2
614,479 + -2.1
614,479 + -0.6
614,479 + -0.4
614,479 + -1.1
614,518 + -1.1
614,519 - -1.4
614,519 - -0.8
614,738 + GFF1350 0.13 -1.3
614,738 + GFF1350 0.13 -1.1
614,738 + GFF1350 0.13 -3.6
614,738 + GFF1350 0.13 -1.1
614,738 + GFF1350 0.13 -0.9
614,739 - GFF1350 0.13 -0.8
614,739 - GFF1350 0.13 -1.9
614,739 - GFF1350 0.13 -0.1
614,755 + GFF1350 0.14 -1.0
614,755 + GFF1350 0.14 -1.9
614,756 - GFF1350 0.14 -0.1
614,756 - GFF1350 0.14 -1.4
614,935 + GFF1350 0.21 -1.7
614,935 + GFF1350 0.21 -1.1
614,935 + GFF1350 0.21 -1.5
614,935 + GFF1350 0.21 +0.2
614,935 + GFF1350 0.21 -0.8
614,935 + GFF1350 0.21 -1.1
614,935 + GFF1350 0.21 -1.4
614,935 + GFF1350 0.21 -0.8
614,935 + GFF1350 0.21 -0.4
614,935 + GFF1350 0.21 +0.0
614,936 - GFF1350 0.21 -0.8
614,936 - GFF1350 0.21 -0.8
614,936 - GFF1350 0.21 -1.1
614,936 - GFF1350 0.21 +0.0
614,937 + GFF1350 0.21 -0.2
614,937 + GFF1350 0.21 -0.6
614,937 + GFF1350 0.21 -0.8
614,937 + GFF1350 0.21 -1.9
614,937 + GFF1350 0.21 -0.8
614,937 + GFF1350 0.21 -1.6
614,938 - GFF1350 0.21 -0.4
614,938 - GFF1350 0.21 -1.0
614,938 - GFF1350 0.21 -0.8
614,938 - GFF1350 0.21 -0.8
614,995 + GFF1350 0.24 -0.6
614,996 - GFF1350 0.24 -0.8
614,996 - GFF1350 0.24 -1.0
615,004 + GFF1350 0.24 -1.6
615,004 + GFF1350 0.24 -0.6
615,005 - GFF1350 0.24 -1.0
615,106 + GFF1350 0.28 +0.4
615,106 + GFF1350 0.28 -1.3
615,107 - GFF1350 0.28 +0.6
615,357 + GFF1350 0.39 -1.5
615,377 + GFF1350 0.39 -1.0
615,378 - GFF1350 0.40 -2.0
615,378 - GFF1350 0.40 +0.2

Or see this region's nucleotide sequence