Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06357

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06356 and MPMX19_06357 overlap by 4 nucleotidesMPMX19_06357 and MPMX19_06358 are separated by 348 nucleotides MPMX19_06356: MPMX19_06356 - hypothetical protein, at 122,608 to 123,846 _06356 MPMX19_06357: MPMX19_06357 - hypothetical protein, at 123,843 to 125,282 _06357 MPMX19_06358: MPMX19_06358 - IS1380 family transposase ISAzs25, at 125,631 to 126,971 _06358 Position (kb) 123 124 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 122.879 kb on + strand, within MPMX19_06356at 122.879 kb on + strand, within MPMX19_06356at 122.879 kb on + strand, within MPMX19_06356at 122.880 kb on - strand, within MPMX19_06356at 122.880 kb on - strand, within MPMX19_06356at 122.880 kb on - strand, within MPMX19_06356at 122.880 kb on - strand, within MPMX19_06356at 123.104 kb on + strand, within MPMX19_06356at 123.104 kb on + strand, within MPMX19_06356at 123.104 kb on + strand, within MPMX19_06356at 123.105 kb on - strand, within MPMX19_06356at 123.105 kb on - strand, within MPMX19_06356at 123.137 kb on + strand, within MPMX19_06356at 123.137 kb on + strand, within MPMX19_06356at 123.137 kb on + strand, within MPMX19_06356at 123.137 kb on + strand, within MPMX19_06356at 123.137 kb on + strand, within MPMX19_06356at 123.138 kb on - strand, within MPMX19_06356at 123.138 kb on - strand, within MPMX19_06356at 123.138 kb on - strand, within MPMX19_06356at 123.138 kb on - strand, within MPMX19_06356at 123.138 kb on - strand, within MPMX19_06356at 123.140 kb on + strand, within MPMX19_06356at 123.140 kb on + strand, within MPMX19_06356at 123.140 kb on + strand, within MPMX19_06356at 123.141 kb on - strand, within MPMX19_06356at 123.141 kb on - strand, within MPMX19_06356at 123.318 kb on + strand, within MPMX19_06356at 123.431 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.465 kb on - strand, within MPMX19_06356at 123.465 kb on - strand, within MPMX19_06356at 123.465 kb on - strand, within MPMX19_06356at 123.465 kb on - strand, within MPMX19_06356at 123.465 kb on - strand, within MPMX19_06356at 123.465 kb on - strand, within MPMX19_06356at 123.465 kb on - strand, within MPMX19_06356at 123.465 kb on - strand, within MPMX19_06356at 123.671 kb on + strand, within MPMX19_06356at 123.671 kb on + strand, within MPMX19_06356at 123.671 kb on + strand, within MPMX19_06356at 123.671 kb on + strand, within MPMX19_06356at 123.671 kb on + strand, within MPMX19_06356at 123.672 kb on - strand, within MPMX19_06356at 123.672 kb on - strand, within MPMX19_06356at 123.672 kb on - strand, within MPMX19_06356at 123.672 kb on - strand, within MPMX19_06356at 123.672 kb on - strand, within MPMX19_06356at 123.672 kb on - strand, within MPMX19_06356at 123.672 kb on - strand, within MPMX19_06356at 123.734 kb on + strandat 123.734 kb on + strandat 123.735 kb on - strandat 123.735 kb on - strandat 123.735 kb on - strandat 123.735 kb on - strandat 123.735 kb on - strandat 123.735 kb on - strandat 123.735 kb on - strandat 123.735 kb on - strandat 123.735 kb on - strandat 124.131 kb on - strand, within MPMX19_06357at 124.183 kb on + strand, within MPMX19_06357at 124.183 kb on + strand, within MPMX19_06357at 124.183 kb on + strand, within MPMX19_06357at 124.183 kb on + strand, within MPMX19_06357at 124.183 kb on + strand, within MPMX19_06357at 124.183 kb on + strand, within MPMX19_06357at 124.183 kb on + strand, within MPMX19_06357at 124.183 kb on + strand, within MPMX19_06357at 124.183 kb on + strand, within MPMX19_06357at 124.184 kb on - strand, within MPMX19_06357at 124.184 kb on - strand, within MPMX19_06357at 124.184 kb on - strand, within MPMX19_06357at 124.184 kb on - strand, within MPMX19_06357at 124.184 kb on - strand, within MPMX19_06357at 124.184 kb on - strand, within MPMX19_06357at 124.184 kb on - strand, within MPMX19_06357at 124.184 kb on - strand, within MPMX19_06357at 124.184 kb on - strand, within MPMX19_06357at 124.184 kb on - strand, within MPMX19_06357at 124.184 kb on - strand, within MPMX19_06357at 124.487 kb on + strand, within MPMX19_06357at 124.488 kb on - strand, within MPMX19_06357at 124.488 kb on - strand, within MPMX19_06357at 124.520 kb on + strand, within MPMX19_06357at 124.705 kb on + strand, within MPMX19_06357at 124.705 kb on + strand, within MPMX19_06357at 124.705 kb on + strand, within MPMX19_06357at 124.706 kb on - strand, within MPMX19_06357at 124.706 kb on - strand, within MPMX19_06357at 124.706 kb on - strand, within MPMX19_06357at 125.017 kb on + strand, within MPMX19_06357at 125.018 kb on - strand, within MPMX19_06357at 125.018 kb on - strand, within MPMX19_06357at 125.018 kb on - strand, within MPMX19_06357at 125.116 kb on + strand, within MPMX19_06357at 125.116 kb on + strand, within MPMX19_06357at 125.116 kb on + strand, within MPMX19_06357at 125.116 kb on + strand, within MPMX19_06357at 125.116 kb on + strand, within MPMX19_06357at 125.117 kb on - strand, within MPMX19_06357at 125.117 kb on - strand, within MPMX19_06357at 125.117 kb on - strand, within MPMX19_06357at 125.117 kb on - strand, within MPMX19_06357at 125.117 kb on - strand, within MPMX19_06357at 125.160 kb on - strandat 125.235 kb on + strandat 125.534 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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122,879 + MPMX19_06356 0.22 +0.6
122,879 + MPMX19_06356 0.22 -0.7
122,879 + MPMX19_06356 0.22 +0.8
122,880 - MPMX19_06356 0.22 -2.0
122,880 - MPMX19_06356 0.22 -1.1
122,880 - MPMX19_06356 0.22 +0.9
122,880 - MPMX19_06356 0.22 -0.7
123,104 + MPMX19_06356 0.40 +0.2
123,104 + MPMX19_06356 0.40 -0.2
123,104 + MPMX19_06356 0.40 -0.8
123,105 - MPMX19_06356 0.40 -0.7
123,105 - MPMX19_06356 0.40 -0.9
123,137 + MPMX19_06356 0.43 +1.1
123,137 + MPMX19_06356 0.43 +0.9
123,137 + MPMX19_06356 0.43 -1.0
123,137 + MPMX19_06356 0.43 +0.2
123,137 + MPMX19_06356 0.43 -0.7
123,138 - MPMX19_06356 0.43 -0.8
123,138 - MPMX19_06356 0.43 -0.9
123,138 - MPMX19_06356 0.43 -0.2
123,138 - MPMX19_06356 0.43 +0.2
123,138 - MPMX19_06356 0.43 -1.4
123,140 + MPMX19_06356 0.43 +1.2
123,140 + MPMX19_06356 0.43 -0.6
123,140 + MPMX19_06356 0.43 -0.4
123,141 - MPMX19_06356 0.43 -0.9
123,141 - MPMX19_06356 0.43 +1.2
123,318 + MPMX19_06356 0.57 -0.2
123,431 + MPMX19_06356 0.66 -0.4
123,464 + MPMX19_06356 0.69 +1.4
123,464 + MPMX19_06356 0.69 -0.2
123,464 + MPMX19_06356 0.69 +0.4
123,464 + MPMX19_06356 0.69 -0.6
123,464 + MPMX19_06356 0.69 -1.7
123,464 + MPMX19_06356 0.69 -0.7
123,464 + MPMX19_06356 0.69 -0.7
123,464 + MPMX19_06356 0.69 +0.2
123,464 + MPMX19_06356 0.69 +0.4
123,464 + MPMX19_06356 0.69 +0.2
123,464 + MPMX19_06356 0.69 -0.8
123,464 + MPMX19_06356 0.69 -0.4
123,464 + MPMX19_06356 0.69 +0.2
123,465 - MPMX19_06356 0.69 -0.1
123,465 - MPMX19_06356 0.69 -0.4
123,465 - MPMX19_06356 0.69 -1.2
123,465 - MPMX19_06356 0.69 -0.4
123,465 - MPMX19_06356 0.69 -1.0
123,465 - MPMX19_06356 0.69 +0.3
123,465 - MPMX19_06356 0.69 -1.2
123,465 - MPMX19_06356 0.69 +0.4
123,671 + MPMX19_06356 0.86 -1.5
123,671 + MPMX19_06356 0.86 -0.6
123,671 + MPMX19_06356 0.86 -1.3
123,671 + MPMX19_06356 0.86 -0.4
123,671 + MPMX19_06356 0.86 -0.1
123,672 - MPMX19_06356 0.86 -0.4
123,672 - MPMX19_06356 0.86 -0.6
123,672 - MPMX19_06356 0.86 -0.8
123,672 - MPMX19_06356 0.86 -0.7
123,672 - MPMX19_06356 0.86 -0.0
123,672 - MPMX19_06356 0.86 -1.5
123,672 - MPMX19_06356 0.86 -1.9
123,734 + -0.2
123,734 + -0.5
123,735 - +0.4
123,735 - -0.9
123,735 - -1.4
123,735 - -0.1
123,735 - +0.3
123,735 - +0.8
123,735 - -1.1
123,735 - -0.7
123,735 - +0.1
124,131 - MPMX19_06357 0.20 -1.8
124,183 + MPMX19_06357 0.24 -3.4
124,183 + MPMX19_06357 0.24 +0.6
124,183 + MPMX19_06357 0.24 +0.4
124,183 + MPMX19_06357 0.24 -0.1
124,183 + MPMX19_06357 0.24 +0.2
124,183 + MPMX19_06357 0.24 -0.3
124,183 + MPMX19_06357 0.24 -0.4
124,183 + MPMX19_06357 0.24 -1.8
124,183 + MPMX19_06357 0.24 +0.2
124,184 - MPMX19_06357 0.24 -1.0
124,184 - MPMX19_06357 0.24 +0.4
124,184 - MPMX19_06357 0.24 -1.2
124,184 - MPMX19_06357 0.24 -0.3
124,184 - MPMX19_06357 0.24 -0.8
124,184 - MPMX19_06357 0.24 +1.4
124,184 - MPMX19_06357 0.24 +0.5
124,184 - MPMX19_06357 0.24 +0.6
124,184 - MPMX19_06357 0.24 -0.8
124,184 - MPMX19_06357 0.24 -0.5
124,184 - MPMX19_06357 0.24 -1.8
124,487 + MPMX19_06357 0.45 -1.4
124,488 - MPMX19_06357 0.45 -0.7
124,488 - MPMX19_06357 0.45 -2.3
124,520 + MPMX19_06357 0.47 -1.5
124,705 + MPMX19_06357 0.60 +0.2
124,705 + MPMX19_06357 0.60 -1.0
124,705 + MPMX19_06357 0.60 -1.4
124,706 - MPMX19_06357 0.60 +2.0
124,706 - MPMX19_06357 0.60 -0.4
124,706 - MPMX19_06357 0.60 -1.9
125,017 + MPMX19_06357 0.82 +0.3
125,018 - MPMX19_06357 0.82 -1.2
125,018 - MPMX19_06357 0.82 +0.6
125,018 - MPMX19_06357 0.82 -1.1
125,116 + MPMX19_06357 0.88 -0.5
125,116 + MPMX19_06357 0.88 +0.1
125,116 + MPMX19_06357 0.88 +0.5
125,116 + MPMX19_06357 0.88 -0.9
125,116 + MPMX19_06357 0.88 +0.6
125,117 - MPMX19_06357 0.88 -0.7
125,117 - MPMX19_06357 0.88 -0.1
125,117 - MPMX19_06357 0.88 -1.2
125,117 - MPMX19_06357 0.88 +0.1
125,117 - MPMX19_06357 0.88 +0.3
125,160 - -0.9
125,235 + +2.0
125,534 - -0.1

Or see this region's nucleotide sequence