Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06351 and MPMX19_06352 overlap by 4 nucleotides MPMX19_06352 and MPMX19_06353 are separated by 52 nucleotides MPMX19_06353 and MPMX19_06354 are separated by 744 nucleotides
MPMX19_06351: MPMX19_06351 - Arsenate reductase, at 117,453 to 117,887
_06351
MPMX19_06352: MPMX19_06352 - Arsenate reductase, at 117,884 to 118,402
_06352
MPMX19_06353: MPMX19_06353 - hypothetical protein, at 118,455 to 118,811
_06353
MPMX19_06354: MPMX19_06354 - Methyl-accepting chemotaxis protein, at 119,556 to 121,403
_06354
Position (kb)
118
119 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 117.787 kb on + strand, within MPMX19_06351 at 117.787 kb on + strand, within MPMX19_06351 at 117.787 kb on + strand, within MPMX19_06351 at 117.788 kb on - strand, within MPMX19_06351 at 117.788 kb on - strand, within MPMX19_06351 at 117.868 kb on + strand at 117.868 kb on + strand at 117.868 kb on + strand at 117.868 kb on + strand at 117.868 kb on + strand at 117.868 kb on + strand at 117.868 kb on + strand at 117.868 kb on + strand at 117.868 kb on + strand at 117.868 kb on + strand at 117.868 kb on + strand at 117.868 kb on + strand at 117.868 kb on + strand at 117.868 kb on + strand at 117.869 kb on - strand at 117.869 kb on - strand at 117.869 kb on - strand at 117.869 kb on - strand at 117.869 kb on - strand at 117.869 kb on - strand at 117.869 kb on - strand at 117.869 kb on - strand at 117.869 kb on - strand at 117.869 kb on - strand at 117.923 kb on - strand at 117.991 kb on + strand, within MPMX19_06352 at 118.386 kb on + strand at 118.387 kb on - strand at 118.387 kb on - strand at 118.387 kb on - strand at 118.387 kb on - strand at 118.387 kb on - strand at 118.387 kb on - strand at 118.582 kb on + strand, within MPMX19_06353 at 118.594 kb on + strand, within MPMX19_06353 at 118.595 kb on - strand, within MPMX19_06353 at 118.803 kb on - strand at 118.899 kb on + strand at 119.047 kb on + strand at 119.047 kb on + strand at 119.048 kb on - strand at 119.048 kb on - strand at 119.048 kb on - strand at 119.048 kb on - strand at 119.048 kb on - strand at 119.260 kb on - strand at 119.260 kb on - strand at 119.260 kb on - strand at 119.383 kb on + strand at 119.383 kb on + strand at 119.393 kb on + strand at 119.393 kb on + strand at 119.393 kb on + strand at 119.393 kb on + strand at 119.394 kb on - strand at 119.394 kb on - strand at 119.394 kb on - strand at 119.394 kb on - strand at 119.394 kb on - strand at 119.556 kb on - strand at 119.663 kb on - strand at 119.689 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 117,787 + MPMX19_06351 0.77 -1.1 117,787 + MPMX19_06351 0.77 +0.9 117,787 + MPMX19_06351 0.77 +0.5 117,788 - MPMX19_06351 0.77 +0.7 117,788 - MPMX19_06351 0.77 +1.3 117,868 + -1.3 117,868 + +1.1 117,868 + -0.9 117,868 + -0.4 117,868 + -0.8 117,868 + -0.5 117,868 + -0.7 117,868 + -0.1 117,868 + -0.5 117,868 + -0.4 117,868 + -0.2 117,868 + -0.2 117,868 + +0.5 117,868 + -2.1 117,869 - -0.9 117,869 - +1.6 117,869 - +0.0 117,869 - -0.1 117,869 - -1.1 117,869 - +0.1 117,869 - +0.6 117,869 - +0.1 117,869 - -1.3 117,869 - +0.2 117,923 - -0.7 117,991 + MPMX19_06352 0.21 -0.4 118,386 + +3.0 118,387 - -0.6 118,387 - +1.2 118,387 - -2.4 118,387 - -0.5 118,387 - +0.4 118,387 - +0.5 118,582 + MPMX19_06353 0.36 -2.6 118,594 + MPMX19_06353 0.39 -0.9 118,595 - MPMX19_06353 0.39 -0.0 118,803 - -0.7 118,899 + -0.2 119,047 + -0.1 119,047 + -0.3 119,048 - +0.1 119,048 - -1.5 119,048 - +0.4 119,048 - +0.1 119,048 - -2.6 119,260 - +0.3 119,260 - -0.1 119,260 - +0.6 119,383 + -0.2 119,383 + -0.8 119,393 + -1.8 119,393 + -0.2 119,393 + +0.1 119,393 + -1.5 119,394 - +0.3 119,394 - -0.9 119,394 - -0.4 119,394 - -0.1 119,394 - -0.2 119,556 - -0.6 119,663 - -0.5 119,689 + +1.1
Or see this region's nucleotide sequence