Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05974

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05973 and MPMX19_05974 are separated by 283 nucleotidesMPMX19_05974 and MPMX19_05975 are separated by 191 nucleotides MPMX19_05973: MPMX19_05973 - hypothetical protein, at 123,921 to 125,696 _05973 MPMX19_05974: MPMX19_05974 - Glycerol kinase, at 125,980 to 127,473 _05974 MPMX19_05975: MPMX19_05975 - 3-methylmercaptopropionyl-CoA ligase, at 127,665 to 129,290 _05975 Position (kb) 125 126 127 128Strain fitness (log2 ratio) -2 -1 0 1 2at 125.016 kb on + strand, within MPMX19_05973at 125.016 kb on + strand, within MPMX19_05973at 125.016 kb on + strand, within MPMX19_05973at 125.016 kb on + strand, within MPMX19_05973at 125.016 kb on + strand, within MPMX19_05973at 125.017 kb on - strand, within MPMX19_05973at 125.017 kb on - strand, within MPMX19_05973at 125.116 kb on - strand, within MPMX19_05973at 125.211 kb on + strand, within MPMX19_05973at 125.211 kb on + strand, within MPMX19_05973at 125.211 kb on + strand, within MPMX19_05973at 125.212 kb on - strand, within MPMX19_05973at 125.212 kb on - strand, within MPMX19_05973at 125.346 kb on + strand, within MPMX19_05973at 125.346 kb on + strand, within MPMX19_05973at 125.347 kb on - strand, within MPMX19_05973at 125.400 kb on + strand, within MPMX19_05973at 125.652 kb on + strandat 125.653 kb on - strandat 125.653 kb on - strandat 125.653 kb on - strandat 125.694 kb on + strandat 125.695 kb on - strandat 125.750 kb on + strandat 125.751 kb on - strandat 125.787 kb on + strandat 125.788 kb on - strandat 126.385 kb on + strand, within MPMX19_05974at 126.385 kb on + strand, within MPMX19_05974at 126.385 kb on + strand, within MPMX19_05974at 126.385 kb on + strand, within MPMX19_05974at 126.386 kb on - strand, within MPMX19_05974at 126.386 kb on - strand, within MPMX19_05974at 126.493 kb on + strand, within MPMX19_05974at 126.493 kb on + strand, within MPMX19_05974at 126.493 kb on + strand, within MPMX19_05974at 126.493 kb on + strand, within MPMX19_05974at 126.493 kb on + strand, within MPMX19_05974at 126.493 kb on + strand, within MPMX19_05974at 126.493 kb on + strand, within MPMX19_05974at 126.493 kb on + strand, within MPMX19_05974at 126.493 kb on + strand, within MPMX19_05974at 126.493 kb on + strand, within MPMX19_05974at 126.494 kb on - strand, within MPMX19_05974at 126.494 kb on - strand, within MPMX19_05974at 126.494 kb on - strand, within MPMX19_05974at 126.494 kb on - strand, within MPMX19_05974at 126.494 kb on - strand, within MPMX19_05974at 126.494 kb on - strand, within MPMX19_05974at 126.494 kb on - strand, within MPMX19_05974at 126.494 kb on - strand, within MPMX19_05974at 126.494 kb on - strand, within MPMX19_05974at 126.494 kb on - strand, within MPMX19_05974at 126.772 kb on + strand, within MPMX19_05974at 126.772 kb on + strand, within MPMX19_05974at 126.772 kb on + strand, within MPMX19_05974at 126.772 kb on + strand, within MPMX19_05974at 126.772 kb on + strand, within MPMX19_05974at 126.773 kb on - strand, within MPMX19_05974at 126.773 kb on - strand, within MPMX19_05974at 126.773 kb on - strand, within MPMX19_05974at 126.773 kb on - strand, within MPMX19_05974at 126.773 kb on - strand, within MPMX19_05974at 126.773 kb on - strand, within MPMX19_05974at 126.773 kb on - strand, within MPMX19_05974at 126.773 kb on - strand, within MPMX19_05974at 126.853 kb on + strand, within MPMX19_05974at 126.878 kb on - strand, within MPMX19_05974at 127.006 kb on + strand, within MPMX19_05974at 127.006 kb on + strand, within MPMX19_05974at 127.006 kb on + strand, within MPMX19_05974at 127.006 kb on + strand, within MPMX19_05974at 127.007 kb on - strand, within MPMX19_05974at 127.007 kb on - strand, within MPMX19_05974at 127.007 kb on - strand, within MPMX19_05974at 127.007 kb on - strand, within MPMX19_05974at 127.007 kb on - strand, within MPMX19_05974at 127.183 kb on - strand, within MPMX19_05974at 127.426 kb on + strandat 127.426 kb on + strandat 127.427 kb on - strandat 127.427 kb on - strandat 127.427 kb on - strandat 128.008 kb on + strand, within MPMX19_05975at 128.008 kb on + strand, within MPMX19_05975at 128.008 kb on + strand, within MPMX19_05975at 128.008 kb on + strand, within MPMX19_05975at 128.008 kb on + strand, within MPMX19_05975at 128.008 kb on + strand, within MPMX19_05975at 128.009 kb on - strand, within MPMX19_05975at 128.009 kb on - strand, within MPMX19_05975at 128.009 kb on - strand, within MPMX19_05975at 128.009 kb on - strand, within MPMX19_05975at 128.009 kb on - strand, within MPMX19_05975at 128.009 kb on - strand, within MPMX19_05975at 128.095 kb on + strand, within MPMX19_05975at 128.095 kb on + strand, within MPMX19_05975

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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125,016 + MPMX19_05973 0.62 +0.2
125,016 + MPMX19_05973 0.62 +0.0
125,016 + MPMX19_05973 0.62 +0.9
125,016 + MPMX19_05973 0.62 -1.0
125,016 + MPMX19_05973 0.62 -1.4
125,017 - MPMX19_05973 0.62 -1.4
125,017 - MPMX19_05973 0.62 +1.0
125,116 - MPMX19_05973 0.67 +0.0
125,211 + MPMX19_05973 0.73 +1.1
125,211 + MPMX19_05973 0.73 -0.3
125,211 + MPMX19_05973 0.73 +0.2
125,212 - MPMX19_05973 0.73 -1.7
125,212 - MPMX19_05973 0.73 -0.9
125,346 + MPMX19_05973 0.80 +0.1
125,346 + MPMX19_05973 0.80 +1.0
125,347 - MPMX19_05973 0.80 +0.4
125,400 + MPMX19_05973 0.83 +0.6
125,652 + +0.0
125,653 - -0.7
125,653 - -0.5
125,653 - -0.1
125,694 + +0.4
125,695 - +0.4
125,750 + -0.3
125,751 - +0.0
125,787 + +0.6
125,788 - +0.3
126,385 + MPMX19_05974 0.27 -1.5
126,385 + MPMX19_05974 0.27 +0.4
126,385 + MPMX19_05974 0.27 -0.4
126,385 + MPMX19_05974 0.27 -0.7
126,386 - MPMX19_05974 0.27 -1.6
126,386 - MPMX19_05974 0.27 -1.2
126,493 + MPMX19_05974 0.34 +0.1
126,493 + MPMX19_05974 0.34 -0.6
126,493 + MPMX19_05974 0.34 -0.4
126,493 + MPMX19_05974 0.34 +0.0
126,493 + MPMX19_05974 0.34 +1.0
126,493 + MPMX19_05974 0.34 -0.3
126,493 + MPMX19_05974 0.34 -0.3
126,493 + MPMX19_05974 0.34 -0.1
126,493 + MPMX19_05974 0.34 +1.1
126,493 + MPMX19_05974 0.34 -0.5
126,494 - MPMX19_05974 0.34 +0.6
126,494 - MPMX19_05974 0.34 -0.8
126,494 - MPMX19_05974 0.34 +0.9
126,494 - MPMX19_05974 0.34 -0.7
126,494 - MPMX19_05974 0.34 +0.0
126,494 - MPMX19_05974 0.34 -0.4
126,494 - MPMX19_05974 0.34 +0.7
126,494 - MPMX19_05974 0.34 +0.4
126,494 - MPMX19_05974 0.34 -0.1
126,494 - MPMX19_05974 0.34 -1.4
126,772 + MPMX19_05974 0.53 -0.1
126,772 + MPMX19_05974 0.53 -0.5
126,772 + MPMX19_05974 0.53 -0.6
126,772 + MPMX19_05974 0.53 -0.4
126,772 + MPMX19_05974 0.53 +0.0
126,773 - MPMX19_05974 0.53 -0.6
126,773 - MPMX19_05974 0.53 +0.0
126,773 - MPMX19_05974 0.53 -0.3
126,773 - MPMX19_05974 0.53 -0.7
126,773 - MPMX19_05974 0.53 -1.6
126,773 - MPMX19_05974 0.53 +0.7
126,773 - MPMX19_05974 0.53 +1.6
126,773 - MPMX19_05974 0.53 +0.6
126,853 + MPMX19_05974 0.58 -0.7
126,878 - MPMX19_05974 0.60 -0.7
127,006 + MPMX19_05974 0.69 -0.4
127,006 + MPMX19_05974 0.69 -1.0
127,006 + MPMX19_05974 0.69 -1.1
127,006 + MPMX19_05974 0.69 -0.3
127,007 - MPMX19_05974 0.69 -0.1
127,007 - MPMX19_05974 0.69 +0.6
127,007 - MPMX19_05974 0.69 +1.0
127,007 - MPMX19_05974 0.69 -0.4
127,007 - MPMX19_05974 0.69 -0.4
127,183 - MPMX19_05974 0.81 -0.4
127,426 + -1.1
127,426 + -2.5
127,427 - -0.5
127,427 - +0.6
127,427 - +2.2
128,008 + MPMX19_05975 0.21 -0.4
128,008 + MPMX19_05975 0.21 -2.1
128,008 + MPMX19_05975 0.21 -0.7
128,008 + MPMX19_05975 0.21 -0.8
128,008 + MPMX19_05975 0.21 -1.6
128,008 + MPMX19_05975 0.21 +0.3
128,009 - MPMX19_05975 0.21 -1.7
128,009 - MPMX19_05975 0.21 -0.1
128,009 - MPMX19_05975 0.21 -1.0
128,009 - MPMX19_05975 0.21 +0.3
128,009 - MPMX19_05975 0.21 +1.6
128,009 - MPMX19_05975 0.21 +0.3
128,095 + MPMX19_05975 0.26 +0.7
128,095 + MPMX19_05975 0.26 -0.4

Or see this region's nucleotide sequence