Strain Fitness in Azospirillum sp. SherDot2

Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05969

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	NL-CCM_agar
				remove
119,758	+	MPMX19_05968	0.21	+0.5
119,758	+	MPMX19_05968	0.21	-1.2
119,758	+	MPMX19_05968	0.21	-1.6
119,758	+	MPMX19_05968	0.21	+0.1
119,758	+	MPMX19_05968	0.21	+1.1
119,758	+	MPMX19_05968	0.21	-0.0
119,758	+	MPMX19_05968	0.21	-1.2
119,758	+	MPMX19_05968	0.21	-1.0
119,759	-	MPMX19_05968	0.22	-0.1
119,776	+	MPMX19_05968	0.23	+0.8
119,777	-	MPMX19_05968	0.23	-0.4
119,777	-	MPMX19_05968	0.23	-0.1
119,777	-	MPMX19_05968	0.23	-0.4
119,777	-	MPMX19_05968	0.23	-1.1
119,777	-	MPMX19_05968	0.23	-1.2
119,893	+	MPMX19_05968	0.34	+0.1
119,893	+	MPMX19_05968	0.34	-0.8
119,893	+	MPMX19_05968	0.34	+0.9
119,894	-	MPMX19_05968	0.34	-0.2
119,894	-	MPMX19_05968	0.34	+1.2
120,013	+	MPMX19_05968	0.45	-0.3
120,013	+	MPMX19_05968	0.45	-1.5
120,013	+	MPMX19_05968	0.45	-0.6
120,013	+	MPMX19_05968	0.45	-0.2
120,013	+	MPMX19_05968	0.45	-0.7
120,013	+	MPMX19_05968	0.45	-0.3
120,014	-	MPMX19_05968	0.45	-0.4
120,014	-	MPMX19_05968	0.45	-0.5
120,014	-	MPMX19_05968	0.45	+0.1
120,014	-	MPMX19_05968	0.45	-0.1
120,014	-	MPMX19_05968	0.45	+0.8
120,014	-	MPMX19_05968	0.45	+0.3
120,082	+	MPMX19_05968	0.51	+0.0
120,082	+	MPMX19_05968	0.51	+0.4
120,082	+	MPMX19_05968	0.51	-1.1
120,082	+	MPMX19_05968	0.51	-0.5
120,083	-	MPMX19_05968	0.51	-0.2
120,083	-	MPMX19_05968	0.51	+0.3
120,410	+	MPMX19_05968	0.81	-0.4
120,410	+	MPMX19_05968	0.81	-0.3
120,410	+	MPMX19_05968	0.81	+1.6
120,410	+	MPMX19_05968	0.81	-0.4
120,410	+	MPMX19_05968	0.81	-1.0
120,411	-	MPMX19_05968	0.81	-0.7
120,411	-	MPMX19_05968	0.81	-0.1
120,411	-	MPMX19_05968	0.81	+0.3
120,411	-	MPMX19_05968	0.81	+1.5
120,411	-	MPMX19_05968	0.81	-0.4
120,411	-	MPMX19_05968	0.81	-0.2
120,411	-	MPMX19_05968	0.81	+0.3
120,529	+			+0.3
120,529	+			-0.2
120,529	+			-0.9
120,529	+			-1.2
120,529	+			-0.1
120,529	+			+0.3
120,529	+			+0.0
120,529	+			+1.6
120,529	+			-0.2
120,529	+			-0.4
120,529	+			+0.3
120,530	-			+0.0
120,530	-			-0.9
120,530	-			+0.7
120,530	-			-0.0
120,530	-			-2.6
120,530	-			+0.3
120,530	-			-0.7
120,530	-			+0.2
120,530	-			-2.0
120,622	+			-0.1
120,675	+			+0.5
120,675	+			-0.5
120,675	+			-0.2
120,675	+			+1.3
120,675	+			-0.4
120,675	+			-0.5
120,675	+			-1.4
120,675	+			+0.0
120,676	-			-0.5
120,676	-			+0.4
120,705	+			+1.0
120,706	-			-0.9
120,706	-			-0.3
120,706	-			+1.0
120,750	+	MPMX19_05969	0.10	-0.1
120,750	+	MPMX19_05969	0.10	-0.6
120,750	+	MPMX19_05969	0.10	-0.2
120,750	+	MPMX19_05969	0.10	+0.0
120,750	+	MPMX19_05969	0.10	-0.2
120,750	+	MPMX19_05969	0.10	-0.7
120,750	+	MPMX19_05969	0.10	-0.2
120,751	-	MPMX19_05969	0.10	-1.1
120,751	-	MPMX19_05969	0.10	-0.4
120,751	-	MPMX19_05969	0.10	-0.9
120,751	-	MPMX19_05969	0.10	-0.1
120,751	-	MPMX19_05969	0.10	-1.6
120,751	-	MPMX19_05969	0.10	-0.9
120,915	+	MPMX19_05969	0.25	-0.6
120,915	+	MPMX19_05969	0.25	-0.5
120,915	+	MPMX19_05969	0.25	+0.9
120,915	+	MPMX19_05969	0.25	+0.1
120,915	+	MPMX19_05969	0.25	-0.4
120,915	+	MPMX19_05969	0.25	-0.2
120,915	+	MPMX19_05969	0.25	-0.3
120,915	+	MPMX19_05969	0.25	+1.1
120,915	+	MPMX19_05969	0.25	-2.6
120,915	+	MPMX19_05969	0.25	-0.7
120,915	+	MPMX19_05969	0.25	+0.0
120,915	+	MPMX19_05969	0.25	-0.5
120,915	+	MPMX19_05969	0.25	+1.3
120,915	+	MPMX19_05969	0.25	-0.6
120,915	+	MPMX19_05969	0.25	-0.3
120,915	+	MPMX19_05969	0.25	+0.4
120,915	+	MPMX19_05969	0.25	-0.6
120,915	+	MPMX19_05969	0.25	+0.0
120,915	+	MPMX19_05969	0.25	-1.8
120,915	+	MPMX19_05969	0.25	-0.5
120,916	-	MPMX19_05969	0.25	-2.0
120,916	-	MPMX19_05969	0.25	+0.0
120,916	-	MPMX19_05969	0.25	-2.1
120,916	-	MPMX19_05969	0.25	+0.0
120,916	-	MPMX19_05969	0.25	-1.5
120,916	-	MPMX19_05969	0.25	-1.6
120,916	-	MPMX19_05969	0.25	-0.7
120,916	-	MPMX19_05969	0.25	-1.9
120,916	-	MPMX19_05969	0.25	-0.2
120,916	-	MPMX19_05969	0.25	+1.0
120,916	-	MPMX19_05969	0.25	-0.5
120,916	-	MPMX19_05969	0.25	-1.1
120,933	+	MPMX19_05969	0.27	-0.7
120,933	+	MPMX19_05969	0.27	+0.3
120,933	+	MPMX19_05969	0.27	-1.1
120,934	-	MPMX19_05969	0.27	+0.2
120,934	-	MPMX19_05969	0.27	-0.6
120,934	-	MPMX19_05969	0.27	-0.3
121,206	+	MPMX19_05969	0.52	-0.2
121,206	+	MPMX19_05969	0.52	-0.8
121,207	-	MPMX19_05969	0.52	+0.2
121,207	-	MPMX19_05969	0.52	-2.1
121,207	-	MPMX19_05969	0.52	-1.0
121,224	+	MPMX19_05969	0.54	-1.4
121,224	+	MPMX19_05969	0.54	-0.5
121,224	+	MPMX19_05969	0.54	+0.7
121,224	+	MPMX19_05969	0.54	-1.2
121,224	+	MPMX19_05969	0.54	-0.8
121,224	+	MPMX19_05969	0.54	-0.5
121,224	+	MPMX19_05969	0.54	-0.5
121,224	+	MPMX19_05969	0.54	+0.8
121,224	+	MPMX19_05969	0.54	-1.0
121,224	+	MPMX19_05969	0.54	-0.9
121,224	+	MPMX19_05969	0.54	-0.5
121,224	+	MPMX19_05969	0.54	+0.5
121,224	+	MPMX19_05969	0.54	+0.6
121,224	+	MPMX19_05969	0.54	-2.0
121,224	+	MPMX19_05969	0.54	-2.3
121,224	+	MPMX19_05969	0.54	+0.3
121,225	-	MPMX19_05969	0.54	-0.9
121,225	-	MPMX19_05969	0.54	-0.3
121,225	-	MPMX19_05969	0.54	-0.7
121,225	-	MPMX19_05969	0.54	+0.3
121,225	-	MPMX19_05969	0.54	+0.1
121,225	-	MPMX19_05969	0.54	-0.7
121,225	-	MPMX19_05969	0.54	-0.6
121,225	-	MPMX19_05969	0.54	-1.0
121,225	-	MPMX19_05969	0.54	-0.2
121,225	-	MPMX19_05969	0.54	-0.4
121,225	-	MPMX19_05969	0.54	-0.3
121,225	-	MPMX19_05969	0.54	+1.0
121,225	-	MPMX19_05969	0.54	+0.1
121,225	-	MPMX19_05969	0.54	-0.3
121,225	-	MPMX19_05969	0.54	+0.3
121,225	-	MPMX19_05969	0.54	-0.4
121,225	-	MPMX19_05969	0.54	-2.4
121,225	-	MPMX19_05969	0.54	+0.4
121,225	-	MPMX19_05969	0.54	+0.6
121,225	-	MPMX19_05969	0.54	-0.2
121,225	-	MPMX19_05969	0.54	-0.4
121,281	+	MPMX19_05969	0.59	+1.0
121,281	+	MPMX19_05969	0.59	-0.7
121,281	+	MPMX19_05969	0.59	-0.1
121,281	+	MPMX19_05969	0.59	-0.5
121,281	+	MPMX19_05969	0.59	+0.0
121,281	+	MPMX19_05969	0.59	+0.0
121,281	+	MPMX19_05969	0.59	-0.7
121,281	+	MPMX19_05969	0.59	+0.2
121,281	+	MPMX19_05969	0.59	+0.0
121,281	+	MPMX19_05969	0.59	-0.3
121,281	+	MPMX19_05969	0.59	-1.0
121,282	-	MPMX19_05969	0.59	-0.8
121,282	-	MPMX19_05969	0.59	+0.6
121,282	-	MPMX19_05969	0.59	+0.2
121,282	-	MPMX19_05969	0.59	+0.3
121,282	-	MPMX19_05969	0.59	-0.5
121,282	-	MPMX19_05969	0.59	-0.0
121,282	-	MPMX19_05969	0.59	-0.2
121,282	-	MPMX19_05969	0.59	-1.7
121,282	-	MPMX19_05969	0.59	+1.3
121,282	-	MPMX19_05969	0.59	+0.3
121,282	-	MPMX19_05969	0.59	-0.9
121,282	-	MPMX19_05969	0.59	-0.7
121,282	-	MPMX19_05969	0.59	-1.2
121,282	-	MPMX19_05969	0.59	-1.2
121,282	-	MPMX19_05969	0.59	-0.2
121,282	-	MPMX19_05969	0.59	-0.1
121,354	-	MPMX19_05969	0.66	-0.7
121,354	-	MPMX19_05969	0.66	-1.2
121,354	-	MPMX19_05969	0.66	+0.0
121,354	-	MPMX19_05969	0.66	-0.7
121,701	+			-1.9
121,701	+			-0.1
121,747	+			-0.7
121,748	-			-0.5
121,748	-			-0.3
121,748	-			-1.3
121,841	+	MPMX19_05970	0.11	+0.9
121,841	+	MPMX19_05970	0.11	+0.6
121,841	+	MPMX19_05970	0.11	+0.2
121,842	-	MPMX19_05970	0.11	-0.7
121,842	-	MPMX19_05970	0.11	-0.2
121,842	-	MPMX19_05970	0.11	+0.3
121,842	-	MPMX19_05970	0.11	-1.3
121,842	-	MPMX19_05970	0.11	-0.4
121,955	+	MPMX19_05970	0.24	+0.2
121,956	-	MPMX19_05970	0.24	-0.8
121,956	-	MPMX19_05970	0.24	-0.6
122,032	+	MPMX19_05970	0.33	-1.3
122,033	-	MPMX19_05970	0.33	-0.2
122,033	-	MPMX19_05970	0.33	-0.6
122,033	-	MPMX19_05970	0.33	+2.0
122,168	+	MPMX19_05970	0.49	-1.2
122,168	+	MPMX19_05970	0.49	+2.6
122,168	+	MPMX19_05970	0.49	+0.7
122,168	+	MPMX19_05970	0.49	-1.5
122,169	-	MPMX19_05970	0.49	+0.5
122,174	+	MPMX19_05970	0.49	-0.4
122,174	+	MPMX19_05970	0.49	+0.6
122,174	+	MPMX19_05970	0.49	-0.3
122,174	+	MPMX19_05970	0.49	-0.8
122,174	+	MPMX19_05970	0.49	-0.8
122,174	+	MPMX19_05970	0.49	+0.0
122,174	+	MPMX19_05970	0.49	-0.5
122,174	+	MPMX19_05970	0.49	-1.9
122,174	+	MPMX19_05970	0.49	-1.7
122,174	+	MPMX19_05970	0.49	+0.3
122,174	+	MPMX19_05970	0.49	-0.8
122,174	+	MPMX19_05970	0.49	-1.6
122,174	+	MPMX19_05970	0.49	-0.3
122,174	+	MPMX19_05970	0.49	-0.5
122,175	-	MPMX19_05970	0.49	+0.1
122,175	-	MPMX19_05970	0.49	+0.4
122,175	-	MPMX19_05970	0.49	+0.3
122,175	-	MPMX19_05970	0.49	-0.1
122,175	-	MPMX19_05970	0.49	-0.9
122,175	-	MPMX19_05970	0.49	+0.9
122,175	-	MPMX19_05970	0.49	+1.6
122,175	-	MPMX19_05970	0.49	-0.3
122,258	+	MPMX19_05970	0.59	+1.0
122,259	-	MPMX19_05970	0.59	-2.3
122,291	+	MPMX19_05970	0.63	-0.4
122,291	+	MPMX19_05970	0.63	-1.9
122,291	+	MPMX19_05970	0.63	-0.4
122,292	-	MPMX19_05970	0.63	+1.1
122,292	-	MPMX19_05970	0.63	+0.1
122,292	-	MPMX19_05970	0.63	-1.0
122,292	-	MPMX19_05970	0.63	+0.2
122,292	-	MPMX19_05970	0.63	+0.9
122,292	-	MPMX19_05970	0.63	-0.9
122,292	-	MPMX19_05970	0.63	-1.7
122,339	+	MPMX19_05970	0.68	+1.4
122,339	+	MPMX19_05970	0.68	-2.2
122,339	+	MPMX19_05970	0.68	-1.9
122,340	-	MPMX19_05970	0.68	+0.6
122,340	-	MPMX19_05970	0.68	-0.6
122,340	-	MPMX19_05970	0.68	-0.3
122,414	+	MPMX19_05970	0.77	-0.2
122,414	+	MPMX19_05970	0.77	-1.1
122,414	+	MPMX19_05970	0.77	-0.4
122,414	+	MPMX19_05970	0.77	+0.2
122,414	+	MPMX19_05970	0.77	+0.0
122,414	+	MPMX19_05970	0.77	-0.0
122,415	-	MPMX19_05970	0.77	-0.4
122,415	-	MPMX19_05970	0.77	+0.2
122,415	-	MPMX19_05970	0.77	-1.0
122,415	-	MPMX19_05970	0.77	-1.2
122,477	+	MPMX19_05970	0.84	-0.1
122,478	-	MPMX19_05970	0.84	-0.9
122,478	-	MPMX19_05970	0.84	-1.3
122,540	+			-1.0
122,540	+			-1.0
122,540	+			-1.3
122,541	-			-0.6
122,541	-			-0.4
122,541	-			-0.4
122,541	-			+0.9
122,541	-			-0.4
122,541	-			-0.1
122,576	+			+0.3
122,576	+			-0.1
122,576	+			+1.0
122,577	-			+0.6
122,577	-			+1.0
122,577	-			-1.3
122,577	-			+0.6
122,577	-			+0.7
122,577	-			-1.9
122,577	-			-0.6
122,577	-			-1.0
122,577	-			+0.2
122,716	+	MPMX19_05971	0.12	-1.2
122,717	-	MPMX19_05971	0.12	-0.7
122,717	-	MPMX19_05971	0.12	-0.2
122,717	-	MPMX19_05971	0.12	-0.8
122,717	-	MPMX19_05971	0.12	-1.4
122,717	-	MPMX19_05971	0.12	-1.6
122,717	-	MPMX19_05971	0.12	+0.9
122,717	-	MPMX19_05971	0.12	+1.0
122,720	+	MPMX19_05971	0.12	-0.3
122,720	+	MPMX19_05971	0.12	-0.7
122,721	-	MPMX19_05971	0.12	+0.9

Or see this region's nucleotide sequence