Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05413 and MPMX19_05414 are separated by 139 nucleotides MPMX19_05414 and MPMX19_05415 are separated by 142 nucleotides MPMX19_05415 and MPMX19_05416 are separated by 129 nucleotides
MPMX19_05413: MPMX19_05413 - hypothetical protein, at 96,160 to 99,303
_05413
MPMX19_05414: MPMX19_05414 - hypothetical protein, at 99,443 to 99,979
_05414
MPMX19_05415: MPMX19_05415 - Homogentisate 1,2-dioxygenase, at 100,122 to 101,426
_05415
MPMX19_05416: MPMX19_05416 - hypothetical protein, at 101,556 to 106,865
_05416
Position (kb) 100
101
102 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 99.209 kb on + strand at 99.209 kb on + strand at 99.209 kb on + strand at 99.209 kb on + strand at 99.209 kb on + strand at 99.209 kb on + strand at 99.209 kb on + strand at 99.210 kb on - strand at 99.210 kb on - strand at 99.210 kb on - strand at 99.384 kb on + strand at 99.385 kb on - strand at 99.385 kb on - strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.468 kb on + strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 99.469 kb on - strand at 100.174 kb on + strand at 100.174 kb on + strand at 100.175 kb on - strand at 100.175 kb on - strand at 100.390 kb on + strand, within MPMX19_05415 at 100.390 kb on + strand, within MPMX19_05415 at 100.390 kb on + strand, within MPMX19_05415 at 100.391 kb on - strand, within MPMX19_05415 at 100.391 kb on - strand, within MPMX19_05415 at 100.539 kb on + strand, within MPMX19_05415 at 100.539 kb on + strand, within MPMX19_05415 at 100.539 kb on + strand, within MPMX19_05415 at 100.540 kb on - strand, within MPMX19_05415 at 100.540 kb on - strand, within MPMX19_05415 at 100.540 kb on - strand, within MPMX19_05415 at 100.609 kb on + strand, within MPMX19_05415 at 100.609 kb on + strand, within MPMX19_05415 at 100.609 kb on + strand, within MPMX19_05415 at 100.609 kb on + strand, within MPMX19_05415 at 100.610 kb on - strand, within MPMX19_05415 at 100.610 kb on - strand, within MPMX19_05415 at 100.610 kb on - strand, within MPMX19_05415 at 100.610 kb on - strand, within MPMX19_05415 at 100.610 kb on - strand, within MPMX19_05415 at 100.610 kb on - strand, within MPMX19_05415 at 100.732 kb on + strand, within MPMX19_05415 at 100.732 kb on + strand, within MPMX19_05415 at 100.732 kb on + strand, within MPMX19_05415 at 100.732 kb on + strand, within MPMX19_05415 at 100.733 kb on - strand, within MPMX19_05415 at 100.837 kb on + strand, within MPMX19_05415 at 100.837 kb on + strand, within MPMX19_05415 at 100.837 kb on + strand, within MPMX19_05415 at 100.838 kb on - strand, within MPMX19_05415 at 100.838 kb on - strand, within MPMX19_05415 at 100.838 kb on - strand, within MPMX19_05415 at 100.993 kb on + strand, within MPMX19_05415 at 100.993 kb on + strand, within MPMX19_05415 at 100.993 kb on + strand, within MPMX19_05415 at 100.993 kb on + strand, within MPMX19_05415 at 100.994 kb on - strand, within MPMX19_05415 at 100.994 kb on - strand, within MPMX19_05415 at 100.994 kb on - strand, within MPMX19_05415 at 100.994 kb on - strand, within MPMX19_05415 at 100.994 kb on - strand, within MPMX19_05415 at 101.029 kb on + strand, within MPMX19_05415 at 101.243 kb on - strand, within MPMX19_05415 at 101.308 kb on + strand at 101.308 kb on + strand at 101.309 kb on - strand at 101.309 kb on - strand at 101.317 kb on + strand at 101.317 kb on + strand at 101.318 kb on - strand at 101.404 kb on + strand at 101.404 kb on + strand at 101.405 kb on - strand at 101.405 kb on - strand at 101.405 kb on - strand at 101.632 kb on + strand at 101.632 kb on + strand at 101.632 kb on + strand at 101.632 kb on + strand at 101.632 kb on + strand at 101.632 kb on + strand at 101.633 kb on - strand at 101.633 kb on - strand at 101.633 kb on - strand at 101.633 kb on - strand at 101.633 kb on - strand at 101.683 kb on + strand at 101.683 kb on + strand at 101.683 kb on + strand at 101.683 kb on + strand at 101.684 kb on - strand at 101.873 kb on + strand at 101.873 kb on + strand at 101.874 kb on - strand at 101.887 kb on + strand at 101.888 kb on - strand at 101.888 kb on - strand at 101.888 kb on - strand at 102.008 kb on - strand at 102.035 kb on - strand at 102.035 kb on - strand at 102.049 kb on + strand at 102.050 kb on - strand at 102.050 kb on - strand at 102.052 kb on + strand at 102.052 kb on + strand at 102.052 kb on + strand at 102.052 kb on + strand at 102.052 kb on + strand at 102.052 kb on + strand at 102.052 kb on + strand at 102.052 kb on + strand at 102.053 kb on - strand at 102.053 kb on - strand at 102.053 kb on - strand at 102.053 kb on - strand at 102.053 kb on - strand at 102.053 kb on - strand at 102.053 kb on - strand at 102.053 kb on - strand at 102.053 kb on - strand at 102.053 kb on - strand at 102.053 kb on - strand at 102.236 kb on - strand, within MPMX19_05416
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 99,209 + +0.0 99,209 + +1.2 99,209 + -0.9 99,209 + -0.5 99,209 + -1.1 99,209 + -0.4 99,209 + -0.6 99,210 - +0.7 99,210 - -1.0 99,210 - +0.0 99,384 + -0.4 99,385 - -0.3 99,385 - -0.4 99,468 + -0.3 99,468 + -0.1 99,468 + -1.7 99,468 + +1.6 99,468 + -0.4 99,468 + -1.0 99,468 + -0.8 99,468 + +0.0 99,468 + -0.1 99,468 + +0.0 99,468 + -1.0 99,468 + +0.1 99,468 + -3.5 99,468 + +0.5 99,468 + +0.5 99,469 - -0.4 99,469 - -1.9 99,469 - -0.3 99,469 - -0.2 99,469 - +0.4 99,469 - -0.1 99,469 - +0.0 99,469 - -2.3 99,469 - -0.5 99,469 - -1.6 100,174 + -1.2 100,174 + -0.1 100,175 - -0.1 100,175 - +0.3 100,390 + MPMX19_05415 0.21 -0.4 100,390 + MPMX19_05415 0.21 +0.4 100,390 + MPMX19_05415 0.21 -0.1 100,391 - MPMX19_05415 0.21 +0.9 100,391 - MPMX19_05415 0.21 -1.4 100,539 + MPMX19_05415 0.32 +0.0 100,539 + MPMX19_05415 0.32 +1.1 100,539 + MPMX19_05415 0.32 +0.3 100,540 - MPMX19_05415 0.32 +0.0 100,540 - MPMX19_05415 0.32 -0.1 100,540 - MPMX19_05415 0.32 -0.7 100,609 + MPMX19_05415 0.37 -0.1 100,609 + MPMX19_05415 0.37 +0.1 100,609 + MPMX19_05415 0.37 -0.2 100,609 + MPMX19_05415 0.37 -1.6 100,610 - MPMX19_05415 0.37 +0.3 100,610 - MPMX19_05415 0.37 -0.5 100,610 - MPMX19_05415 0.37 -2.1 100,610 - MPMX19_05415 0.37 -0.4 100,610 - MPMX19_05415 0.37 -1.3 100,610 - MPMX19_05415 0.37 +0.0 100,732 + MPMX19_05415 0.47 +0.5 100,732 + MPMX19_05415 0.47 +0.0 100,732 + MPMX19_05415 0.47 +0.8 100,732 + MPMX19_05415 0.47 +0.4 100,733 - MPMX19_05415 0.47 +0.3 100,837 + MPMX19_05415 0.55 -0.4 100,837 + MPMX19_05415 0.55 -0.7 100,837 + MPMX19_05415 0.55 +0.3 100,838 - MPMX19_05415 0.55 +0.0 100,838 - MPMX19_05415 0.55 -1.7 100,838 - MPMX19_05415 0.55 +0.7 100,993 + MPMX19_05415 0.67 -1.6 100,993 + MPMX19_05415 0.67 -0.5 100,993 + MPMX19_05415 0.67 +1.1 100,993 + MPMX19_05415 0.67 -0.9 100,994 - MPMX19_05415 0.67 +0.5 100,994 - MPMX19_05415 0.67 -0.6 100,994 - MPMX19_05415 0.67 +0.0 100,994 - MPMX19_05415 0.67 -0.3 100,994 - MPMX19_05415 0.67 -0.6 101,029 + MPMX19_05415 0.70 -1.6 101,243 - MPMX19_05415 0.86 +0.9 101,308 + -1.7 101,308 + +0.0 101,309 - +0.7 101,309 - +0.8 101,317 + -0.1 101,317 + +0.1 101,318 - -0.1 101,404 + -0.1 101,404 + -1.4 101,405 - -0.3 101,405 - -1.6 101,405 - -1.1 101,632 + +0.0 101,632 + -1.5 101,632 + -0.5 101,632 + -0.2 101,632 + -0.6 101,632 + +0.1 101,633 - +0.8 101,633 - -0.6 101,633 - +0.4 101,633 - +0.7 101,633 - +0.0 101,683 + -0.7 101,683 + +0.2 101,683 + -0.5 101,683 + -1.3 101,684 - -0.7 101,873 + -2.0 101,873 + -0.4 101,874 - +0.2 101,887 + +0.5 101,888 - -1.2 101,888 - +0.7 101,888 - +1.6 102,008 - +0.2 102,035 - -0.7 102,035 - -0.7 102,049 + +0.1 102,050 - -0.2 102,050 - -0.7 102,052 + -0.4 102,052 + -0.4 102,052 + -0.6 102,052 + -0.7 102,052 + -0.5 102,052 + -0.7 102,052 + +0.7 102,052 + +1.0 102,053 - -0.5 102,053 - +0.7 102,053 - +0.1 102,053 - +0.6 102,053 - -0.9 102,053 - -0.8 102,053 - -1.6 102,053 - -0.7 102,053 - +0.0 102,053 - -1.4 102,053 - -0.1 102,236 - MPMX19_05416 0.13 -0.9
Or see this region's nucleotide sequence