Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05374 and MPMX19_05375 are separated by 27 nucleotides MPMX19_05375 and MPMX19_05376 are separated by 159 nucleotides
MPMX19_05374: MPMX19_05374 - hypothetical protein, at 46,752 to 48,593
_05374
MPMX19_05375: MPMX19_05375 - hypothetical protein, at 48,621 to 49,046
_05375
MPMX19_05376: MPMX19_05376 - hypothetical protein, at 49,206 to 49,976
_05376
Position (kb) 48
49
50 Strain fitness (log2 ratio) -2
-1
0
1
2 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.961 kb on + strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.962 kb on - strand, within MPMX19_05374 at 47.991 kb on + strand, within MPMX19_05374 at 47.991 kb on + strand, within MPMX19_05374 at 47.991 kb on + strand, within MPMX19_05374 at 47.991 kb on + strand, within MPMX19_05374 at 47.991 kb on + strand, within MPMX19_05374 at 47.991 kb on + strand, within MPMX19_05374 at 47.991 kb on + strand, within MPMX19_05374 at 47.991 kb on + strand, within MPMX19_05374 at 47.992 kb on - strand, within MPMX19_05374 at 47.992 kb on - strand, within MPMX19_05374 at 47.992 kb on - strand, within MPMX19_05374 at 47.992 kb on - strand, within MPMX19_05374 at 47.992 kb on - strand, within MPMX19_05374 at 47.992 kb on - strand, within MPMX19_05374 at 47.992 kb on - strand, within MPMX19_05374 at 48.154 kb on - strand, within MPMX19_05374 at 48.154 kb on - strand, within MPMX19_05374 at 48.229 kb on - strand, within MPMX19_05374 at 48.229 kb on - strand, within MPMX19_05374 at 48.229 kb on - strand, within MPMX19_05374 at 48.229 kb on - strand, within MPMX19_05374 at 48.229 kb on - strand, within MPMX19_05374 at 48.345 kb on + strand, within MPMX19_05374 at 48.345 kb on + strand, within MPMX19_05374 at 48.345 kb on + strand, within MPMX19_05374 at 48.346 kb on - strand, within MPMX19_05374 at 48.453 kb on + strand at 48.454 kb on - strand at 48.454 kb on - strand at 48.454 kb on - strand at 48.454 kb on - strand at 48.454 kb on - strand at 48.454 kb on - strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.498 kb on + strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.499 kb on - strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.500 kb on + strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.501 kb on - strand at 48.592 kb on - strand at 48.592 kb on - strand at 48.592 kb on - strand at 48.729 kb on + strand, within MPMX19_05375 at 48.729 kb on + strand, within MPMX19_05375 at 48.729 kb on + strand, within MPMX19_05375 at 48.729 kb on + strand, within MPMX19_05375 at 48.729 kb on + strand, within MPMX19_05375 at 48.729 kb on + strand, within MPMX19_05375 at 48.729 kb on + strand, within MPMX19_05375 at 48.729 kb on + strand, within MPMX19_05375 at 48.729 kb on + strand, within MPMX19_05375 at 48.730 kb on - strand, within MPMX19_05375 at 48.730 kb on - strand, within MPMX19_05375 at 48.730 kb on - strand, within MPMX19_05375 at 48.730 kb on - strand, within MPMX19_05375 at 48.730 kb on - strand, within MPMX19_05375 at 48.730 kb on - strand, within MPMX19_05375 at 48.730 kb on - strand, within MPMX19_05375 at 48.731 kb on + strand, within MPMX19_05375 at 49.095 kb on + strand at 49.095 kb on + strand at 49.096 kb on - strand at 49.096 kb on - strand at 49.229 kb on + strand at 49.229 kb on + strand at 49.229 kb on + strand at 49.230 kb on - strand at 49.230 kb on - strand at 49.230 kb on - strand at 49.230 kb on - strand at 49.614 kb on + strand, within MPMX19_05376 at 49.614 kb on + strand, within MPMX19_05376 at 49.614 kb on + strand, within MPMX19_05376 at 49.614 kb on + strand, within MPMX19_05376 at 49.614 kb on + strand, within MPMX19_05376 at 49.614 kb on + strand, within MPMX19_05376 at 49.614 kb on + strand, within MPMX19_05376 at 49.614 kb on + strand, within MPMX19_05376 at 49.614 kb on + strand, within MPMX19_05376 at 49.615 kb on - strand, within MPMX19_05376 at 49.615 kb on - strand, within MPMX19_05376 at 49.615 kb on - strand, within MPMX19_05376 at 49.615 kb on - strand, within MPMX19_05376 at 49.615 kb on - strand, within MPMX19_05376 at 49.615 kb on - strand, within MPMX19_05376 at 49.615 kb on - strand, within MPMX19_05376 at 49.615 kb on - strand, within MPMX19_05376 at 49.615 kb on - strand, within MPMX19_05376 at 49.615 kb on - strand, within MPMX19_05376 at 49.615 kb on - strand, within MPMX19_05376 at 50.017 kb on + strand at 50.017 kb on + strand at 50.018 kb on - strand at 50.018 kb on - strand at 50.018 kb on - strand at 50.018 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 47,961 + MPMX19_05374 0.66 +0.0 47,961 + MPMX19_05374 0.66 -0.7 47,961 + MPMX19_05374 0.66 -0.6 47,961 + MPMX19_05374 0.66 -0.6 47,961 + MPMX19_05374 0.66 -0.9 47,961 + MPMX19_05374 0.66 +1.1 47,961 + MPMX19_05374 0.66 -0.6 47,961 + MPMX19_05374 0.66 -0.4 47,961 + MPMX19_05374 0.66 +1.0 47,961 + MPMX19_05374 0.66 -1.7 47,961 + MPMX19_05374 0.66 +1.0 47,961 + MPMX19_05374 0.66 +0.0 47,961 + MPMX19_05374 0.66 -0.1 47,961 + MPMX19_05374 0.66 +0.7 47,961 + MPMX19_05374 0.66 -2.0 47,961 + MPMX19_05374 0.66 +0.2 47,961 + MPMX19_05374 0.66 -0.5 47,961 + MPMX19_05374 0.66 -0.7 47,961 + MPMX19_05374 0.66 +0.0 47,961 + MPMX19_05374 0.66 +0.3 47,961 + MPMX19_05374 0.66 -0.9 47,962 - MPMX19_05374 0.66 +0.6 47,962 - MPMX19_05374 0.66 -0.6 47,962 - MPMX19_05374 0.66 +1.1 47,962 - MPMX19_05374 0.66 -0.6 47,962 - MPMX19_05374 0.66 +0.1 47,962 - MPMX19_05374 0.66 -1.4 47,962 - MPMX19_05374 0.66 -0.8 47,962 - MPMX19_05374 0.66 +0.1 47,962 - MPMX19_05374 0.66 -0.4 47,962 - MPMX19_05374 0.66 -0.3 47,962 - MPMX19_05374 0.66 -1.3 47,962 - MPMX19_05374 0.66 -0.2 47,962 - MPMX19_05374 0.66 +0.1 47,962 - MPMX19_05374 0.66 -0.9 47,991 + MPMX19_05374 0.67 -0.7 47,991 + MPMX19_05374 0.67 +0.9 47,991 + MPMX19_05374 0.67 -0.9 47,991 + MPMX19_05374 0.67 +0.1 47,991 + MPMX19_05374 0.67 +2.0 47,991 + MPMX19_05374 0.67 +1.1 47,991 + MPMX19_05374 0.67 -0.5 47,991 + MPMX19_05374 0.67 -0.4 47,992 - MPMX19_05374 0.67 -0.4 47,992 - MPMX19_05374 0.67 -0.6 47,992 - MPMX19_05374 0.67 +0.6 47,992 - MPMX19_05374 0.67 -0.1 47,992 - MPMX19_05374 0.67 +0.3 47,992 - MPMX19_05374 0.67 -1.2 47,992 - MPMX19_05374 0.67 +0.8 48,154 - MPMX19_05374 0.76 +0.3 48,154 - MPMX19_05374 0.76 +0.7 48,229 - MPMX19_05374 0.80 -1.1 48,229 - MPMX19_05374 0.80 +0.0 48,229 - MPMX19_05374 0.80 -1.2 48,229 - MPMX19_05374 0.80 +0.2 48,229 - MPMX19_05374 0.80 -0.7 48,345 + MPMX19_05374 0.86 -1.6 48,345 + MPMX19_05374 0.86 +0.5 48,345 + MPMX19_05374 0.86 +0.5 48,346 - MPMX19_05374 0.87 +0.2 48,453 + -1.1 48,454 - -1.0 48,454 - -2.0 48,454 - -0.1 48,454 - -0.1 48,454 - -0.9 48,454 - -0.4 48,498 + +0.7 48,498 + +0.4 48,498 + +0.0 48,498 + -0.5 48,498 + +1.4 48,498 + -1.1 48,498 + -0.3 48,498 + +1.3 48,498 + +0.9 48,498 + -1.1 48,498 + -1.7 48,498 + +0.5 48,498 + -1.4 48,498 + +0.6 48,498 + -1.8 48,499 - +0.4 48,499 - -2.0 48,499 - -0.7 48,499 - -0.5 48,499 - -0.3 48,499 - -0.6 48,499 - -0.1 48,499 - -1.8 48,499 - -1.3 48,499 - -1.4 48,499 - -1.0 48,499 - +0.6 48,499 - -0.3 48,499 - -0.5 48,499 - -1.4 48,499 - -1.9 48,500 + +0.6 48,500 + -0.3 48,500 + -1.3 48,500 + +1.4 48,500 + +1.5 48,500 + -0.6 48,500 + -1.8 48,500 + -2.3 48,500 + -2.0 48,500 + +1.1 48,500 + -0.2 48,500 + +0.1 48,500 + -0.7 48,500 + -1.1 48,500 + -0.8 48,500 + -0.6 48,500 + +0.7 48,500 + -1.4 48,501 - -0.4 48,501 - +0.2 48,501 - +0.6 48,501 - -0.8 48,501 - +0.0 48,501 - -2.1 48,501 - -0.4 48,501 - -0.6 48,501 - -0.3 48,501 - +1.6 48,501 - +0.5 48,501 - -1.1 48,501 - -1.2 48,501 - -0.5 48,501 - +1.2 48,501 - -0.6 48,501 - -0.5 48,501 - +0.0 48,501 - -1.0 48,501 - -2.0 48,501 - -1.1 48,501 - -0.8 48,501 - +0.9 48,501 - +0.2 48,501 - -0.9 48,592 - -0.2 48,592 - -1.5 48,592 - -0.7 48,729 + MPMX19_05375 0.25 -0.7 48,729 + MPMX19_05375 0.25 +0.6 48,729 + MPMX19_05375 0.25 +0.4 48,729 + MPMX19_05375 0.25 -1.7 48,729 + MPMX19_05375 0.25 -0.7 48,729 + MPMX19_05375 0.25 -0.9 48,729 + MPMX19_05375 0.25 -0.4 48,729 + MPMX19_05375 0.25 -0.7 48,729 + MPMX19_05375 0.25 +0.1 48,730 - MPMX19_05375 0.26 +0.5 48,730 - MPMX19_05375 0.26 -0.1 48,730 - MPMX19_05375 0.26 -0.5 48,730 - MPMX19_05375 0.26 -0.1 48,730 - MPMX19_05375 0.26 +0.3 48,730 - MPMX19_05375 0.26 +0.0 48,730 - MPMX19_05375 0.26 -0.4 48,731 + MPMX19_05375 0.26 +0.4 49,095 + -0.6 49,095 + -0.9 49,096 - +0.7 49,096 - -0.5 49,229 + +0.7 49,229 + +0.4 49,229 + -0.6 49,230 - -2.5 49,230 - -0.8 49,230 - +0.8 49,230 - +0.6 49,614 + MPMX19_05376 0.53 -1.5 49,614 + MPMX19_05376 0.53 -0.7 49,614 + MPMX19_05376 0.53 -1.7 49,614 + MPMX19_05376 0.53 -0.6 49,614 + MPMX19_05376 0.53 +1.2 49,614 + MPMX19_05376 0.53 +0.2 49,614 + MPMX19_05376 0.53 -1.0 49,614 + MPMX19_05376 0.53 +0.5 49,614 + MPMX19_05376 0.53 +0.6 49,615 - MPMX19_05376 0.53 -0.1 49,615 - MPMX19_05376 0.53 +0.7 49,615 - MPMX19_05376 0.53 -0.5 49,615 - MPMX19_05376 0.53 -0.8 49,615 - MPMX19_05376 0.53 -0.1 49,615 - MPMX19_05376 0.53 -0.2 49,615 - MPMX19_05376 0.53 -1.7 49,615 - MPMX19_05376 0.53 -0.3 49,615 - MPMX19_05376 0.53 -1.4 49,615 - MPMX19_05376 0.53 -0.3 49,615 - MPMX19_05376 0.53 +0.4 50,017 + +0.3 50,017 + +2.0 50,018 - +1.3 50,018 - -0.4 50,018 - -1.2 50,018 - -2.0
Or see this region's nucleotide sequence