Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04567

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04565 and MPMX19_04566 overlap by 112 nucleotidesMPMX19_04566 and MPMX19_04567 are separated by 79 nucleotidesMPMX19_04567 and MPMX19_04568 are separated by 6 nucleotidesMPMX19_04568 and MPMX19_04569 are separated by 175 nucleotides MPMX19_04565: MPMX19_04565 - HTH-type transcriptional regulator PgrR, at 945,608 to 946,528 _04565 MPMX19_04566: MPMX19_04566 - hypothetical protein, at 946,417 to 947,196 _04566 MPMX19_04567: MPMX19_04567 - hypothetical protein, at 947,276 to 947,656 _04567 MPMX19_04568: MPMX19_04568 - hypothetical protein, at 947,663 to 948,064 _04568 MPMX19_04569: MPMX19_04569 - Anti-sigma-F factor NrsF, at 948,240 to 948,875 _04569 Position (kb) 947 948Strain fitness (log2 ratio) -2 -1 0 1 2at 946.574 kb on + strand, within MPMX19_04566at 946.574 kb on + strand, within MPMX19_04566at 946.712 kb on + strand, within MPMX19_04566at 946.712 kb on + strand, within MPMX19_04566at 946.712 kb on + strand, within MPMX19_04566at 946.712 kb on + strand, within MPMX19_04566at 946.712 kb on + strand, within MPMX19_04566at 946.713 kb on - strand, within MPMX19_04566at 946.713 kb on - strand, within MPMX19_04566at 946.713 kb on - strand, within MPMX19_04566at 946.747 kb on + strand, within MPMX19_04566at 946.747 kb on + strand, within MPMX19_04566at 946.747 kb on + strand, within MPMX19_04566at 946.747 kb on + strand, within MPMX19_04566at 946.748 kb on - strand, within MPMX19_04566at 946.748 kb on - strand, within MPMX19_04566at 946.748 kb on - strand, within MPMX19_04566at 946.748 kb on - strand, within MPMX19_04566at 946.961 kb on + strand, within MPMX19_04566at 946.962 kb on - strand, within MPMX19_04566at 946.962 kb on - strand, within MPMX19_04566at 946.962 kb on - strand, within MPMX19_04566at 946.994 kb on + strand, within MPMX19_04566at 946.994 kb on + strand, within MPMX19_04566at 946.995 kb on - strand, within MPMX19_04566at 946.995 kb on - strand, within MPMX19_04566at 946.995 kb on - strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.013 kb on - strand, within MPMX19_04566at 947.013 kb on - strand, within MPMX19_04566at 947.013 kb on - strand, within MPMX19_04566at 947.013 kb on - strand, within MPMX19_04566at 947.013 kb on - strand, within MPMX19_04566at 947.013 kb on - strand, within MPMX19_04566at 947.013 kb on - strand, within MPMX19_04566at 947.013 kb on - strand, within MPMX19_04566at 947.013 kb on - strand, within MPMX19_04566at 947.013 kb on - strand, within MPMX19_04566at 947.013 kb on - strand, within MPMX19_04566at 947.058 kb on - strand, within MPMX19_04566at 947.089 kb on - strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.253 kb on + strandat 947.270 kb on + strandat 947.270 kb on + strandat 947.270 kb on + strandat 947.271 kb on - strandat 947.271 kb on - strandat 947.271 kb on - strandat 947.271 kb on - strandat 947.271 kb on - strandat 947.277 kb on + strandat 947.277 kb on + strandat 947.277 kb on + strandat 947.278 kb on - strandat 947.278 kb on - strandat 947.278 kb on - strandat 947.278 kb on - strandat 947.278 kb on - strandat 947.278 kb on - strandat 947.278 kb on - strandat 947.278 kb on - strandat 947.278 kb on - strandat 947.647 kb on + strandat 947.649 kb on + strandat 947.649 kb on + strandat 947.649 kb on + strandat 947.649 kb on + strandat 947.649 kb on + strandat 947.649 kb on + strandat 947.649 kb on + strandat 947.649 kb on + strandat 947.649 kb on + strandat 947.649 kb on + strandat 947.650 kb on - strandat 947.650 kb on - strandat 947.650 kb on - strandat 947.650 kb on - strandat 947.650 kb on - strandat 947.650 kb on - strandat 947.650 kb on - strandat 947.650 kb on - strandat 947.855 kb on + strand, within MPMX19_04568at 947.870 kb on + strand, within MPMX19_04568at 947.870 kb on + strand, within MPMX19_04568at 947.870 kb on + strand, within MPMX19_04568at 947.870 kb on + strand, within MPMX19_04568at 947.870 kb on + strand, within MPMX19_04568at 947.870 kb on + strand, within MPMX19_04568at 947.870 kb on + strand, within MPMX19_04568at 947.870 kb on + strand, within MPMX19_04568at 947.871 kb on - strand, within MPMX19_04568at 947.871 kb on - strand, within MPMX19_04568at 947.871 kb on - strand, within MPMX19_04568at 947.871 kb on - strand, within MPMX19_04568at 947.972 kb on + strand, within MPMX19_04568at 947.993 kb on + strand, within MPMX19_04568at 947.994 kb on - strand, within MPMX19_04568at 948.175 kb on + strandat 948.175 kb on + strandat 948.175 kb on + strandat 948.175 kb on + strandat 948.193 kb on + strandat 948.307 kb on + strand, within MPMX19_04569at 948.355 kb on + strand, within MPMX19_04569at 948.355 kb on + strand, within MPMX19_04569at 948.355 kb on + strand, within MPMX19_04569at 948.355 kb on + strand, within MPMX19_04569at 948.355 kb on + strand, within MPMX19_04569at 948.355 kb on + strand, within MPMX19_04569at 948.356 kb on - strand, within MPMX19_04569at 948.356 kb on - strand, within MPMX19_04569at 948.356 kb on - strand, within MPMX19_04569at 948.356 kb on - strand, within MPMX19_04569at 948.356 kb on - strand, within MPMX19_04569at 948.356 kb on - strand, within MPMX19_04569

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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946,574 + MPMX19_04566 0.20 +0.6
946,574 + MPMX19_04566 0.20 +0.6
946,712 + MPMX19_04566 0.38 -0.4
946,712 + MPMX19_04566 0.38 -0.9
946,712 + MPMX19_04566 0.38 +0.0
946,712 + MPMX19_04566 0.38 -0.5
946,712 + MPMX19_04566 0.38 -0.2
946,713 - MPMX19_04566 0.38 +1.0
946,713 - MPMX19_04566 0.38 +1.6
946,713 - MPMX19_04566 0.38 +0.4
946,747 + MPMX19_04566 0.42 -0.2
946,747 + MPMX19_04566 0.42 +0.3
946,747 + MPMX19_04566 0.42 -1.2
946,747 + MPMX19_04566 0.42 -1.6
946,748 - MPMX19_04566 0.42 +0.3
946,748 - MPMX19_04566 0.42 +0.9
946,748 - MPMX19_04566 0.42 -0.5
946,748 - MPMX19_04566 0.42 +0.0
946,961 + MPMX19_04566 0.70 -0.4
946,962 - MPMX19_04566 0.70 +0.7
946,962 - MPMX19_04566 0.70 +1.0
946,962 - MPMX19_04566 0.70 +0.1
946,994 + MPMX19_04566 0.74 +0.8
946,994 + MPMX19_04566 0.74 +0.6
946,995 - MPMX19_04566 0.74 +0.6
946,995 - MPMX19_04566 0.74 -0.5
946,995 - MPMX19_04566 0.74 +0.1
947,012 + MPMX19_04566 0.76 -0.3
947,012 + MPMX19_04566 0.76 -0.3
947,012 + MPMX19_04566 0.76 +0.0
947,012 + MPMX19_04566 0.76 -0.4
947,012 + MPMX19_04566 0.76 -0.7
947,012 + MPMX19_04566 0.76 +0.0
947,012 + MPMX19_04566 0.76 -0.9
947,012 + MPMX19_04566 0.76 +0.8
947,012 + MPMX19_04566 0.76 +0.6
947,012 + MPMX19_04566 0.76 +0.8
947,012 + MPMX19_04566 0.76 +0.6
947,012 + MPMX19_04566 0.76 +0.5
947,012 + MPMX19_04566 0.76 -1.4
947,012 + MPMX19_04566 0.76 +0.6
947,013 - MPMX19_04566 0.76 -1.0
947,013 - MPMX19_04566 0.76 +0.0
947,013 - MPMX19_04566 0.76 -1.4
947,013 - MPMX19_04566 0.76 -1.7
947,013 - MPMX19_04566 0.76 +0.3
947,013 - MPMX19_04566 0.76 -0.2
947,013 - MPMX19_04566 0.76 +0.6
947,013 - MPMX19_04566 0.76 +0.5
947,013 - MPMX19_04566 0.76 +1.2
947,013 - MPMX19_04566 0.76 -1.9
947,013 - MPMX19_04566 0.76 +0.2
947,058 - MPMX19_04566 0.82 -0.3
947,089 - MPMX19_04566 0.86 +0.3
947,090 + MPMX19_04566 0.86 +0.3
947,090 + MPMX19_04566 0.86 -1.2
947,090 + MPMX19_04566 0.86 +0.0
947,090 + MPMX19_04566 0.86 -0.5
947,090 + MPMX19_04566 0.86 -0.7
947,090 + MPMX19_04566 0.86 +0.9
947,090 + MPMX19_04566 0.86 +1.0
947,090 + MPMX19_04566 0.86 -0.4
947,090 + MPMX19_04566 0.86 -1.1
947,090 + MPMX19_04566 0.86 +1.4
947,090 + MPMX19_04566 0.86 -0.9
947,090 + MPMX19_04566 0.86 -0.4
947,090 + MPMX19_04566 0.86 -2.1
947,090 + MPMX19_04566 0.86 +0.2
947,090 + MPMX19_04566 0.86 -1.4
947,091 - MPMX19_04566 0.86 -0.2
947,091 - MPMX19_04566 0.86 -0.2
947,091 - MPMX19_04566 0.86 -0.0
947,091 - MPMX19_04566 0.86 -0.6
947,091 - MPMX19_04566 0.86 -0.2
947,091 - MPMX19_04566 0.86 -1.4
947,091 - MPMX19_04566 0.86 -0.1
947,091 - MPMX19_04566 0.86 -0.6
947,091 - MPMX19_04566 0.86 -0.4
947,091 - MPMX19_04566 0.86 +2.2
947,091 - MPMX19_04566 0.86 -0.7
947,091 - MPMX19_04566 0.86 -1.2
947,091 - MPMX19_04566 0.86 -0.8
947,091 - MPMX19_04566 0.86 -1.0
947,091 - MPMX19_04566 0.86 -1.1
947,091 - MPMX19_04566 0.86 +0.5
947,091 - MPMX19_04566 0.86 -0.1
947,091 - MPMX19_04566 0.86 -1.7
947,091 - MPMX19_04566 0.86 -2.3
947,091 - MPMX19_04566 0.86 +0.3
947,091 - MPMX19_04566 0.86 +0.3
947,091 - MPMX19_04566 0.86 -0.2
947,253 + +0.2
947,270 + -2.1
947,270 + -1.9
947,270 + +1.2
947,271 - +0.1
947,271 - -1.2
947,271 - +1.3
947,271 - +0.0
947,271 - -1.3
947,277 + -0.7
947,277 + -1.2
947,277 + +0.1
947,278 - +0.0
947,278 - +0.8
947,278 - -0.3
947,278 - +0.4
947,278 - -0.8
947,278 - -0.7
947,278 - -0.7
947,278 - +0.6
947,278 - +1.3
947,647 + +0.2
947,649 + -0.4
947,649 + -1.4
947,649 + +1.6
947,649 + +0.6
947,649 + +0.9
947,649 + +1.0
947,649 + -0.2
947,649 + +1.2
947,649 + -0.7
947,649 + -0.2
947,650 - -0.9
947,650 - +0.0
947,650 - +0.3
947,650 - -1.5
947,650 - +0.6
947,650 - +0.4
947,650 - +1.2
947,650 - -0.5
947,855 + MPMX19_04568 0.48 +1.0
947,870 + MPMX19_04568 0.51 +0.7
947,870 + MPMX19_04568 0.51 +0.5
947,870 + MPMX19_04568 0.51 +1.6
947,870 + MPMX19_04568 0.51 +1.0
947,870 + MPMX19_04568 0.51 -0.2
947,870 + MPMX19_04568 0.51 -1.2
947,870 + MPMX19_04568 0.51 -1.2
947,870 + MPMX19_04568 0.51 -1.2
947,871 - MPMX19_04568 0.52 -0.3
947,871 - MPMX19_04568 0.52 -1.5
947,871 - MPMX19_04568 0.52 -0.9
947,871 - MPMX19_04568 0.52 -0.7
947,972 + MPMX19_04568 0.77 -1.0
947,993 + MPMX19_04568 0.82 +1.0
947,994 - MPMX19_04568 0.82 -1.2
948,175 + -0.7
948,175 + -0.5
948,175 + -0.4
948,175 + +0.7
948,193 + -0.3
948,307 + MPMX19_04569 0.11 -0.7
948,355 + MPMX19_04569 0.18 +0.0
948,355 + MPMX19_04569 0.18 -0.2
948,355 + MPMX19_04569 0.18 +1.0
948,355 + MPMX19_04569 0.18 +1.3
948,355 + MPMX19_04569 0.18 +0.2
948,355 + MPMX19_04569 0.18 -0.6
948,356 - MPMX19_04569 0.18 -0.8
948,356 - MPMX19_04569 0.18 -0.7
948,356 - MPMX19_04569 0.18 +0.2
948,356 - MPMX19_04569 0.18 -1.5
948,356 - MPMX19_04569 0.18 -1.2
948,356 - MPMX19_04569 0.18 -0.2

Or see this region's nucleotide sequence