Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03468

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03467 and MPMX19_03468 are separated by 83 nucleotidesMPMX19_03468 and MPMX19_03469 overlap by 4 nucleotidesMPMX19_03469 and MPMX19_03470 overlap by 4 nucleotides MPMX19_03467: MPMX19_03467 - Methyl-accepting chemotaxis protein, at 876,760 to 878,451 _03467 MPMX19_03468: MPMX19_03468 - hypothetical protein, at 878,535 to 879,512 _03468 MPMX19_03469: MPMX19_03469 - hypothetical protein, at 879,509 to 880,183 _03469 MPMX19_03470: MPMX19_03470 - Phosphatidylinositol phosphate synthase, at 880,180 to 880,860 _03470 Position (kb) 878 879 880Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 878.463 kb on + strandat 878.548 kb on + strandat 878.549 kb on - strandat 878.549 kb on - strandat 878.875 kb on + strand, within MPMX19_03468at 878.875 kb on + strand, within MPMX19_03468at 878.875 kb on + strand, within MPMX19_03468at 878.875 kb on + strand, within MPMX19_03468at 878.875 kb on + strand, within MPMX19_03468at 878.876 kb on - strand, within MPMX19_03468at 878.876 kb on - strand, within MPMX19_03468at 878.876 kb on - strand, within MPMX19_03468at 878.876 kb on - strand, within MPMX19_03468at 878.876 kb on - strand, within MPMX19_03468at 878.876 kb on - strand, within MPMX19_03468at 878.876 kb on - strand, within MPMX19_03468at 878.876 kb on - strand, within MPMX19_03468at 878.876 kb on - strand, within MPMX19_03468at 878.876 kb on - strand, within MPMX19_03468at 878.876 kb on - strand, within MPMX19_03468at 878.914 kb on + strand, within MPMX19_03468at 878.914 kb on + strand, within MPMX19_03468at 878.914 kb on + strand, within MPMX19_03468at 878.914 kb on + strand, within MPMX19_03468at 878.914 kb on + strand, within MPMX19_03468at 878.914 kb on + strand, within MPMX19_03468at 878.914 kb on + strand, within MPMX19_03468at 878.915 kb on - strand, within MPMX19_03468at 878.915 kb on - strand, within MPMX19_03468at 878.915 kb on - strand, within MPMX19_03468at 878.915 kb on - strand, within MPMX19_03468at 878.915 kb on - strand, within MPMX19_03468at 878.915 kb on - strand, within MPMX19_03468at 878.915 kb on - strand, within MPMX19_03468at 878.915 kb on - strand, within MPMX19_03468at 878.915 kb on - strand, within MPMX19_03468at 878.945 kb on - strand, within MPMX19_03468at 878.945 kb on - strand, within MPMX19_03468at 878.945 kb on - strand, within MPMX19_03468at 878.992 kb on + strand, within MPMX19_03468at 878.993 kb on - strand, within MPMX19_03468at 879.094 kb on + strand, within MPMX19_03468at 879.094 kb on + strand, within MPMX19_03468at 879.094 kb on + strand, within MPMX19_03468at 879.094 kb on + strand, within MPMX19_03468at 879.094 kb on + strand, within MPMX19_03468at 879.094 kb on + strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.124 kb on + strand, within MPMX19_03468at 879.124 kb on + strand, within MPMX19_03468at 879.125 kb on - strand, within MPMX19_03468at 879.148 kb on + strand, within MPMX19_03468at 879.148 kb on + strand, within MPMX19_03468at 879.148 kb on + strand, within MPMX19_03468at 879.149 kb on - strand, within MPMX19_03468at 879.149 kb on - strand, within MPMX19_03468at 879.244 kb on + strand, within MPMX19_03468at 879.244 kb on + strand, within MPMX19_03468at 879.244 kb on + strand, within MPMX19_03468at 879.244 kb on + strand, within MPMX19_03468at 879.244 kb on + strand, within MPMX19_03468at 879.245 kb on - strand, within MPMX19_03468at 879.245 kb on - strand, within MPMX19_03468at 879.245 kb on - strand, within MPMX19_03468at 879.245 kb on - strand, within MPMX19_03468at 879.245 kb on - strand, within MPMX19_03468at 879.245 kb on - strand, within MPMX19_03468at 879.774 kb on + strand, within MPMX19_03469at 879.774 kb on + strand, within MPMX19_03469at 879.774 kb on + strand, within MPMX19_03469at 879.774 kb on + strand, within MPMX19_03469at 879.774 kb on + strand, within MPMX19_03469at 879.774 kb on + strand, within MPMX19_03469at 879.775 kb on - strand, within MPMX19_03469at 879.969 kb on + strand, within MPMX19_03469at 879.969 kb on + strand, within MPMX19_03469at 879.970 kb on - strand, within MPMX19_03469at 879.970 kb on - strand, within MPMX19_03469at 880.068 kb on + strand, within MPMX19_03469at 880.068 kb on + strand, within MPMX19_03469at 880.068 kb on + strand, within MPMX19_03469at 880.068 kb on + strand, within MPMX19_03469at 880.068 kb on + strand, within MPMX19_03469at 880.068 kb on + strand, within MPMX19_03469at 880.069 kb on - strand, within MPMX19_03469at 880.069 kb on - strand, within MPMX19_03469at 880.069 kb on - strand, within MPMX19_03469at 880.069 kb on - strand, within MPMX19_03469at 880.069 kb on - strand, within MPMX19_03469at 880.310 kb on + strand, within MPMX19_03470at 880.310 kb on + strand, within MPMX19_03470at 880.310 kb on + strand, within MPMX19_03470at 880.311 kb on - strand, within MPMX19_03470at 880.445 kb on + strand, within MPMX19_03470at 880.445 kb on + strand, within MPMX19_03470at 880.445 kb on + strand, within MPMX19_03470at 880.446 kb on - strand, within MPMX19_03470at 880.505 kb on + strand, within MPMX19_03470

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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878,463 + +0.2
878,548 + -0.9
878,549 - -1.7
878,549 - -2.2
878,875 + MPMX19_03468 0.35 +0.3
878,875 + MPMX19_03468 0.35 +0.2
878,875 + MPMX19_03468 0.35 +1.1
878,875 + MPMX19_03468 0.35 +0.4
878,875 + MPMX19_03468 0.35 -1.1
878,876 - MPMX19_03468 0.35 -1.2
878,876 - MPMX19_03468 0.35 -0.8
878,876 - MPMX19_03468 0.35 +1.2
878,876 - MPMX19_03468 0.35 -0.4
878,876 - MPMX19_03468 0.35 -1.1
878,876 - MPMX19_03468 0.35 +0.3
878,876 - MPMX19_03468 0.35 +0.5
878,876 - MPMX19_03468 0.35 -1.2
878,876 - MPMX19_03468 0.35 -0.6
878,876 - MPMX19_03468 0.35 +0.0
878,876 - MPMX19_03468 0.35 +0.0
878,914 + MPMX19_03468 0.39 -0.8
878,914 + MPMX19_03468 0.39 +0.0
878,914 + MPMX19_03468 0.39 -0.4
878,914 + MPMX19_03468 0.39 -0.3
878,914 + MPMX19_03468 0.39 -0.1
878,914 + MPMX19_03468 0.39 +0.2
878,914 + MPMX19_03468 0.39 +0.5
878,915 - MPMX19_03468 0.39 -1.0
878,915 - MPMX19_03468 0.39 +0.1
878,915 - MPMX19_03468 0.39 -1.7
878,915 - MPMX19_03468 0.39 -0.2
878,915 - MPMX19_03468 0.39 +0.0
878,915 - MPMX19_03468 0.39 -0.1
878,915 - MPMX19_03468 0.39 +0.2
878,915 - MPMX19_03468 0.39 -0.1
878,915 - MPMX19_03468 0.39 -1.1
878,945 - MPMX19_03468 0.42 +2.1
878,945 - MPMX19_03468 0.42 +0.5
878,945 - MPMX19_03468 0.42 -0.7
878,992 + MPMX19_03468 0.47 +0.3
878,993 - MPMX19_03468 0.47 -2.7
879,094 + MPMX19_03468 0.57 -1.1
879,094 + MPMX19_03468 0.57 +0.7
879,094 + MPMX19_03468 0.57 -0.5
879,094 + MPMX19_03468 0.57 -1.1
879,094 + MPMX19_03468 0.57 -0.8
879,094 + MPMX19_03468 0.57 -0.6
879,095 - MPMX19_03468 0.57 -1.2
879,095 - MPMX19_03468 0.57 -0.5
879,095 - MPMX19_03468 0.57 -1.1
879,095 - MPMX19_03468 0.57 -1.0
879,095 - MPMX19_03468 0.57 -1.9
879,095 - MPMX19_03468 0.57 +0.2
879,095 - MPMX19_03468 0.57 -1.7
879,095 - MPMX19_03468 0.57 -0.3
879,095 - MPMX19_03468 0.57 +0.5
879,095 - MPMX19_03468 0.57 -1.7
879,095 - MPMX19_03468 0.57 -0.5
879,095 - MPMX19_03468 0.57 -1.1
879,095 - MPMX19_03468 0.57 -0.2
879,124 + MPMX19_03468 0.60 +0.1
879,124 + MPMX19_03468 0.60 -0.1
879,125 - MPMX19_03468 0.60 -1.2
879,148 + MPMX19_03468 0.63 +0.7
879,148 + MPMX19_03468 0.63 -0.5
879,148 + MPMX19_03468 0.63 -0.7
879,149 - MPMX19_03468 0.63 +1.9
879,149 - MPMX19_03468 0.63 -0.7
879,244 + MPMX19_03468 0.72 +0.4
879,244 + MPMX19_03468 0.72 +0.2
879,244 + MPMX19_03468 0.72 -0.7
879,244 + MPMX19_03468 0.72 -0.9
879,244 + MPMX19_03468 0.72 -0.2
879,245 - MPMX19_03468 0.73 -1.9
879,245 - MPMX19_03468 0.73 -0.1
879,245 - MPMX19_03468 0.73 -0.4
879,245 - MPMX19_03468 0.73 -0.6
879,245 - MPMX19_03468 0.73 +0.6
879,245 - MPMX19_03468 0.73 -1.3
879,774 + MPMX19_03469 0.39 -0.1
879,774 + MPMX19_03469 0.39 +1.5
879,774 + MPMX19_03469 0.39 +0.5
879,774 + MPMX19_03469 0.39 -0.5
879,774 + MPMX19_03469 0.39 -0.1
879,774 + MPMX19_03469 0.39 +0.2
879,775 - MPMX19_03469 0.39 -0.9
879,969 + MPMX19_03469 0.68 +0.9
879,969 + MPMX19_03469 0.68 -1.1
879,970 - MPMX19_03469 0.68 -1.4
879,970 - MPMX19_03469 0.68 +0.6
880,068 + MPMX19_03469 0.83 -0.3
880,068 + MPMX19_03469 0.83 -0.7
880,068 + MPMX19_03469 0.83 +0.8
880,068 + MPMX19_03469 0.83 +1.0
880,068 + MPMX19_03469 0.83 -0.9
880,068 + MPMX19_03469 0.83 -1.7
880,069 - MPMX19_03469 0.83 -0.1
880,069 - MPMX19_03469 0.83 -0.8
880,069 - MPMX19_03469 0.83 +0.2
880,069 - MPMX19_03469 0.83 -0.1
880,069 - MPMX19_03469 0.83 -0.3
880,310 + MPMX19_03470 0.19 +0.7
880,310 + MPMX19_03470 0.19 -2.9
880,310 + MPMX19_03470 0.19 +1.7
880,311 - MPMX19_03470 0.19 -0.5
880,445 + MPMX19_03470 0.39 -0.1
880,445 + MPMX19_03470 0.39 +0.5
880,445 + MPMX19_03470 0.39 +0.5
880,446 - MPMX19_03470 0.39 -1.1
880,505 + MPMX19_03470 0.48 +0.9

Or see this region's nucleotide sequence