Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02944

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02942 and MPMX19_02943 are separated by 41 nucleotidesMPMX19_02943 and MPMX19_02944 are separated by 13 nucleotidesMPMX19_02944 and MPMX19_02945 are separated by 46 nucleotidesMPMX19_02945 and MPMX19_02946 overlap by 4 nucleotides MPMX19_02942: MPMX19_02942 - Transketolase 1, at 199,587 to 201,665 _02942 MPMX19_02943: MPMX19_02943 - Phosphoribulokinase, chromosomal, at 201,707 to 202,582 _02943 MPMX19_02944: MPMX19_02944 - Fructose-1,6-bisphosphatase class 1, at 202,596 to 203,708 _02944 MPMX19_02945: MPMX19_02945 - Protein CbbX, at 203,755 to 204,675 _02945 MPMX19_02946: MPMX19_02946 - Ribulose-phosphate 3-epimerase, at 204,672 to 205,394 _02946 Position (kb) 202 203 204Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 201.672 kb on + strandat 201.673 kb on - strandat 201.673 kb on - strandat 201.673 kb on - strandat 201.708 kb on + strandat 201.708 kb on + strandat 201.709 kb on - strandat 201.849 kb on + strand, within MPMX19_02943at 201.850 kb on - strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.003 kb on - strand, within MPMX19_02943at 202.003 kb on - strand, within MPMX19_02943at 202.003 kb on - strand, within MPMX19_02943at 202.011 kb on + strand, within MPMX19_02943at 202.011 kb on + strand, within MPMX19_02943at 202.011 kb on + strand, within MPMX19_02943at 202.011 kb on + strand, within MPMX19_02943at 202.194 kb on + strand, within MPMX19_02943at 202.194 kb on + strand, within MPMX19_02943at 202.195 kb on - strand, within MPMX19_02943at 202.195 kb on - strand, within MPMX19_02943at 202.195 kb on - strand, within MPMX19_02943at 202.323 kb on + strand, within MPMX19_02943at 202.323 kb on + strand, within MPMX19_02943at 202.324 kb on - strand, within MPMX19_02943at 202.324 kb on - strand, within MPMX19_02943at 202.684 kb on + strandat 202.685 kb on - strandat 202.697 kb on - strandat 202.697 kb on - strandat 202.849 kb on + strand, within MPMX19_02944at 202.850 kb on - strand, within MPMX19_02944at 202.850 kb on - strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.119 kb on + strand, within MPMX19_02944at 203.119 kb on + strand, within MPMX19_02944at 203.119 kb on + strand, within MPMX19_02944at 203.120 kb on - strand, within MPMX19_02944at 203.120 kb on - strand, within MPMX19_02944at 203.120 kb on - strand, within MPMX19_02944at 203.197 kb on + strand, within MPMX19_02944at 203.197 kb on + strand, within MPMX19_02944at 203.198 kb on - strand, within MPMX19_02944at 203.198 kb on - strand, within MPMX19_02944at 203.198 kb on - strand, within MPMX19_02944at 203.730 kb on + strandat 203.730 kb on + strandat 203.730 kb on + strandat 203.731 kb on - strandat 203.731 kb on - strandat 203.731 kb on - strandat 203.731 kb on - strandat 203.731 kb on - strandat 203.731 kb on - strandat 203.731 kb on - strandat 203.731 kb on - strandat 203.756 kb on + strandat 203.756 kb on + strandat 203.757 kb on - strandat 203.757 kb on - strandat 203.757 kb on - strandat 203.757 kb on - strandat 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 204.191 kb on + strand, within MPMX19_02945at 204.192 kb on - strand, within MPMX19_02945at 204.221 kb on + strand, within MPMX19_02945at 204.221 kb on + strand, within MPMX19_02945at 204.221 kb on + strand, within MPMX19_02945at 204.221 kb on + strand, within MPMX19_02945at 204.222 kb on - strand, within MPMX19_02945at 204.222 kb on - strand, within MPMX19_02945at 204.224 kb on + strand, within MPMX19_02945at 204.224 kb on + strand, within MPMX19_02945at 204.224 kb on + strand, within MPMX19_02945at 204.224 kb on + strand, within MPMX19_02945at 204.224 kb on + strand, within MPMX19_02945at 204.224 kb on + strand, within MPMX19_02945at 204.224 kb on + strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.300 kb on + strand, within MPMX19_02945at 204.302 kb on + strand, within MPMX19_02945at 204.302 kb on + strand, within MPMX19_02945at 204.302 kb on + strand, within MPMX19_02945at 204.302 kb on + strand, within MPMX19_02945at 204.302 kb on + strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.356 kb on + strand, within MPMX19_02945at 204.356 kb on + strand, within MPMX19_02945at 204.356 kb on + strand, within MPMX19_02945at 204.356 kb on + strand, within MPMX19_02945at 204.357 kb on - strand, within MPMX19_02945at 204.593 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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201,672 + +0.4
201,673 - -1.1
201,673 - -0.2
201,673 - -0.7
201,708 + -1.5
201,708 + -1.2
201,709 - -0.3
201,849 + MPMX19_02943 0.16 +0.4
201,850 - MPMX19_02943 0.16 +0.8
202,002 + MPMX19_02943 0.34 +0.1
202,002 + MPMX19_02943 0.34 -1.1
202,002 + MPMX19_02943 0.34 -1.5
202,002 + MPMX19_02943 0.34 +0.7
202,002 + MPMX19_02943 0.34 -0.6
202,002 + MPMX19_02943 0.34 -0.6
202,002 + MPMX19_02943 0.34 -1.1
202,002 + MPMX19_02943 0.34 -0.7
202,002 + MPMX19_02943 0.34 -0.3
202,003 - MPMX19_02943 0.34 -0.8
202,003 - MPMX19_02943 0.34 -1.3
202,003 - MPMX19_02943 0.34 +0.5
202,011 + MPMX19_02943 0.35 -0.3
202,011 + MPMX19_02943 0.35 +0.8
202,011 + MPMX19_02943 0.35 +0.9
202,011 + MPMX19_02943 0.35 +0.9
202,194 + MPMX19_02943 0.56 -0.6
202,194 + MPMX19_02943 0.56 +0.7
202,195 - MPMX19_02943 0.56 -0.8
202,195 - MPMX19_02943 0.56 +1.5
202,195 - MPMX19_02943 0.56 +1.3
202,323 + MPMX19_02943 0.70 -0.1
202,323 + MPMX19_02943 0.70 +0.5
202,324 - MPMX19_02943 0.70 -0.6
202,324 - MPMX19_02943 0.70 -0.9
202,684 + +1.9
202,685 - +0.9
202,697 - -1.5
202,697 - -0.7
202,849 + MPMX19_02944 0.23 +0.6
202,850 - MPMX19_02944 0.23 -0.3
202,850 - MPMX19_02944 0.23 -0.5
203,020 + MPMX19_02944 0.38 -0.9
203,020 + MPMX19_02944 0.38 -0.5
203,020 + MPMX19_02944 0.38 -0.2
203,020 + MPMX19_02944 0.38 -0.6
203,020 + MPMX19_02944 0.38 +1.1
203,020 + MPMX19_02944 0.38 -2.1
203,020 + MPMX19_02944 0.38 +0.5
203,020 + MPMX19_02944 0.38 -0.3
203,020 + MPMX19_02944 0.38 -0.0
203,020 + MPMX19_02944 0.38 +0.3
203,020 + MPMX19_02944 0.38 -0.4
203,020 + MPMX19_02944 0.38 -0.8
203,020 + MPMX19_02944 0.38 -0.5
203,020 + MPMX19_02944 0.38 -0.3
203,020 + MPMX19_02944 0.38 -0.5
203,020 + MPMX19_02944 0.38 +0.8
203,020 + MPMX19_02944 0.38 -1.3
203,020 + MPMX19_02944 0.38 -0.9
203,020 + MPMX19_02944 0.38 -1.5
203,020 + MPMX19_02944 0.38 +0.2
203,020 + MPMX19_02944 0.38 +0.1
203,020 + MPMX19_02944 0.38 -0.5
203,020 + MPMX19_02944 0.38 +0.3
203,021 - MPMX19_02944 0.38 -1.4
203,021 - MPMX19_02944 0.38 -0.8
203,021 - MPMX19_02944 0.38 -0.1
203,021 - MPMX19_02944 0.38 +0.4
203,021 - MPMX19_02944 0.38 -1.5
203,021 - MPMX19_02944 0.38 -1.4
203,021 - MPMX19_02944 0.38 -0.2
203,021 - MPMX19_02944 0.38 -1.3
203,021 - MPMX19_02944 0.38 -0.3
203,021 - MPMX19_02944 0.38 +0.4
203,021 - MPMX19_02944 0.38 -1.2
203,021 - MPMX19_02944 0.38 -0.9
203,021 - MPMX19_02944 0.38 -0.4
203,021 - MPMX19_02944 0.38 -0.7
203,021 - MPMX19_02944 0.38 -0.1
203,021 - MPMX19_02944 0.38 +0.8
203,021 - MPMX19_02944 0.38 -2.9
203,021 - MPMX19_02944 0.38 +1.1
203,119 + MPMX19_02944 0.47 -1.1
203,119 + MPMX19_02944 0.47 -0.7
203,119 + MPMX19_02944 0.47 +0.3
203,120 - MPMX19_02944 0.47 -0.8
203,120 - MPMX19_02944 0.47 -0.9
203,120 - MPMX19_02944 0.47 -0.2
203,197 + MPMX19_02944 0.54 -1.9
203,197 + MPMX19_02944 0.54 -1.4
203,198 - MPMX19_02944 0.54 -0.5
203,198 - MPMX19_02944 0.54 -1.3
203,198 - MPMX19_02944 0.54 +1.3
203,730 + +0.7
203,730 + +1.5
203,730 + -0.3
203,731 - -1.9
203,731 - -1.3
203,731 - -0.1
203,731 - +0.2
203,731 - -1.1
203,731 - +0.5
203,731 - +0.2
203,731 - -0.9
203,756 + +0.2
203,756 + -0.7
203,757 - -0.7
203,757 - +0.6
203,757 - +0.1
203,757 - -1.2
203,939 + MPMX19_02945 0.20 -0.8
203,939 + MPMX19_02945 0.20 -0.1
203,939 + MPMX19_02945 0.20 +0.6
203,939 + MPMX19_02945 0.20 +0.7
203,939 + MPMX19_02945 0.20 -1.5
203,939 + MPMX19_02945 0.20 -0.3
203,939 + MPMX19_02945 0.20 -1.9
203,939 + MPMX19_02945 0.20 -0.9
203,939 + MPMX19_02945 0.20 +0.7
203,939 + MPMX19_02945 0.20 -0.1
203,939 + MPMX19_02945 0.20 -0.9
203,940 - MPMX19_02945 0.20 +1.1
203,940 - MPMX19_02945 0.20 -0.6
203,940 - MPMX19_02945 0.20 -0.5
203,940 - MPMX19_02945 0.20 +0.5
203,940 - MPMX19_02945 0.20 +0.1
203,940 - MPMX19_02945 0.20 -1.1
203,940 - MPMX19_02945 0.20 -0.8
203,940 - MPMX19_02945 0.20 -1.1
203,940 - MPMX19_02945 0.20 -0.2
204,191 + MPMX19_02945 0.47 -0.8
204,192 - MPMX19_02945 0.47 -0.8
204,221 + MPMX19_02945 0.51 +0.5
204,221 + MPMX19_02945 0.51 -0.1
204,221 + MPMX19_02945 0.51 -0.9
204,221 + MPMX19_02945 0.51 +0.1
204,222 - MPMX19_02945 0.51 -0.3
204,222 - MPMX19_02945 0.51 -0.7
204,224 + MPMX19_02945 0.51 -0.3
204,224 + MPMX19_02945 0.51 +0.1
204,224 + MPMX19_02945 0.51 +0.5
204,224 + MPMX19_02945 0.51 +0.5
204,224 + MPMX19_02945 0.51 +0.4
204,224 + MPMX19_02945 0.51 -0.2
204,224 + MPMX19_02945 0.51 -0.6
204,225 - MPMX19_02945 0.51 -1.2
204,225 - MPMX19_02945 0.51 -0.0
204,225 - MPMX19_02945 0.51 -0.1
204,225 - MPMX19_02945 0.51 -0.5
204,225 - MPMX19_02945 0.51 -1.9
204,225 - MPMX19_02945 0.51 -0.3
204,225 - MPMX19_02945 0.51 -1.7
204,225 - MPMX19_02945 0.51 -1.1
204,225 - MPMX19_02945 0.51 -1.2
204,225 - MPMX19_02945 0.51 +0.7
204,225 - MPMX19_02945 0.51 +0.1
204,300 + MPMX19_02945 0.59 -2.9
204,302 + MPMX19_02945 0.59 -1.4
204,302 + MPMX19_02945 0.59 -2.7
204,302 + MPMX19_02945 0.59 -1.2
204,302 + MPMX19_02945 0.59 -0.5
204,302 + MPMX19_02945 0.59 -0.4
204,303 - MPMX19_02945 0.60 -0.2
204,303 - MPMX19_02945 0.60 +0.7
204,303 - MPMX19_02945 0.60 +0.2
204,303 - MPMX19_02945 0.60 -1.8
204,303 - MPMX19_02945 0.60 -0.6
204,303 - MPMX19_02945 0.60 +0.3
204,303 - MPMX19_02945 0.60 +0.8
204,303 - MPMX19_02945 0.60 +0.4
204,303 - MPMX19_02945 0.60 -0.7
204,356 + MPMX19_02945 0.65 -0.5
204,356 + MPMX19_02945 0.65 -0.4
204,356 + MPMX19_02945 0.65 -0.2
204,356 + MPMX19_02945 0.65 +0.2
204,357 - MPMX19_02945 0.65 -0.8
204,593 + -1.7

Or see this region's nucleotide sequence