Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02662 and MPMX19_02663 are separated by 121 nucleotides MPMX19_02663 and MPMX19_02664 are separated by 195 nucleotides MPMX19_02664 and MPMX19_02665 are separated by 52 nucleotides MPMX19_02665 and MPMX19_02666 overlap by 4 nucleotides
MPMX19_02662: MPMX19_02662 - tRNA-Leu, at 2,782,787 to 2,782,873
_02662
MPMX19_02663: MPMX19_02663 - Ribonuclease D, at 2,782,995 to 2,783,621
_02663
MPMX19_02664: MPMX19_02664 - Arabinose 5-phosphate isomerase KdsD, at 2,783,817 to 2,784,860
_02664
MPMX19_02665: MPMX19_02665 - Lipopolysaccharide export system protein LptC, at 2,784,913 to 2,785,680
_02665
MPMX19_02666: MPMX19_02666 - LPS-assembly protein LptD, at 2,785,677 to 2,786,573
_02666
Position (kb)
2783
2784
2785 Strain fitness (log2 ratio)
-1
0
1
2 at 2782.882 kb on + strand at 2782.953 kb on + strand at 2782.953 kb on + strand at 2782.953 kb on + strand at 2783.723 kb on + strand at 2783.723 kb on + strand at 2783.723 kb on + strand at 2783.723 kb on + strand at 2783.723 kb on + strand at 2783.723 kb on + strand at 2783.723 kb on + strand at 2784.512 kb on + strand, within MPMX19_02664 at 2784.512 kb on + strand, within MPMX19_02664 at 2784.512 kb on + strand, within MPMX19_02664 at 2784.512 kb on + strand, within MPMX19_02664 at 2784.512 kb on + strand, within MPMX19_02664 at 2784.512 kb on + strand, within MPMX19_02664 at 2784.512 kb on + strand, within MPMX19_02664 at 2784.512 kb on + strand, within MPMX19_02664
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 2,782,882 + -0.6 2,782,953 + -0.3 2,782,953 + -1.4 2,782,953 + -1.4 2,783,723 + -1.2 2,783,723 + +1.4 2,783,723 + -0.6 2,783,723 + -0.3 2,783,723 + -0.2 2,783,723 + +0.2 2,783,723 + +0.3 2,784,512 + MPMX19_02664 0.67 -0.6 2,784,512 + MPMX19_02664 0.67 +1.2 2,784,512 + MPMX19_02664 0.67 -1.0 2,784,512 + MPMX19_02664 0.67 +0.2 2,784,512 + MPMX19_02664 0.67 +1.8 2,784,512 + MPMX19_02664 0.67 -0.6 2,784,512 + MPMX19_02664 0.67 +0.4 2,784,512 + MPMX19_02664 0.67 -0.6
Or see this region's nucleotide sequence