Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00028 and MPMX19_00029 are separated by 62 nucleotides MPMX19_00029 and MPMX19_00030 are separated by 56 nucleotides MPMX19_00030 and MPMX19_00031 are separated by 115 nucleotides
MPMX19_00028: MPMX19_00028 - hypothetical protein, at 33,836 to 34,153
_00028
MPMX19_00029: MPMX19_00029 - Phosphoglycolate phosphatase, at 34,216 to 35,094
_00029
MPMX19_00030: MPMX19_00030 - D-inositol-3-phosphate glycosyltransferase, at 35,151 to 36,401
_00030
MPMX19_00031: MPMX19_00031 - hypothetical protein, at 36,517 to 37,311
_00031
Position (kb)
35
36
37 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 34.164 kb on + strand at 34.164 kb on + strand at 34.164 kb on + strand at 34.164 kb on + strand at 34.164 kb on + strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.166 kb on + strand at 34.167 kb on - strand at 34.194 kb on + strand at 34.194 kb on + strand at 34.194 kb on + strand at 34.195 kb on - strand at 34.195 kb on - strand at 34.195 kb on - strand at 34.195 kb on - strand at 34.195 kb on - strand at 34.195 kb on - strand at 34.195 kb on - strand at 36.517 kb on - strand at 36.517 kb on - strand at 36.517 kb on - strand at 36.517 kb on - strand at 36.517 kb on - strand at 36.517 kb on - strand at 36.517 kb on - strand at 36.517 kb on - strand at 36.517 kb on - strand at 36.517 kb on - strand at 36.556 kb on - strand at 36.556 kb on - strand at 36.581 kb on + strand at 36.581 kb on + strand at 36.581 kb on + strand at 36.581 kb on + strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.587 kb on - strand at 36.587 kb on - strand at 36.587 kb on - strand at 36.587 kb on - strand at 36.587 kb on - strand at 36.587 kb on - strand at 36.587 kb on - strand at 36.733 kb on + strand, within MPMX19_00031 at 36.733 kb on + strand, within MPMX19_00031 at 36.733 kb on + strand, within MPMX19_00031 at 36.733 kb on + strand, within MPMX19_00031 at 36.733 kb on + strand, within MPMX19_00031
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 34,164 + -0.9 34,164 + -0.1 34,164 + -0.5 34,164 + -0.6 34,164 + -0.1 34,165 - +1.3 34,165 - +0.7 34,165 - -0.8 34,165 - -0.5 34,165 - +2.4 34,165 - +0.2 34,165 - -0.2 34,165 - -0.4 34,165 - +0.3 34,166 + -0.2 34,167 - +0.6 34,194 + +0.2 34,194 + -1.1 34,194 + +0.8 34,195 - +0.7 34,195 - -0.3 34,195 - +0.7 34,195 - -0.5 34,195 - -1.3 34,195 - +0.5 34,195 - +1.0 36,517 - -0.0 36,517 - +0.3 36,517 - -0.3 36,517 - +0.1 36,517 - +0.1 36,517 - +0.2 36,517 - -0.3 36,517 - +1.3 36,517 - -0.2 36,517 - +0.1 36,556 - -0.8 36,556 - +0.5 36,581 + -1.7 36,581 + +0.1 36,581 + -0.7 36,581 + -0.7 36,582 - -0.2 36,582 - -0.9 36,582 - -0.1 36,582 - -0.6 36,582 - +0.5 36,582 - -0.1 36,582 - -0.5 36,582 - -0.7 36,582 - +1.3 36,582 - +0.3 36,582 - +0.2 36,582 - +0.3 36,582 - -0.3 36,582 - -0.2 36,587 - -1.0 36,587 - -0.1 36,587 - -1.0 36,587 - -0.7 36,587 - -0.9 36,587 - -0.3 36,587 - +0.3 36,733 + MPMX19_00031 0.27 -2.2 36,733 + MPMX19_00031 0.27 -0.5 36,733 + MPMX19_00031 0.27 -0.9 36,733 + MPMX19_00031 0.27 -0.2 36,733 + MPMX19_00031 0.27 -1.4
Or see this region's nucleotide sequence