Strain Fitness in Methylophilus sp. DMC18 around GFF979

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF977 and GFF978 are separated by 105 nucleotidesGFF978 and GFF979 are separated by 25 nucleotidesGFF979 and GFF980 are separated by 101 nucleotides GFF977 - Protein MgtC, at 208,571 to 209,293 GFF977 GFF978 - Phosphate import ATP-binding protein PstB, at 209,399 to 210,178 GFF978 GFF979 - hypothetical protein, at 210,204 to 211,142 GFF979 GFF980 - hypothetical protein, at 211,244 to 212,170 GFF980 Position (kb) 210 211 212Strain fitness (log2 ratio) -2 -1 0 1at 209.252 kb on + strandat 209.252 kb on + strandat 209.252 kb on + strandat 209.252 kb on + strandat 209.252 kb on + strandat 209.253 kb on - strandat 209.253 kb on - strandat 209.256 kb on + strandat 209.256 kb on + strandat 209.256 kb on + strandat 209.256 kb on + strandat 209.256 kb on + strandat 209.256 kb on + strandat 209.257 kb on - strandat 209.257 kb on - strandat 209.257 kb on - strandat 209.257 kb on - strandat 209.257 kb on - strandat 209.257 kb on - strandat 209.292 kb on - strandat 209.295 kb on + strandat 209.296 kb on - strandat 209.385 kb on + strandat 209.385 kb on + strandat 209.387 kb on + strandat 209.401 kb on - strandat 209.401 kb on - strandat 209.401 kb on - strandat 210.206 kb on - strandat 210.206 kb on - strandat 210.231 kb on - strandat 211.191 kb on - strandat 211.191 kb on - strandat 211.191 kb on - strandat 211.191 kb on - strandat 211.202 kb on - strandat 211.202 kb on - strandat 211.213 kb on - strandat 211.213 kb on - strandat 211.231 kb on + strandat 211.232 kb on - strandat 211.232 kb on - strandat 211.232 kb on - strandat 211.248 kb on + strandat 211.249 kb on - strandat 211.249 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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209,252 + -2.6
209,252 + +0.3
209,252 + -0.1
209,252 + -0.2
209,252 + -1.0
209,253 - -0.3
209,253 - -0.7
209,256 + +0.4
209,256 + -1.3
209,256 + +0.0
209,256 + -1.2
209,256 + -2.0
209,256 + +0.7
209,257 - -1.0
209,257 - +0.0
209,257 - -0.7
209,257 - -0.3
209,257 - +0.3
209,257 - -1.9
209,292 - -2.3
209,295 + -1.5
209,296 - -1.3
209,385 + -1.3
209,385 + +0.6
209,387 + +0.0
209,401 - -0.8
209,401 - -0.7
209,401 - -0.5
210,206 - +1.0
210,206 - -1.0
210,231 - -1.0
211,191 - -2.2
211,191 - -0.9
211,191 - -1.3
211,191 - -1.3
211,202 - -0.3
211,202 - -0.3
211,213 - -0.2
211,213 - -0.7
211,231 + -2.6
211,232 - +0.6
211,232 - +0.0
211,232 - -0.3
211,248 + -1.0
211,249 - +0.0
211,249 - -1.0

Or see this region's nucleotide sequence