Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF961 and GFF962 are separated by 4 nucleotides GFF962 and GFF963 overlap by 4 nucleotides GFF963 and GFF964 are separated by 427 nucleotides
GFF961 - Arsenical-resistance protein Acr3, at 194,861 to 195,901
GFF961
GFF962 - Cadmium-induced protein CadI, at 195,906 to 196,364
GFF962
GFF963 - Arsenical resistance operon repressor, at 196,361 to 196,699
GFF963
GFF964 - hypothetical protein, at 197,127 to 197,573
GFF964
Position (kb) 195
196
197 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 194.930 kb on + strand at 194.930 kb on + strand at 194.931 kb on - strand at 194.931 kb on - strand at 195.076 kb on + strand, within GFF961 at 195.109 kb on - strand, within GFF961 at 195.209 kb on + strand, within GFF961 at 195.209 kb on + strand, within GFF961 at 195.210 kb on - strand, within GFF961 at 195.290 kb on + strand, within GFF961 at 195.293 kb on + strand, within GFF961 at 195.293 kb on + strand, within GFF961 at 195.294 kb on - strand, within GFF961 at 195.294 kb on - strand, within GFF961 at 195.294 kb on - strand, within GFF961 at 195.294 kb on - strand, within GFF961 at 195.306 kb on - strand, within GFF961 at 195.364 kb on + strand, within GFF961 at 195.365 kb on - strand, within GFF961 at 195.365 kb on - strand, within GFF961 at 195.365 kb on - strand, within GFF961 at 195.474 kb on - strand, within GFF961 at 195.492 kb on - strand, within GFF961 at 195.492 kb on - strand, within GFF961 at 195.492 kb on - strand, within GFF961 at 195.521 kb on + strand, within GFF961 at 195.538 kb on + strand, within GFF961 at 195.538 kb on + strand, within GFF961 at 195.538 kb on + strand, within GFF961 at 195.539 kb on - strand, within GFF961 at 195.539 kb on - strand, within GFF961 at 195.540 kb on + strand, within GFF961 at 195.540 kb on + strand, within GFF961 at 195.540 kb on + strand, within GFF961 at 195.540 kb on + strand, within GFF961 at 195.541 kb on - strand, within GFF961 at 195.541 kb on - strand, within GFF961 at 195.541 kb on - strand, within GFF961 at 195.541 kb on - strand, within GFF961 at 195.541 kb on - strand, within GFF961 at 195.541 kb on - strand, within GFF961 at 195.637 kb on + strand, within GFF961 at 195.677 kb on + strand, within GFF961 at 195.678 kb on - strand, within GFF961 at 195.846 kb on - strand at 195.880 kb on + strand at 195.908 kb on - strand at 195.932 kb on + strand at 196.001 kb on + strand, within GFF962 at 196.001 kb on + strand, within GFF962 at 196.001 kb on + strand, within GFF962 at 196.001 kb on + strand, within GFF962 at 196.002 kb on - strand, within GFF962 at 196.002 kb on - strand, within GFF962 at 196.082 kb on - strand, within GFF962 at 196.107 kb on + strand, within GFF962 at 196.170 kb on + strand, within GFF962 at 196.176 kb on + strand, within GFF962 at 196.176 kb on + strand, within GFF962 at 196.176 kb on + strand, within GFF962 at 196.176 kb on + strand, within GFF962 at 196.177 kb on - strand, within GFF962 at 196.256 kb on + strand, within GFF962 at 196.257 kb on - strand, within GFF962 at 196.257 kb on - strand, within GFF962 at 196.261 kb on + strand, within GFF962 at 196.261 kb on + strand, within GFF962 at 196.262 kb on - strand, within GFF962 at 196.262 kb on - strand, within GFF962 at 196.262 kb on - strand, within GFF962 at 196.262 kb on - strand, within GFF962 at 196.296 kb on + strand, within GFF962 at 196.296 kb on + strand, within GFF962 at 196.355 kb on + strand at 196.355 kb on + strand at 196.355 kb on + strand at 196.356 kb on - strand at 196.356 kb on - strand at 196.356 kb on - strand at 196.356 kb on - strand at 196.386 kb on - strand at 196.443 kb on + strand, within GFF963 at 196.444 kb on - strand, within GFF963 at 196.444 kb on - strand, within GFF963 at 196.444 kb on - strand, within GFF963 at 196.444 kb on - strand, within GFF963 at 196.444 kb on - strand, within GFF963 at 196.470 kb on + strand, within GFF963 at 196.471 kb on - strand, within GFF963 at 196.471 kb on - strand, within GFF963 at 196.471 kb on - strand, within GFF963 at 196.471 kb on - strand, within GFF963 at 196.471 kb on - strand, within GFF963 at 196.471 kb on - strand, within GFF963 at 196.471 kb on - strand, within GFF963 at 196.471 kb on - strand, within GFF963 at 196.471 kb on - strand, within GFF963 at 196.471 kb on - strand, within GFF963 at 196.482 kb on + strand, within GFF963 at 196.485 kb on + strand, within GFF963 at 196.485 kb on + strand, within GFF963 at 196.485 kb on + strand, within GFF963 at 196.486 kb on - strand, within GFF963 at 196.486 kb on - strand, within GFF963 at 196.490 kb on - strand, within GFF963 at 196.490 kb on - strand, within GFF963 at 196.634 kb on - strand, within GFF963 at 196.634 kb on - strand, within GFF963 at 196.756 kb on + strand at 196.893 kb on + strand at 196.894 kb on - strand at 196.921 kb on - strand at 196.973 kb on + strand at 196.973 kb on + strand at 196.973 kb on + strand at 196.973 kb on + strand at 196.973 kb on + strand at 196.973 kb on + strand at 196.973 kb on + strand at 196.973 kb on + strand at 196.973 kb on + strand at 196.974 kb on - strand at 196.974 kb on - strand at 196.974 kb on - strand at 196.974 kb on - strand at 196.974 kb on - strand at 196.974 kb on - strand at 196.974 kb on - strand at 196.975 kb on + strand at 196.975 kb on + strand at 196.975 kb on + strand at 196.976 kb on - strand at 196.976 kb on - strand at 196.977 kb on + strand at 196.977 kb on + strand at 196.977 kb on + strand at 196.977 kb on + strand at 196.977 kb on + strand at 196.977 kb on + strand at 196.977 kb on + strand at 196.977 kb on + strand at 196.977 kb on + strand at 196.978 kb on - strand at 196.978 kb on - strand at 196.978 kb on - strand at 196.978 kb on - strand at 196.978 kb on - strand at 196.978 kb on - strand at 196.978 kb on - strand at 196.978 kb on - strand at 196.978 kb on - strand at 196.978 kb on - strand at 196.978 kb on - strand at 196.982 kb on + strand at 196.982 kb on + strand at 197.044 kb on + strand at 197.044 kb on + strand at 197.044 kb on + strand at 197.046 kb on + strand at 197.046 kb on + strand at 197.046 kb on + strand at 197.046 kb on + strand at 197.047 kb on - strand at 197.047 kb on - strand at 197.047 kb on - strand at 197.047 kb on - strand at 197.047 kb on - strand at 197.050 kb on + strand at 197.051 kb on - strand at 197.056 kb on + strand at 197.056 kb on + strand at 197.057 kb on - strand at 197.065 kb on - strand at 197.109 kb on + strand at 197.109 kb on + strand at 197.110 kb on - strand at 197.110 kb on - strand at 197.152 kb on - strand at 197.215 kb on + strand, within GFF964 at 197.216 kb on - strand, within GFF964 at 197.243 kb on + strand, within GFF964 at 197.282 kb on + strand, within GFF964
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 194,930 + +0.2 194,930 + +1.0 194,931 - -0.3 194,931 - -1.3 195,076 + GFF961 0.21 -0.3 195,109 - GFF961 0.24 -0.6 195,209 + GFF961 0.33 -1.2 195,209 + GFF961 0.33 +0.1 195,210 - GFF961 0.34 +1.3 195,290 + GFF961 0.41 -1.8 195,293 + GFF961 0.41 -1.0 195,293 + GFF961 0.41 -1.0 195,294 - GFF961 0.42 +1.3 195,294 - GFF961 0.42 -1.0 195,294 - GFF961 0.42 -0.6 195,294 - GFF961 0.42 -0.9 195,306 - GFF961 0.43 -1.3 195,364 + GFF961 0.48 -1.0 195,365 - GFF961 0.48 -0.0 195,365 - GFF961 0.48 -1.2 195,365 - GFF961 0.48 +0.3 195,474 - GFF961 0.59 -0.1 195,492 - GFF961 0.61 -0.2 195,492 - GFF961 0.61 -0.4 195,492 - GFF961 0.61 +0.5 195,521 + GFF961 0.63 +0.2 195,538 + GFF961 0.65 -0.0 195,538 + GFF961 0.65 -0.8 195,538 + GFF961 0.65 -0.9 195,539 - GFF961 0.65 +0.4 195,539 - GFF961 0.65 -0.2 195,540 + GFF961 0.65 -1.0 195,540 + GFF961 0.65 -0.0 195,540 + GFF961 0.65 -0.8 195,540 + GFF961 0.65 +0.6 195,541 - GFF961 0.65 -0.8 195,541 - GFF961 0.65 -2.2 195,541 - GFF961 0.65 -1.5 195,541 - GFF961 0.65 -2.3 195,541 - GFF961 0.65 -0.0 195,541 - GFF961 0.65 -1.0 195,637 + GFF961 0.75 -2.8 195,677 + GFF961 0.78 -1.3 195,678 - GFF961 0.78 -1.2 195,846 - +0.6 195,880 + -0.3 195,908 - -2.3 195,932 + -0.3 196,001 + GFF962 0.21 -0.6 196,001 + GFF962 0.21 +0.1 196,001 + GFF962 0.21 -2.0 196,001 + GFF962 0.21 -1.9 196,002 - GFF962 0.21 -0.3 196,002 - GFF962 0.21 -1.2 196,082 - GFF962 0.38 -0.2 196,107 + GFF962 0.44 -0.8 196,170 + GFF962 0.58 -1.3 196,176 + GFF962 0.59 -1.6 196,176 + GFF962 0.59 -2.7 196,176 + GFF962 0.59 -1.9 196,176 + GFF962 0.59 -1.3 196,177 - GFF962 0.59 +0.2 196,256 + GFF962 0.76 -1.6 196,257 - GFF962 0.76 -2.0 196,257 - GFF962 0.76 -2.1 196,261 + GFF962 0.77 -0.6 196,261 + GFF962 0.77 -0.2 196,262 - GFF962 0.78 -0.9 196,262 - GFF962 0.78 -0.4 196,262 - GFF962 0.78 -0.7 196,262 - GFF962 0.78 -1.5 196,296 + GFF962 0.85 -1.3 196,296 + GFF962 0.85 -1.6 196,355 + +0.6 196,355 + -1.0 196,355 + -2.3 196,356 - -0.5 196,356 - -0.1 196,356 - -1.8 196,356 - +0.3 196,386 - -0.3 196,443 + GFF963 0.24 -0.3 196,444 - GFF963 0.24 -2.3 196,444 - GFF963 0.24 -0.0 196,444 - GFF963 0.24 -0.7 196,444 - GFF963 0.24 -1.1 196,444 - GFF963 0.24 +0.3 196,470 + GFF963 0.32 -0.3 196,471 - GFF963 0.32 -1.0 196,471 - GFF963 0.32 -0.0 196,471 - GFF963 0.32 -0.6 196,471 - GFF963 0.32 -0.5 196,471 - GFF963 0.32 +0.6 196,471 - GFF963 0.32 -1.3 196,471 - GFF963 0.32 -0.9 196,471 - GFF963 0.32 -0.7 196,471 - GFF963 0.32 -0.8 196,471 - GFF963 0.32 -1.2 196,482 + GFF963 0.36 -0.2 196,485 + GFF963 0.37 -0.6 196,485 + GFF963 0.37 -0.8 196,485 + GFF963 0.37 -0.4 196,486 - GFF963 0.37 +0.2 196,486 - GFF963 0.37 -0.8 196,490 - GFF963 0.38 -0.0 196,490 - GFF963 0.38 -1.0 196,634 - GFF963 0.81 +0.0 196,634 - GFF963 0.81 -0.6 196,756 + +0.4 196,893 + +0.6 196,894 - -1.1 196,921 - -0.3 196,973 + -1.9 196,973 + -1.8 196,973 + +0.4 196,973 + -0.4 196,973 + -0.9 196,973 + -0.9 196,973 + -0.8 196,973 + -0.2 196,973 + -0.1 196,974 - -0.0 196,974 - -0.6 196,974 - -2.8 196,974 - -0.3 196,974 - -1.0 196,974 - -0.4 196,974 - -0.0 196,975 + -1.0 196,975 + -0.0 196,975 + -0.3 196,976 - -1.0 196,976 - -1.2 196,977 + +0.4 196,977 + +0.3 196,977 + +0.8 196,977 + +0.3 196,977 + -1.2 196,977 + -1.0 196,977 + -0.8 196,977 + -0.7 196,977 + -0.6 196,978 - -1.6 196,978 - -0.6 196,978 - +1.0 196,978 - -0.2 196,978 - -0.8 196,978 - -2.5 196,978 - -0.6 196,978 - -0.4 196,978 - -0.5 196,978 - +1.3 196,978 - +0.6 196,982 + -0.4 196,982 + +0.5 197,044 + -0.8 197,044 + -0.9 197,044 + +0.3 197,046 + +0.4 197,046 + -0.0 197,046 + -1.6 197,046 + -0.1 197,047 - -0.0 197,047 - -0.8 197,047 - +0.6 197,047 - -1.0 197,047 - -1.3 197,050 + -1.8 197,051 - -0.4 197,056 + -1.0 197,056 + -0.0 197,057 - -1.3 197,065 - -0.5 197,109 + -0.6 197,109 + -0.0 197,110 - -0.0 197,110 - -2.3 197,152 - -0.8 197,215 + GFF964 0.20 -0.7 197,216 - GFF964 0.20 -1.0 197,243 + GFF964 0.26 -0.7 197,282 + GFF964 0.35 -0.0
Or see this region's nucleotide sequence