Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF89 and GFF90 are separated by 12 nucleotides GFF90 and GFF91 are separated by 293 nucleotides GFF91 and GFF92 are separated by 146 nucleotides GFF92 and GFF93 are separated by 154 nucleotides
GFF89 - hypothetical protein, at 99,945 to 100,448
GFF89
GFF90 - hypothetical protein, at 100,461 to 100,877
GFF90
GFF91 - hypothetical protein, at 101,171 to 102,601
GFF91
GFF92 - hypothetical protein, at 102,748 to 103,263
GFF92
GFF93 - hypothetical protein, at 103,418 to 103,825
GFF93
Position (kb) 101
102
103 Strain fitness (log2 ratio) -2
-1
0
1 at 100.346 kb on - strand, within GFF89 at 100.380 kb on - strand, within GFF89 at 100.380 kb on - strand, within GFF89 at 100.408 kb on - strand at 100.408 kb on - strand at 100.440 kb on + strand at 100.441 kb on - strand at 100.448 kb on + strand at 100.448 kb on + strand at 100.459 kb on - strand at 100.463 kb on - strand at 100.524 kb on + strand, within GFF90 at 100.525 kb on - strand, within GFF90 at 100.583 kb on - strand, within GFF90 at 100.583 kb on - strand, within GFF90 at 100.583 kb on - strand, within GFF90 at 100.587 kb on - strand, within GFF90 at 100.587 kb on - strand, within GFF90 at 100.587 kb on - strand, within GFF90 at 100.689 kb on - strand, within GFF90 at 100.844 kb on + strand at 100.845 kb on - strand at 100.845 kb on - strand at 100.902 kb on - strand at 100.902 kb on - strand at 100.930 kb on + strand at 100.931 kb on - strand at 100.931 kb on - strand at 100.931 kb on - strand at 100.931 kb on - strand at 100.932 kb on + strand at 100.933 kb on - strand at 100.933 kb on - strand at 100.933 kb on - strand at 100.933 kb on - strand at 100.942 kb on - strand at 100.970 kb on + strand at 100.971 kb on - strand at 101.035 kb on + strand at 101.035 kb on + strand at 101.035 kb on + strand at 101.036 kb on - strand at 101.036 kb on - strand at 101.036 kb on - strand at 101.097 kb on + strand at 101.097 kb on + strand at 101.102 kb on + strand at 101.102 kb on + strand at 101.102 kb on + strand at 101.102 kb on + strand at 101.102 kb on + strand at 101.102 kb on + strand at 101.103 kb on - strand at 101.103 kb on - strand at 101.103 kb on - strand at 101.121 kb on + strand at 101.121 kb on + strand at 101.121 kb on + strand at 101.155 kb on + strand at 101.156 kb on - strand at 101.230 kb on + strand at 101.230 kb on + strand at 101.231 kb on - strand at 101.245 kb on + strand at 101.245 kb on + strand at 101.245 kb on + strand at 101.245 kb on + strand at 101.246 kb on - strand at 101.246 kb on - strand at 101.271 kb on + strand at 101.447 kb on + strand, within GFF91 at 101.506 kb on + strand, within GFF91 at 101.521 kb on + strand, within GFF91 at 101.522 kb on - strand, within GFF91 at 101.547 kb on + strand, within GFF91 at 101.547 kb on + strand, within GFF91 at 101.764 kb on + strand, within GFF91 at 101.764 kb on + strand, within GFF91 at 101.764 kb on + strand, within GFF91 at 101.764 kb on + strand, within GFF91 at 101.764 kb on + strand, within GFF91 at 101.764 kb on + strand, within GFF91 at 101.767 kb on + strand, within GFF91 at 101.795 kb on - strand, within GFF91 at 102.043 kb on + strand, within GFF91 at 102.139 kb on + strand, within GFF91 at 102.317 kb on + strand, within GFF91 at 102.318 kb on - strand, within GFF91 at 102.343 kb on + strand, within GFF91 at 102.356 kb on + strand, within GFF91 at 102.356 kb on + strand, within GFF91 at 102.357 kb on - strand, within GFF91 at 102.406 kb on + strand, within GFF91 at 102.406 kb on + strand, within GFF91 at 102.407 kb on - strand, within GFF91 at 102.407 kb on - strand, within GFF91 at 102.407 kb on - strand, within GFF91 at 102.446 kb on - strand, within GFF91 at 102.451 kb on + strand, within GFF91 at 102.464 kb on - strand at 102.466 kb on + strand at 102.505 kb on + strand at 102.532 kb on + strand at 102.567 kb on + strand at 102.567 kb on + strand at 102.568 kb on - strand at 102.599 kb on + strand at 102.599 kb on + strand at 102.599 kb on + strand at 102.599 kb on + strand at 102.600 kb on - strand at 102.600 kb on - strand at 102.600 kb on - strand at 102.600 kb on - strand at 102.600 kb on - strand at 102.600 kb on - strand at 102.600 kb on - strand at 102.612 kb on - strand at 102.630 kb on + strand at 102.630 kb on + strand at 102.631 kb on - strand at 102.699 kb on + strand at 102.699 kb on + strand at 102.700 kb on - strand at 102.715 kb on + strand at 102.716 kb on - strand at 102.716 kb on - strand at 102.716 kb on - strand at 102.731 kb on + strand at 102.731 kb on + strand at 102.731 kb on + strand at 102.735 kb on + strand at 102.735 kb on + strand at 102.765 kb on + strand at 102.765 kb on + strand at 102.765 kb on + strand at 102.765 kb on + strand at 102.766 kb on - strand at 102.854 kb on + strand, within GFF92 at 102.854 kb on + strand, within GFF92 at 102.854 kb on + strand, within GFF92 at 102.854 kb on + strand, within GFF92 at 102.855 kb on - strand, within GFF92 at 102.876 kb on + strand, within GFF92 at 102.923 kb on + strand, within GFF92 at 102.923 kb on + strand, within GFF92 at 102.994 kb on + strand, within GFF92 at 103.001 kb on - strand, within GFF92 at 103.014 kb on + strand, within GFF92 at 103.014 kb on + strand, within GFF92 at 103.014 kb on + strand, within GFF92 at 103.014 kb on + strand, within GFF92 at 103.015 kb on - strand, within GFF92 at 103.041 kb on + strand, within GFF92 at 103.042 kb on - strand, within GFF92 at 103.151 kb on + strand, within GFF92 at 103.152 kb on - strand, within GFF92 at 103.217 kb on + strand at 103.227 kb on + strand at 103.227 kb on + strand at 103.228 kb on - strand at 103.228 kb on - strand at 103.228 kb on - strand at 103.283 kb on + strand at 103.283 kb on + strand at 103.283 kb on + strand at 103.283 kb on + strand at 103.283 kb on + strand at 103.283 kb on + strand at 103.284 kb on - strand at 103.284 kb on - strand at 103.284 kb on - strand at 103.284 kb on - strand at 103.284 kb on - strand at 103.284 kb on - strand at 103.284 kb on - strand at 103.284 kb on - strand at 103.284 kb on - strand at 103.287 kb on + strand at 103.287 kb on + strand at 103.287 kb on + strand at 103.287 kb on + strand at 103.287 kb on + strand at 103.287 kb on + strand at 103.287 kb on + strand at 103.287 kb on + strand at 103.287 kb on + strand at 103.287 kb on + strand at 103.287 kb on + strand at 103.288 kb on - strand at 103.288 kb on - strand at 103.288 kb on - strand at 103.288 kb on - strand at 103.305 kb on + strand at 103.305 kb on + strand at 103.305 kb on + strand at 103.305 kb on + strand at 103.305 kb on + strand at 103.305 kb on + strand at 103.306 kb on - strand at 103.306 kb on - strand at 103.336 kb on + strand at 103.336 kb on + strand at 103.336 kb on + strand at 103.336 kb on + strand at 103.337 kb on - strand at 103.342 kb on + strand at 103.342 kb on + strand at 103.342 kb on + strand at 103.342 kb on + strand at 103.342 kb on + strand at 103.342 kb on + strand at 103.342 kb on + strand at 103.342 kb on + strand at 103.343 kb on - strand at 103.343 kb on - strand at 103.343 kb on - strand at 103.343 kb on - strand at 103.343 kb on - strand at 103.349 kb on + strand at 103.349 kb on + strand at 103.388 kb on + strand at 103.389 kb on - strand at 103.389 kb on - strand at 103.398 kb on + strand at 103.441 kb on + strand at 103.442 kb on - strand at 103.453 kb on - strand at 103.508 kb on + strand, within GFF93 at 103.509 kb on - strand, within GFF93 at 103.572 kb on + strand, within GFF93 at 103.572 kb on + strand, within GFF93 at 103.572 kb on + strand, within GFF93
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 100,346 - GFF89 0.80 +1.3 100,380 - GFF89 0.86 -1.0 100,380 - GFF89 0.86 +1.0 100,408 - -0.1 100,408 - -0.1 100,440 + -1.3 100,441 - -0.3 100,448 + +1.0 100,448 + +0.0 100,459 - -0.3 100,463 - +0.8 100,524 + GFF90 0.15 -1.3 100,525 - GFF90 0.15 +0.2 100,583 - GFF90 0.29 -0.6 100,583 - GFF90 0.29 -0.8 100,583 - GFF90 0.29 -1.0 100,587 - GFF90 0.30 -0.8 100,587 - GFF90 0.30 -1.6 100,587 - GFF90 0.30 -0.6 100,689 - GFF90 0.55 -2.0 100,844 + -2.3 100,845 - -2.1 100,845 - -0.3 100,902 - -0.8 100,902 - -0.3 100,930 + -1.3 100,931 - -0.9 100,931 - +0.0 100,931 - -1.2 100,931 - -1.0 100,932 + -1.1 100,933 - -1.6 100,933 - -1.0 100,933 - +0.0 100,933 - -2.1 100,942 - -0.3 100,970 + -1.2 100,971 - -1.0 101,035 + -1.6 101,035 + -1.0 101,035 + -1.8 101,036 - +0.6 101,036 - -0.2 101,036 - +0.4 101,097 + -1.0 101,097 + -0.2 101,102 + +0.6 101,102 + -0.6 101,102 + -1.6 101,102 + -0.1 101,102 + +0.2 101,102 + -0.1 101,103 - -1.3 101,103 - -0.4 101,103 - +0.0 101,121 + -1.0 101,121 + -0.1 101,121 + -0.3 101,155 + -0.7 101,156 - -1.6 101,230 + -1.1 101,230 + -0.1 101,231 - +0.8 101,245 + -1.6 101,245 + -1.0 101,245 + -0.3 101,245 + -1.3 101,246 - +0.0 101,246 - -0.7 101,271 + -0.6 101,447 + GFF91 0.19 +0.4 101,506 + GFF91 0.23 -0.6 101,521 + GFF91 0.24 -0.7 101,522 - GFF91 0.25 -0.2 101,547 + GFF91 0.26 -0.2 101,547 + GFF91 0.26 -1.0 101,764 + GFF91 0.41 -1.1 101,764 + GFF91 0.41 -1.9 101,764 + GFF91 0.41 -1.1 101,764 + GFF91 0.41 -1.0 101,764 + GFF91 0.41 -0.7 101,764 + GFF91 0.41 +0.0 101,767 + GFF91 0.42 -0.5 101,795 - GFF91 0.44 -0.6 102,043 + GFF91 0.61 -0.6 102,139 + GFF91 0.68 -0.4 102,317 + GFF91 0.80 +0.0 102,318 - GFF91 0.80 -0.6 102,343 + GFF91 0.82 -1.0 102,356 + GFF91 0.83 -1.8 102,356 + GFF91 0.83 +0.0 102,357 - GFF91 0.83 -0.3 102,406 + GFF91 0.86 -0.9 102,406 + GFF91 0.86 -0.3 102,407 - GFF91 0.86 -0.6 102,407 - GFF91 0.86 +0.0 102,407 - GFF91 0.86 -1.0 102,446 - GFF91 0.89 +0.0 102,451 + GFF91 0.89 +1.0 102,464 - -0.3 102,466 + -0.4 102,505 + +0.0 102,532 + -1.3 102,567 + +0.6 102,567 + -1.6 102,568 - +0.0 102,599 + -0.5 102,599 + -1.0 102,599 + -0.1 102,599 + -0.9 102,600 - -1.6 102,600 - -1.1 102,600 - +0.4 102,600 - +1.0 102,600 - -1.0 102,600 - -1.0 102,600 - -1.0 102,612 - +1.4 102,630 + +0.3 102,630 + -1.3 102,631 - -0.4 102,699 + -0.3 102,699 + +0.6 102,700 - +0.9 102,715 + +0.4 102,716 - +0.2 102,716 - +0.2 102,716 - -0.3 102,731 + +1.0 102,731 + +0.2 102,731 + -0.2 102,735 + +0.3 102,735 + +0.8 102,765 + -1.6 102,765 + +0.5 102,765 + -0.4 102,765 + -0.1 102,766 - -0.7 102,854 + GFF92 0.21 -1.3 102,854 + GFF92 0.21 +0.3 102,854 + GFF92 0.21 -0.3 102,854 + GFF92 0.21 +0.5 102,855 - GFF92 0.21 -1.4 102,876 + GFF92 0.25 +0.6 102,923 + GFF92 0.34 -0.2 102,923 + GFF92 0.34 +0.0 102,994 + GFF92 0.48 +0.3 103,001 - GFF92 0.49 -0.7 103,014 + GFF92 0.52 -1.8 103,014 + GFF92 0.52 +0.6 103,014 + GFF92 0.52 -0.5 103,014 + GFF92 0.52 -2.7 103,015 - GFF92 0.52 -2.0 103,041 + GFF92 0.57 +0.0 103,042 - GFF92 0.57 -2.0 103,151 + GFF92 0.78 +0.6 103,152 - GFF92 0.78 -0.2 103,217 + -0.1 103,227 + +1.5 103,227 + -1.3 103,228 - +0.7 103,228 - +0.4 103,228 - -1.6 103,283 + -1.0 103,283 + -1.1 103,283 + -1.7 103,283 + -0.6 103,283 + -1.8 103,283 + +0.0 103,284 - -0.8 103,284 - -1.3 103,284 - -0.9 103,284 - -1.4 103,284 - -1.1 103,284 - -0.2 103,284 - -1.0 103,284 - -1.6 103,284 - -0.6 103,287 + -0.8 103,287 + +1.2 103,287 + -0.1 103,287 + -1.3 103,287 + -0.2 103,287 + +0.0 103,287 + +0.0 103,287 + -1.0 103,287 + -1.4 103,287 + -0.6 103,287 + +0.4 103,288 - -0.8 103,288 - -1.0 103,288 - -1.3 103,288 - +0.3 103,305 + -0.3 103,305 + -1.0 103,305 + -1.2 103,305 + -0.2 103,305 + +0.0 103,305 + +0.0 103,306 - -0.9 103,306 - -0.1 103,336 + -1.1 103,336 + +0.0 103,336 + -0.6 103,336 + -0.3 103,337 - -0.3 103,342 + -1.5 103,342 + -0.1 103,342 + -0.7 103,342 + -1.0 103,342 + -1.0 103,342 + +1.2 103,342 + -0.8 103,342 + +0.0 103,343 - -0.3 103,343 - -0.4 103,343 - -1.3 103,343 - -1.4 103,343 - -0.4 103,349 + -0.4 103,349 + -0.0 103,388 + -2.0 103,389 - +0.0 103,389 - -2.0 103,398 + -0.7 103,441 + -0.4 103,442 - +0.0 103,453 - -0.2 103,508 + GFF93 0.22 +0.7 103,509 - GFF93 0.22 +0.0 103,572 + GFF93 0.38 -0.8 103,572 + GFF93 0.38 -0.8 103,572 + GFF93 0.38 -1.1
Or see this region's nucleotide sequence