Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF887 and GFF888 are separated by 219 nucleotides GFF888 and GFF889 overlap by 4 nucleotides
GFF887 - hypothetical protein, at 121,645 to 123,747
GFF887
GFF888 - hypothetical protein, at 123,967 to 124,962
GFF888
GFF889 - Single-stranded-DNA-specific exonuclease RecJ, at 124,959 to 126,641
GFF889
Position (kb) 123
124
125 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 122.997 kb on - strand, within GFF887 at 123.082 kb on - strand, within GFF887 at 123.082 kb on - strand, within GFF887 at 123.082 kb on - strand, within GFF887 at 123.082 kb on - strand, within GFF887 at 123.089 kb on - strand, within GFF887 at 123.118 kb on - strand, within GFF887 at 123.139 kb on - strand, within GFF887 at 123.192 kb on + strand, within GFF887 at 123.249 kb on - strand, within GFF887 at 123.249 kb on - strand, within GFF887 at 123.262 kb on - strand, within GFF887 at 123.276 kb on + strand, within GFF887 at 123.276 kb on + strand, within GFF887 at 123.276 kb on + strand, within GFF887 at 123.277 kb on - strand, within GFF887 at 123.277 kb on - strand, within GFF887 at 123.316 kb on + strand, within GFF887 at 123.316 kb on + strand, within GFF887 at 123.316 kb on + strand, within GFF887 at 123.316 kb on + strand, within GFF887 at 123.316 kb on + strand, within GFF887 at 123.316 kb on + strand, within GFF887 at 123.316 kb on + strand, within GFF887 at 123.316 kb on + strand, within GFF887 at 123.316 kb on + strand, within GFF887 at 123.316 kb on + strand, within GFF887 at 123.316 kb on + strand, within GFF887 at 123.316 kb on + strand, within GFF887 at 123.316 kb on + strand, within GFF887 at 123.316 kb on + strand, within GFF887 at 123.316 kb on + strand, within GFF887 at 123.316 kb on + strand, within GFF887 at 123.316 kb on + strand, within GFF887 at 123.316 kb on + strand, within GFF887 at 123.316 kb on + strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.317 kb on - strand, within GFF887 at 123.321 kb on - strand, within GFF887 at 123.321 kb on - strand, within GFF887 at 123.321 kb on - strand, within GFF887 at 123.445 kb on + strand, within GFF887 at 123.445 kb on + strand, within GFF887 at 123.445 kb on + strand, within GFF887 at 123.445 kb on + strand, within GFF887 at 123.445 kb on + strand, within GFF887 at 123.446 kb on - strand, within GFF887 at 123.446 kb on - strand, within GFF887 at 123.446 kb on - strand, within GFF887 at 123.446 kb on - strand, within GFF887 at 123.446 kb on - strand, within GFF887 at 123.446 kb on - strand, within GFF887 at 123.446 kb on - strand, within GFF887 at 123.446 kb on - strand, within GFF887 at 123.446 kb on - strand, within GFF887 at 123.466 kb on - strand, within GFF887 at 123.466 kb on - strand, within GFF887 at 123.494 kb on + strand, within GFF887 at 123.494 kb on + strand, within GFF887 at 123.495 kb on - strand, within GFF887 at 123.508 kb on - strand, within GFF887 at 123.537 kb on + strand at 123.537 kb on + strand at 123.537 kb on + strand at 123.538 kb on - strand at 123.538 kb on - strand at 123.538 kb on - strand at 123.538 kb on - strand at 123.538 kb on - strand at 123.538 kb on - strand at 123.539 kb on + strand at 123.540 kb on - strand at 123.553 kb on + strand at 123.553 kb on + strand at 123.553 kb on + strand at 123.554 kb on - strand at 123.554 kb on - strand at 123.554 kb on - strand at 123.554 kb on - strand at 123.700 kb on + strand at 123.701 kb on - strand at 123.701 kb on - strand at 123.701 kb on - strand at 123.701 kb on - strand at 123.701 kb on - strand at 123.709 kb on + strand at 123.709 kb on + strand at 123.710 kb on - strand at 123.721 kb on + strand at 123.721 kb on + strand at 123.721 kb on + strand at 123.721 kb on + strand at 123.721 kb on + strand at 123.722 kb on - strand at 123.722 kb on - strand at 123.722 kb on - strand at 123.722 kb on - strand at 123.722 kb on - strand at 123.722 kb on - strand at 123.722 kb on - strand at 123.722 kb on - strand at 123.722 kb on - strand at 123.722 kb on - strand at 123.722 kb on - strand at 123.722 kb on - strand at 123.722 kb on - strand at 123.723 kb on + strand at 123.724 kb on - strand at 123.724 kb on - strand at 123.724 kb on - strand at 123.763 kb on + strand at 123.763 kb on + strand at 123.764 kb on - strand at 123.764 kb on - strand at 123.764 kb on - strand at 123.767 kb on - strand at 123.767 kb on - strand at 123.770 kb on + strand at 123.771 kb on - strand at 123.771 kb on - strand at 123.771 kb on - strand at 123.785 kb on + strand at 123.785 kb on + strand at 123.785 kb on + strand at 123.785 kb on + strand at 123.785 kb on + strand at 123.786 kb on - strand at 123.786 kb on - strand at 123.786 kb on - strand at 123.843 kb on - strand at 123.844 kb on + strand at 123.844 kb on + strand at 123.844 kb on + strand at 123.844 kb on + strand at 123.845 kb on - strand at 123.845 kb on - strand at 123.851 kb on - strand at 123.877 kb on - strand at 123.877 kb on - strand at 123.890 kb on - strand at 123.895 kb on + strand at 123.895 kb on + strand at 123.896 kb on - strand at 123.949 kb on + strand at 123.949 kb on + strand at 123.949 kb on + strand at 123.949 kb on + strand at 123.949 kb on + strand at 123.949 kb on + strand at 123.950 kb on - strand at 123.950 kb on - strand at 123.950 kb on - strand at 123.950 kb on - strand at 123.950 kb on - strand at 123.955 kb on - strand at 123.983 kb on - strand at 124.066 kb on + strand at 124.067 kb on - strand, within GFF888 at 124.101 kb on - strand, within GFF888 at 124.109 kb on + strand, within GFF888 at 124.113 kb on + strand, within GFF888 at 124.242 kb on + strand, within GFF888 at 124.242 kb on + strand, within GFF888 at 124.242 kb on + strand, within GFF888 at 124.249 kb on - strand, within GFF888 at 124.249 kb on - strand, within GFF888 at 124.341 kb on + strand, within GFF888 at 124.341 kb on + strand, within GFF888 at 124.341 kb on + strand, within GFF888 at 124.342 kb on - strand, within GFF888 at 124.661 kb on + strand, within GFF888 at 124.710 kb on + strand, within GFF888 at 124.710 kb on + strand, within GFF888 at 124.831 kb on - strand, within GFF888 at 124.831 kb on - strand, within GFF888 at 124.836 kb on - strand, within GFF888 at 124.847 kb on - strand, within GFF888 at 124.892 kb on + strand at 124.901 kb on + strand at 124.902 kb on - strand at 124.902 kb on - strand at 124.902 kb on - strand at 124.926 kb on - strand at 125.380 kb on + strand, within GFF889 at 125.507 kb on + strand, within GFF889 at 125.541 kb on + strand, within GFF889 at 125.678 kb on + strand, within GFF889 at 125.799 kb on + strand, within GFF889 at 125.848 kb on + strand, within GFF889 at 125.848 kb on + strand, within GFF889 at 125.852 kb on + strand, within GFF889 at 125.852 kb on + strand, within GFF889 at 125.852 kb on + strand, within GFF889 at 125.853 kb on - strand, within GFF889 at 125.896 kb on - strand, within GFF889
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 122,997 - GFF887 0.64 -0.4 123,082 - GFF887 0.68 +0.4 123,082 - GFF887 0.68 -0.4 123,082 - GFF887 0.68 -0.8 123,082 - GFF887 0.68 +0.6 123,089 - GFF887 0.69 -0.0 123,118 - GFF887 0.70 -0.3 123,139 - GFF887 0.71 -2.2 123,192 + GFF887 0.74 -0.7 123,249 - GFF887 0.76 -0.3 123,249 - GFF887 0.76 -0.8 123,262 - GFF887 0.77 -0.7 123,276 + GFF887 0.78 -0.4 123,276 + GFF887 0.78 +0.1 123,276 + GFF887 0.78 -1.1 123,277 - GFF887 0.78 +0.1 123,277 - GFF887 0.78 -1.1 123,316 + GFF887 0.79 -0.0 123,316 + GFF887 0.79 -0.1 123,316 + GFF887 0.79 -1.0 123,316 + GFF887 0.79 +1.5 123,316 + GFF887 0.79 +0.9 123,316 + GFF887 0.79 -0.2 123,316 + GFF887 0.79 -1.5 123,316 + GFF887 0.79 -0.3 123,316 + GFF887 0.79 -1.0 123,316 + GFF887 0.79 +0.7 123,316 + GFF887 0.79 -0.5 123,316 + GFF887 0.79 +1.0 123,316 + GFF887 0.79 -1.6 123,316 + GFF887 0.79 +1.0 123,316 + GFF887 0.79 +0.6 123,316 + GFF887 0.79 -0.6 123,316 + GFF887 0.79 +0.3 123,316 + GFF887 0.79 -0.0 123,316 + GFF887 0.79 -0.4 123,317 - GFF887 0.80 -1.4 123,317 - GFF887 0.80 -1.3 123,317 - GFF887 0.80 -0.8 123,317 - GFF887 0.80 +0.3 123,317 - GFF887 0.80 -1.0 123,317 - GFF887 0.80 +0.1 123,317 - GFF887 0.80 -0.4 123,317 - GFF887 0.80 -0.9 123,317 - GFF887 0.80 -1.6 123,317 - GFF887 0.80 -2.9 123,317 - GFF887 0.80 -1.3 123,317 - GFF887 0.80 -0.9 123,317 - GFF887 0.80 -0.4 123,317 - GFF887 0.80 -1.1 123,317 - GFF887 0.80 -0.4 123,317 - GFF887 0.80 -0.0 123,317 - GFF887 0.80 -0.6 123,317 - GFF887 0.80 -0.9 123,317 - GFF887 0.80 -0.9 123,317 - GFF887 0.80 -1.0 123,317 - GFF887 0.80 +0.3 123,317 - GFF887 0.80 -0.2 123,317 - GFF887 0.80 +1.0 123,317 - GFF887 0.80 +0.7 123,321 - GFF887 0.80 +0.3 123,321 - GFF887 0.80 -1.1 123,321 - GFF887 0.80 -1.0 123,445 + GFF887 0.86 -0.6 123,445 + GFF887 0.86 -0.0 123,445 + GFF887 0.86 +0.3 123,445 + GFF887 0.86 -1.8 123,445 + GFF887 0.86 +0.1 123,446 - GFF887 0.86 -1.3 123,446 - GFF887 0.86 -0.5 123,446 - GFF887 0.86 -0.6 123,446 - GFF887 0.86 -1.6 123,446 - GFF887 0.86 -0.8 123,446 - GFF887 0.86 +0.2 123,446 - GFF887 0.86 +0.5 123,446 - GFF887 0.86 -1.2 123,446 - GFF887 0.86 -0.6 123,466 - GFF887 0.87 -1.1 123,466 - GFF887 0.87 +0.3 123,494 + GFF887 0.88 -1.0 123,494 + GFF887 0.88 -1.5 123,495 - GFF887 0.88 +0.3 123,508 - GFF887 0.89 -1.0 123,537 + -1.9 123,537 + -2.2 123,537 + -1.3 123,538 - -0.6 123,538 - -0.3 123,538 - -0.3 123,538 - -0.3 123,538 - +0.5 123,538 - +0.1 123,539 + -1.1 123,540 - -1.1 123,553 + -1.0 123,553 + -0.9 123,553 + -0.1 123,554 - +0.8 123,554 - -1.6 123,554 - +0.4 123,554 - -0.9 123,700 + +0.6 123,701 - +0.4 123,701 - -0.5 123,701 - -1.8 123,701 - +0.3 123,701 - -0.5 123,709 + -2.2 123,709 + +1.0 123,710 - -0.1 123,721 + -1.3 123,721 + -0.0 123,721 + +0.5 123,721 + +0.7 123,721 + +0.3 123,722 - -0.2 123,722 - -0.9 123,722 - -0.0 123,722 - -0.4 123,722 - -0.6 123,722 - +0.4 123,722 - -0.0 123,722 - -1.0 123,722 - -1.7 123,722 - -0.5 123,722 - -0.2 123,722 - -1.3 123,722 - +0.7 123,723 + -0.2 123,724 - -0.5 123,724 - +0.2 123,724 - +0.4 123,763 + +0.6 123,763 + -1.4 123,764 - -2.0 123,764 - -0.2 123,764 - +0.0 123,767 - -0.3 123,767 - -0.7 123,770 + -0.4 123,771 - -0.0 123,771 - -0.6 123,771 - -0.8 123,785 + -1.0 123,785 + -0.8 123,785 + -1.0 123,785 + -0.7 123,785 + +0.0 123,786 - -0.5 123,786 - -0.0 123,786 - -1.4 123,843 - -1.1 123,844 + -0.3 123,844 + -0.1 123,844 + -0.7 123,844 + -0.3 123,845 - +0.1 123,845 - -0.6 123,851 - -1.8 123,877 - -1.1 123,877 - -0.7 123,890 - -1.0 123,895 + -0.8 123,895 + +1.0 123,896 - +0.2 123,949 + -0.7 123,949 + -2.8 123,949 + -1.8 123,949 + -0.6 123,949 + -0.6 123,949 + -0.5 123,950 - -1.3 123,950 - -0.9 123,950 - -0.6 123,950 - +0.2 123,950 - +0.1 123,955 - -1.3 123,983 - -1.0 124,066 + +0.7 124,067 - GFF888 0.10 -1.0 124,101 - GFF888 0.13 -1.0 124,109 + GFF888 0.14 +0.6 124,113 + GFF888 0.15 +1.0 124,242 + GFF888 0.28 -0.9 124,242 + GFF888 0.28 -1.8 124,242 + GFF888 0.28 -1.3 124,249 - GFF888 0.28 -0.8 124,249 - GFF888 0.28 -1.0 124,341 + GFF888 0.38 -2.5 124,341 + GFF888 0.38 -1.4 124,341 + GFF888 0.38 -1.0 124,342 - GFF888 0.38 -0.7 124,661 + GFF888 0.70 -0.0 124,710 + GFF888 0.75 -0.7 124,710 + GFF888 0.75 -1.2 124,831 - GFF888 0.87 -1.9 124,831 - GFF888 0.87 +0.5 124,836 - GFF888 0.87 +0.3 124,847 - GFF888 0.88 -1.8 124,892 + -0.9 124,901 + +1.0 124,902 - -1.0 124,902 - -0.6 124,902 - -0.6 124,926 - -0.7 125,380 + GFF889 0.25 -0.0 125,507 + GFF889 0.33 -2.2 125,541 + GFF889 0.35 -0.0 125,678 + GFF889 0.43 +0.1 125,799 + GFF889 0.50 +1.6 125,848 + GFF889 0.53 +0.1 125,848 + GFF889 0.53 -1.3 125,852 + GFF889 0.53 -1.3 125,852 + GFF889 0.53 -1.6 125,852 + GFF889 0.53 -0.5 125,853 - GFF889 0.53 -1.0 125,896 - GFF889 0.56 -1.8
Or see this region's nucleotide sequence