Strain Fitness in Methylophilus sp. DMC18 around GFF858

Experiment: Methanol and casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Methanol and casaminos (C)
93,559	-		GFF857	0.11	-1.0
93,563	-		GFF857	0.11	-1.0
93,572	+		GFF857	0.13	+0.7
93,579	+		GFF857	0.14	-0.5
93,579	+		GFF857	0.14	-0.5
93,588	-		GFF857	0.15	+0.2
93,593	+		GFF857	0.16	-0.2
93,593	+		GFF857	0.16	-0.0
93,594	-		GFF857	0.16	-1.3
93,594	-		GFF857	0.16	-1.3
93,594	-		GFF857	0.16	-0.3
93,612	-		GFF857	0.19	+0.4
93,612	-		GFF857	0.19	-1.2
93,615	+		GFF857	0.20	-0.2
93,616	-		GFF857	0.20	+0.5
93,616	-		GFF857	0.20	+0.1
93,645	+		GFF857	0.25	+0.1
93,645	+		GFF857	0.25	-0.3
93,645	+		GFF857	0.25	-1.0
93,646	-		GFF857	0.25	-0.3
93,649	+		GFF857	0.26	-0.2
93,650	-		GFF857	0.26	-0.0
93,650	-		GFF857	0.26	-0.5
93,650	-		GFF857	0.26	-0.2
93,652	+		GFF857	0.26	-1.6
93,652	+		GFF857	0.26	-1.3
93,652	+		GFF857	0.26	-1.6
93,652	+		GFF857	0.26	+0.7
93,652	+		GFF857	0.26	-0.9
93,653	-		GFF857	0.26	-0.5
93,653	-		GFF857	0.26	+0.5
93,653	-		GFF857	0.26	-0.8
93,653	-		GFF857	0.26	+1.0
93,677	-		GFF857	0.30	-1.8
93,697	-		GFF857	0.33	-0.4
93,697	-		GFF857	0.33	-1.0
93,715	+		GFF857	0.36	-0.0
93,723	+		GFF857	0.38	-0.4
93,723	+		GFF857	0.38	+0.2
93,724	-		GFF857	0.38	-1.3
93,756	-		GFF857	0.43	-0.7
93,756	-		GFF857	0.43	-3.1
93,756	-		GFF857	0.43	-0.1
93,756	-		GFF857	0.43	-0.2
93,777	+		GFF857	0.47	-1.0
93,777	+		GFF857	0.47	+0.6
93,777	+		GFF857	0.47	+0.4
93,777	+		GFF857	0.47	-0.7
93,778	-		GFF857	0.47	-0.2
93,778	-		GFF857	0.47	-0.4
93,778	-		GFF857	0.47	+0.5
93,778	-		GFF857	0.47	-0.2
93,844	+		GFF857	0.58	-0.5
93,845	+		GFF857	0.58	-1.7
93,852	+		GFF857	0.59	-0.6
93,892	+		GFF857	0.66	-0.3
93,904	+		GFF857	0.68	-0.0
93,905	-		GFF857	0.68	+0.1
93,905	-		GFF857	0.68	+1.6
93,917	+		GFF857	0.70	-0.3
93,918	-		GFF857	0.70	-1.6
93,918	-		GFF857	0.70	-1.6
93,921	+		GFF857	0.71	+0.6
93,922	-		GFF857	0.71	-0.2
93,922	-		GFF857	0.71	+0.6
93,922	-		GFF857	0.71	-2.0
93,922	-		GFF857	0.71	+0.8
93,922	-		GFF857	0.71	-0.0
93,922	-		GFF857	0.71	-1.8
93,922	-		GFF857	0.71	-1.4
93,922	-		GFF857	0.71	-1.5
93,925	-		GFF857	0.71	+0.8
93,932	+		GFF857	0.72	-0.5
93,932	+		GFF857	0.72	-2.3
93,933	-		GFF857	0.73	+0.7
93,933	-		GFF857	0.73	+0.5
93,933	-		GFF857	0.73	-1.0
93,933	-		GFF857	0.73	-0.0
93,942	+		GFF857	0.74	-1.0
93,942	+		GFF857	0.74	-0.4
93,942	+		GFF857	0.74	-1.0
93,942	+		GFF857	0.74	+0.7
93,943	-		GFF857	0.74	+1.0
93,943	-		GFF857	0.74	+0.1
93,943	-		GFF857	0.74	-0.8
93,951	+		GFF857	0.76	-0.9
93,960	+		GFF857	0.77	-1.6
93,981	+		GFF857	0.81	+1.3
93,982	-		GFF857	0.81	-0.3
93,982	-		GFF857	0.81	-1.0
93,982	-		GFF857	0.81	-0.6
94,011	-		GFF857	0.86	-1.0
94,011	-		GFF857	0.86	-0.8
94,011	-		GFF857	0.86	+0.5
94,011	-		GFF857	0.86	-0.8
94,053	+				-0.5
94,053	+				-1.0
94,075	+				-0.3
94,075	+				-0.6
94,076	-				-0.6
94,076	-				-1.3
94,076	-				+0.3
94,076	-				+1.0
94,079	+				+1.4
94,079	+				+0.1
94,130	+				-1.0
94,130	+				-0.4
94,130	+				-0.6
94,130	+				-1.0
94,130	+				-1.0
94,130	+				-0.3
94,130	+				-1.0
94,131	-				-1.6
94,131	-				-0.3
94,131	-				+0.7
94,131	-				+0.3
94,131	-				-2.4
94,135	+				-1.5
94,136	-				-1.2
94,136	-				+0.7
94,136	-				+0.1
94,137	+				-1.3
94,137	+				-0.1
94,138	-				-0.0
94,138	-				+0.3
94,138	-				-1.1
94,138	-				-0.5
94,138	-				+0.4
94,153	+				-0.7
94,153	+				-1.8
94,154	-				-0.8
94,154	-				-0.5
94,154	-				-1.2
94,155	+				-2.2
94,156	-				-0.2
94,156	-				-1.2
94,156	-				-1.6
94,156	-				-0.2
94,156	-				-0.6
94,156	-				-1.0
94,190	+				-0.2
94,204	-				-1.0
94,204	-				-0.1
94,204	-				-0.9
94,211	-				+0.3
94,237	-				-0.4
94,237	-				-0.8
94,283	-				-0.0
94,283	-				-0.6
94,285	+				-1.0
94,306	+				-1.1
94,306	+				-0.2
94,306	+				+0.4
94,306	+				-1.8
94,307	-				+0.7
94,307	-				-0.3
94,307	-				+0.3
94,313	+				-1.6
94,314	-				-1.0
94,314	-				-0.4
94,325	+				-0.0
94,325	+				-1.3
94,325	+				-0.0
94,326	-				-0.0
94,326	-				-0.1
94,348	+				-0.0
94,348	+				+0.2
94,349	-				-1.6
94,503	-				-1.1
94,515	+				-1.2
94,540	+				-1.2
94,541	-				-0.8
94,541	-				-1.6
94,541	-				-0.7
94,541	-				-1.3
94,541	-				-1.1
94,541	-				-2.0
94,544	+				-1.2
94,544	+				-0.0
94,544	+				-1.0
94,544	+				-0.8
94,544	+				-0.8
94,545	-				-1.9
94,545	-				+0.3
94,545	-				-1.0
94,545	-				+0.7
94,545	-				-0.2
94,545	-				-0.3
94,545	-				-0.8
94,545	-				-1.3
94,545	-				+0.2
94,545	-				-1.4
94,545	-				-0.1
94,545	-				-1.0
94,545	-				-0.3
94,545	-				-1.0
94,548	+				-0.0
94,644	+		GFF858	0.10	-1.0
94,644	+		GFF858	0.10	-1.6
94,645	-		GFF858	0.10	-1.0
94,754	+		GFF858	0.22	+1.0
94,761	-		GFF858	0.22	-1.0
94,809	-		GFF858	0.27	-1.0
94,887	-		GFF858	0.35	-1.3
94,940	+		GFF858	0.41	-1.0
94,950	-		GFF858	0.42	-1.2
95,091	+		GFF858	0.57	-1.0
95,092	-		GFF858	0.57	-1.0
95,092	-		GFF858	0.57	-1.8
95,204	+		GFF858	0.68	-0.8
95,205	-		GFF858	0.69	-1.8
95,243	+		GFF858	0.72	-0.0
95,244	-		GFF858	0.73	-1.3
95,244	-		GFF858	0.73	-1.0
95,538	+				-0.3
95,538	+				-0.3
95,587	+				-1.3
95,588	-				+0.4
95,593	-				-1.0
95,593	-				+0.5
95,632	+		GFF859	0.14	+0.3
95,673	+		GFF859	0.19	-0.3
95,674	-		GFF859	0.19	-0.8
95,674	-		GFF859	0.19	-0.0
95,744	+		GFF859	0.27	-0.6
95,745	-		GFF859	0.27	+0.4
95,745	-		GFF859	0.27	-1.1
95,777	+		GFF859	0.31	+1.0
95,777	+		GFF859	0.31	-0.3
95,777	+		GFF859	0.31	-1.8
95,778	-		GFF859	0.31	-1.3
95,800	+		GFF859	0.34	-0.0
95,800	+		GFF859	0.34	-1.0
95,801	-		GFF859	0.34	-0.5
95,801	-		GFF859	0.34	-1.0
95,801	-		GFF859	0.34	-1.6
95,801	-		GFF859	0.34	-0.0
95,801	-		GFF859	0.34	+0.5
95,801	-		GFF859	0.34	+0.2
95,801	-		GFF859	0.34	-0.0
95,801	-		GFF859	0.34	-1.6
95,801	-		GFF859	0.34	-0.7
95,801	-		GFF859	0.34	-0.8
95,802	+		GFF859	0.34	-1.8
95,802	+		GFF859	0.34	-1.1
95,803	-		GFF859	0.34	+1.0
95,803	-		GFF859	0.34	-1.2
95,803	-		GFF859	0.34	+0.3
95,803	-		GFF859	0.34	-0.1
95,803	-		GFF859	0.34	+0.6
95,803	-		GFF859	0.34	-0.2
95,828	-		GFF859	0.37	-0.2
95,833	+		GFF859	0.38	-1.9
95,833	+		GFF859	0.38	-0.0
95,834	-		GFF859	0.38	-1.8
95,834	-		GFF859	0.38	+0.1
95,834	-		GFF859	0.38	-0.6
95,834	-		GFF859	0.38	+0.1
95,834	-		GFF859	0.38	-1.3
95,839	-		GFF859	0.38	-0.7
95,899	+		GFF859	0.45	-1.8
95,900	-		GFF859	0.45	+0.8
95,900	-		GFF859	0.45	+0.2
95,900	-		GFF859	0.45	-1.3
95,900	-		GFF859	0.45	-0.7
95,900	-		GFF859	0.45	-0.2
95,900	-		GFF859	0.45	+0.4
95,900	-		GFF859	0.45	-0.6
95,945	-		GFF859	0.51	-1.1
96,020	+		GFF859	0.59	+0.6
96,020	+		GFF859	0.59	-1.0
96,020	+		GFF859	0.59	-1.5
96,021	-		GFF859	0.60	-1.3
96,021	-		GFF859	0.60	-0.4
96,045	+		GFF859	0.62	-0.0
96,045	+		GFF859	0.62	-0.6
96,046	-		GFF859	0.62	-1.0
96,079	+		GFF859	0.66	-0.3
96,079	+		GFF859	0.66	-1.1
96,145	+		GFF859	0.74	-0.0
96,145	+		GFF859	0.74	-0.7
96,146	-		GFF859	0.74	-1.4
96,148	+		GFF859	0.74	+0.3
96,148	+		GFF859	0.74	-2.6
96,149	-		GFF859	0.74	+0.7
96,149	-		GFF859	0.74	+0.4
96,149	-		GFF859	0.74	-0.6
96,149	-		GFF859	0.74	-0.6
96,152	+		GFF859	0.75	-0.1
96,152	+		GFF859	0.75	+0.6
96,153	-		GFF859	0.75	-1.2
96,176	+		GFF859	0.78	-0.0
96,176	+		GFF859	0.78	-1.6
96,176	+		GFF859	0.78	-0.2
96,177	-		GFF859	0.78	-0.6
96,178	+		GFF859	0.78	-1.0
96,178	+		GFF859	0.78	-1.1
96,179	-		GFF859	0.78	-1.0
96,179	-		GFF859	0.78	-1.0
96,227	+		GFF859	0.84	-1.0
96,228	-		GFF859	0.84	+0.3
96,322	+				-1.1
96,322	+				-0.3
96,322	+				-0.7
96,322	+				-0.0
96,322	+				-0.4
96,323	-				-1.1
96,323	-				-1.2
96,344	+				-0.0
96,344	+				-0.2
96,345	-				+1.0
96,345	-				-2.2
96,345	-				+0.1
96,345	-				-0.7
96,397	+				-0.0
96,397	+				-1.9
96,397	+				-0.3
96,397	+				-0.4
96,398	-				-1.3
96,398	-				-0.1
96,398	-				+0.8
96,398	-				-0.3
96,402	+				-1.8
96,402	+				-1.8
96,402	+				-0.2
96,402	+				-1.0
96,402	+				-0.6
96,403	-				-0.1
96,403	-				-0.0
96,403	-				-1.0
96,445	-				-1.3
96,460	+				-0.4
96,460	+				-0.0
96,461	-				-0.1
96,467	+				-0.7
96,467	+				-0.2
96,468	-				-0.0
96,470	+				-1.4
96,470	+				-0.7
96,478	+				+0.3
96,479	-				-0.0
96,479	-				-0.8
96,481	+				-0.1
96,482	-				+0.7