Strain Fitness in Methylophilus sp. DMC18 around GFF82

Experiment: Methanol and casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Methanol and casaminos (C)
89,868	+				-0.7
89,869	-				-0.2
89,880	+				-1.0
89,880	+				+0.6
89,881	-				-0.8
89,895	+				-1.0
89,896	-				-1.0
89,926	+				-0.3
89,926	+				-1.6
89,926	+				-0.9
89,926	+				+0.0
89,926	+				-0.3
89,926	+				+0.0
89,926	+				-1.0
89,926	+				-1.1
89,927	-				-1.0
89,927	-				-2.0
89,931	-				-0.8
89,931	-				-0.4
89,938	+				+0.0
89,938	+				+0.6
89,938	+				-2.3
89,938	+				-0.4
89,939	-				+0.7
89,939	-				+1.2
89,939	-				-1.1
89,939	-				+0.0
89,946	+				-0.2
89,946	+				+0.6
89,947	-				-1.6
89,947	-				-0.4
89,947	-				-0.1
89,955	+				+1.0
89,990	-				+0.3
89,990	-				-2.1
89,990	-				-0.5
89,990	-				-0.6
90,009	+		GFF81	0.12	-0.4
90,009	+		GFF81	0.12	-0.1
90,009	+		GFF81	0.12	-1.1
90,010	-		GFF81	0.12	-2.1
90,017	+		GFF81	0.13	-0.1
90,017	+		GFF81	0.13	+0.3
90,018	-		GFF81	0.13	-1.0
90,018	-		GFF81	0.13	+0.4
90,018	-		GFF81	0.13	-0.4
90,018	-		GFF81	0.13	+0.3
90,018	-		GFF81	0.13	-0.4
90,018	-		GFF81	0.13	-0.7
90,018	-		GFF81	0.13	+1.3
90,018	-		GFF81	0.13	-0.5
90,018	-		GFF81	0.13	-1.8
90,018	-		GFF81	0.13	+0.6
90,128	-		GFF81	0.29	+0.2
90,195	-		GFF81	0.39	+0.2
90,195	-		GFF81	0.39	-2.4
90,197	+		GFF81	0.39	+0.0
90,197	+		GFF81	0.39	-0.5
90,197	+		GFF81	0.39	-0.6
90,198	-		GFF81	0.39	-0.7
90,300	+		GFF81	0.54	-0.5
90,301	-		GFF81	0.54	+0.0
90,301	-		GFF81	0.54	-0.9
90,311	+		GFF81	0.55	-0.1
90,312	-		GFF81	0.55	-0.3
90,320	+		GFF81	0.57	+0.1
90,321	-		GFF81	0.57	+0.0
90,330	+		GFF81	0.58	+1.2
90,331	-		GFF81	0.58	-1.0
90,432	-		GFF81	0.73	-1.4
90,447	-		GFF81	0.75	-0.9
90,447	-		GFF81	0.75	-0.2
90,447	-		GFF81	0.75	-0.3
90,610	+				-0.2
90,610	+				-0.7
90,611	-				-0.1
90,611	-				+0.0
90,611	-				+0.0
90,623	+				-0.3
90,623	+				+0.6
90,623	+				-0.8
90,623	+				-1.8
90,624	-				-1.6
90,624	-				+0.0
90,624	-				-0.7
90,624	-				+0.6
90,658	-				+0.4
90,668	-				+0.2
90,721	+				-1.7
90,721	+				-0.1
90,721	+				-2.1
90,721	+				-1.0
90,721	+				+1.0
90,721	+				-1.0
90,721	+				-1.3
90,721	+				-2.0
90,721	+				+0.0
90,721	+				+1.0
90,721	+				-1.0
90,721	+				-0.7
90,722	-				+0.0
90,722	-				-1.0
90,722	-				-0.9
90,722	-				-0.2
90,722	-				-0.5
90,722	-				-1.1
90,722	-				-0.6
90,722	-				-0.6
90,722	-				-0.6
90,722	-				-0.4
90,722	-				-0.2
90,722	-				-0.7
90,722	-				+0.1
90,725	+				-1.0
90,725	+				-0.2
90,725	+				+0.8
90,725	+				+0.8
90,733	-				+2.0
90,733	-				-1.6
90,766	+				-1.3
90,767	-				+0.3
90,767	-				+0.6
90,786	-				-1.0
90,799	-				+0.1
90,799	-				-0.9
90,799	-				-1.6
90,808	+				-0.6
90,831	+				-0.6
90,834	+				-1.4
90,869	+				+0.0
90,870	-				-0.9
90,870	-				-1.6
90,877	+				-0.6
90,918	+				+0.6
90,918	+				-0.2
91,050	-				-0.7
91,057	+				-0.7
91,057	+				+0.0
91,082	-				-0.8
91,110	+				-0.8
91,110	+				+0.4
91,126	-		GFF82	0.11	+0.0
91,266	+		GFF82	0.16	+0.1
91,306	+		GFF82	0.17	-0.7
91,307	-		GFF82	0.17	+0.0
91,313	+		GFF82	0.17	-0.6
91,313	+		GFF82	0.17	-0.6
91,314	-		GFF82	0.17	-1.4
91,314	-		GFF82	0.17	-0.9
91,314	-		GFF82	0.17	-1.0
91,397	+		GFF82	0.20	+0.2
91,398	-		GFF82	0.20	-0.7
91,409	-		GFF82	0.21	-1.6
91,432	+		GFF82	0.22	-1.3
91,432	+		GFF82	0.22	+0.0
91,432	+		GFF82	0.22	-1.4
91,432	+		GFF82	0.22	-0.3
91,433	-		GFF82	0.22	-1.0
91,433	-		GFF82	0.22	+1.3
91,551	+		GFF82	0.26	-0.3
91,552	-		GFF82	0.26	+0.0
91,564	+		GFF82	0.26	+0.9
91,564	+		GFF82	0.26	-1.4
91,565	-		GFF82	0.26	-0.6
91,565	-		GFF82	0.26	+0.1
91,565	-		GFF82	0.26	-2.3
91,683	+		GFF82	0.31	-2.0
91,683	+		GFF82	0.31	-0.2
91,683	+		GFF82	0.31	+0.0
91,683	+		GFF82	0.31	-0.3
91,683	+		GFF82	0.31	-0.9
91,684	-		GFF82	0.31	-1.7
91,684	-		GFF82	0.31	-0.6
91,684	-		GFF82	0.31	-2.1
91,684	-		GFF82	0.31	-0.7
91,684	-		GFF82	0.31	-1.0
91,684	-		GFF82	0.31	-2.3
91,741	-		GFF82	0.33	-2.8
91,742	+		GFF82	0.33	-1.0
91,743	-		GFF82	0.33	-0.4
91,743	-		GFF82	0.33	-0.7
91,747	+		GFF82	0.33	+0.6
91,747	+		GFF82	0.33	-0.3
91,748	+		GFF82	0.33	-0.6
91,748	-		GFF82	0.33	+0.3
91,748	-		GFF82	0.33	-0.3
91,748	-		GFF82	0.33	-0.1
91,750	-		GFF82	0.33	-0.4
91,783	+		GFF82	0.34	-1.2
91,783	+		GFF82	0.34	+0.7
91,787	+		GFF82	0.34	-0.3
91,907	-		GFF82	0.39	-0.6
91,968	+		GFF82	0.41	-0.6
92,017	+		GFF82	0.43	-2.3
92,017	+		GFF82	0.43	+0.7
92,018	-		GFF82	0.43	-0.6
92,020	-		GFF82	0.43	-0.6
92,124	+		GFF82	0.46	+0.4
92,124	+		GFF82	0.46	-1.4
92,124	+		GFF82	0.46	-0.4
92,125	-		GFF82	0.46	-0.8
92,125	-		GFF82	0.46	+0.4
92,125	-		GFF82	0.46	-0.3
92,168	-		GFF82	0.48	-0.6
92,168	-		GFF82	0.48	-0.3
92,190	+		GFF82	0.49	-1.8
92,190	+		GFF82	0.49	-0.3
92,191	-		GFF82	0.49	-1.8
92,191	-		GFF82	0.49	-0.8
92,248	-		GFF82	0.51	+1.0
92,248	-		GFF82	0.51	-1.0
92,316	+		GFF82	0.53	+0.5
92,316	+		GFF82	0.53	-1.0
92,316	+		GFF82	0.53	-2.3
92,316	+		GFF82	0.53	-1.0
92,316	+		GFF82	0.53	-0.7
92,316	+		GFF82	0.53	-1.0
92,317	-		GFF82	0.53	-0.6
92,317	-		GFF82	0.53	-0.1
92,317	-		GFF82	0.53	+0.8
92,317	-		GFF82	0.53	-0.6
92,374	+		GFF82	0.55	-0.3
92,397	+		GFF82	0.56	-0.4
92,397	+		GFF82	0.56	-0.3
92,397	+		GFF82	0.56	-0.7
92,397	+		GFF82	0.56	-2.0
92,404	+		GFF82	0.56	-0.3
92,404	+		GFF82	0.56	+0.0
92,405	-		GFF82	0.56	-1.1
92,405	-		GFF82	0.56	-0.1
92,437	+		GFF82	0.58	-0.3
92,437	+		GFF82	0.58	-0.3
92,437	+		GFF82	0.58	-0.5
92,437	+		GFF82	0.58	-0.8
92,437	+		GFF82	0.58	-2.0
92,438	-		GFF82	0.58	-2.1
92,438	-		GFF82	0.58	-1.3
92,438	-		GFF82	0.58	+0.1
92,438	-		GFF82	0.58	-1.0
92,438	-		GFF82	0.58	+0.3
92,563	+		GFF82	0.62	-0.5
92,642	+		GFF82	0.65	-2.1
92,643	-		GFF82	0.65	-1.3
92,643	-		GFF82	0.65	+0.3
92,643	-		GFF82	0.65	-0.6
92,743	+		GFF82	0.69	-0.4
92,743	+		GFF82	0.69	+1.2
92,743	+		GFF82	0.69	-2.0
92,744	-		GFF82	0.69	-2.3
92,744	-		GFF82	0.69	+0.3
92,784	+		GFF82	0.70	-0.3
92,809	+		GFF82	0.71	-1.6
92,809	+		GFF82	0.71	+0.0
92,810	-		GFF82	0.71	-0.9
92,952	-		GFF82	0.76	-2.0
92,952	-		GFF82	0.76	+0.6
92,952	-		GFF82	0.76	-1.5
93,018	+		GFF82	0.78	-2.9
93,018	+		GFF82	0.78	-0.6
93,028	-		GFF82	0.79	-0.9
93,028	-		GFF82	0.79	-0.2
93,028	-		GFF82	0.79	-0.3
93,028	-		GFF82	0.79	+0.1
93,055	+		GFF82	0.80	+0.7
93,084	+		GFF82	0.81	-0.6
93,084	+		GFF82	0.81	+0.7
93,084	+		GFF82	0.81	-1.7
93,085	-		GFF82	0.81	-0.6
93,085	-		GFF82	0.81	-1.7
93,085	-		GFF82	0.81	-0.3
93,100	+		GFF82	0.81	-1.6
93,105	-		GFF82	0.82	-0.8
93,105	-		GFF82	0.82	-1.1
93,105	-		GFF82	0.82	-1.1
93,105	-		GFF82	0.82	-0.9
93,117	+		GFF82	0.82	+0.3
93,265	+		GFF82	0.87	+0.0
93,269	+		GFF82	0.88	-2.0
93,269	+		GFF82	0.88	-1.6
93,269	+		GFF82	0.88	-0.9
93,269	+		GFF82	0.88	+0.0
93,269	+		GFF82	0.88	-2.0
93,269	+		GFF82	0.88	-1.0
93,269	+		GFF82	0.88	+0.2
93,269	+		GFF82	0.88	-0.3
93,270	-		GFF82	0.88	-1.3
93,270	-		GFF82	0.88	-0.9
93,270	-		GFF82	0.88	-1.3
93,270	-		GFF82	0.88	-0.4
93,270	-		GFF82	0.88	-1.0
93,270	-		GFF82	0.88	-0.6
93,270	-		GFF82	0.88	-0.9
93,270	-		GFF82	0.88	+0.0
93,270	-		GFF82	0.88	-1.0
93,270	-		GFF82	0.88	-0.2
93,293	+		GFF82	0.88	+0.0
93,293	+		GFF82	0.88	-0.4
93,371	-				+0.3
93,373	+				-0.9
93,419	-				+0.1
93,428	+				+1.0
93,429	-				-1.3
93,429	-				-1.0
93,429	-				-1.6
93,515	+				-0.3
93,516	-				-1.0
93,548	+				-0.7
93,549	-				-1.1
93,581	+				+0.8
93,581	+				-1.1
93,582	-				+0.0
93,606	+				+0.6
93,607	-				-0.6
93,607	-				-1.8
93,672	+				-2.1
93,673	-				-0.3
93,673	-				-1.3
93,682	+				+0.2
93,702	+				-0.4
93,703	-				-2.0
93,703	-				+0.4
93,738	+				-1.7
93,738	+				-1.1
93,738	+				-1.9
93,754	+				+0.1
93,754	+				-1.3
93,754	+				+0.0
93,755	-				-1.2
93,755	-				+0.3
93,766	-				-0.6
93,807	+				+0.6
93,807	+				-1.0
93,808	-				-2.7
93,815	+				-0.4
93,815	+				-1.0
93,897	+				+1.4
93,897	+				-1.1
93,897	+				-1.0
93,897	+				+0.2
93,921	+				-1.0
93,921	+				+0.3
93,921	+				-1.0
93,921	+				-1.0
93,921	+				+0.0
93,921	+				+0.0
93,921	+				-1.8
93,921	+				+0.6
93,922	-				-1.8
93,922	-				-2.6
93,922	-				+1.2
93,923	+				-1.0
93,923	+				+0.6
93,923	+				-1.0
93,923	+				-1.0
93,924	-				-0.5
93,924	-				-2.2
93,924	-				-0.6
93,924	-				-0.3
93,924	-				+0.3
93,924	-				-0.6
93,924	-				+0.3
93,924	-				+0.2
93,924	-				+0.6
93,963	+				-0.1
94,038	-				-0.3
94,038	-				-1.8
94,038	-				-1.4
94,049	+				-0.6
94,049	+				-1.1
94,049	+				+0.0
94,049	+				+0.0
94,049	+				-0.5
94,049	+				+0.8
94,050	-				-0.9
94,050	-				-1.8
94,050	-				-0.2
94,071	+				-0.6
94,071	+				-1.2
94,071	+				-1.0
94,071	+				-0.1
94,071	+				-1.0
94,071	+				-0.6
94,072	-				-0.6
94,206	+		GFF83	0.13	-1.0
94,206	+		GFF83	0.13	+0.8
94,207	-		GFF83	0.13	-2.3
94,230	-		GFF83	0.15	+1.0
94,230	-		GFF83	0.15	-1.0
94,230	-		GFF83	0.15	+0.2
94,236	-		GFF83	0.15	-0.3
94,253	+		GFF83	0.16	+0.0
94,270	+		GFF83	0.16	+0.0
94,270	+		GFF83	0.16	-2.3
94,270	+		GFF83	0.16	-0.8
94,271	-		GFF83	0.16	+0.0
94,287	+		GFF83	0.17	-0.3
94,287	+		GFF83	0.17	-1.3
94,287	+		GFF83	0.17	-1.0
94,287	+		GFF83	0.17	+0.6
94,287	+		GFF83	0.17	-1.8
94,287	+		GFF83	0.17	-1.3
94,288	-		GFF83	0.17	+1.0
94,289	+		GFF83	0.17	+0.5
94,289	+		GFF83	0.17	+0.7
94,289	+		GFF83	0.17	-0.3
94,290	-		GFF83	0.17	-0.6
94,339	-		GFF83	0.20	-1.3
94,353	-		GFF83	0.20	-0.3
94,362	+		GFF83	0.21	-1.4
94,362	+		GFF83	0.21	+0.3
94,362	+		GFF83	0.21	+0.8
94,362	+		GFF83	0.21	+0.6
94,363	-		GFF83	0.21	-2.0
94,363	-		GFF83	0.21	-0.6
94,391	+		GFF83	0.22	-0.6
94,392	-		GFF83	0.22	-0.3
94,392	-		GFF83	0.22	-0.1
94,422	+		GFF83	0.23	-0.3
94,423	-		GFF83	0.23	+0.0
94,439	+		GFF83	0.24	-0.9
94,439	+		GFF83	0.24	-1.1
94,439	+		GFF83	0.24	-0.2
94,440	-		GFF83	0.24	-2.3
94,440	-		GFF83	0.24	-1.1
94,455	-		GFF83	0.25	+0.0
94,513	+		GFF83	0.27	-1.0
94,513	+		GFF83	0.27	-0.8
94,513	+		GFF83	0.27	-1.8
94,513	+		GFF83	0.27	-1.6
94,514	-		GFF83	0.28	+0.0
94,529	+		GFF83	0.28	-0.6
94,529	+		GFF83	0.28	+0.0