Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF736 and GFF737 are separated by 51 nucleotides GFF737 and GFF738 are separated by 110 nucleotides GFF738 and GFF739 are separated by 210 nucleotides GFF739 and GFF740 are separated by 113 nucleotides
GFF736 - Lipopolysaccharide assembly protein B, at 815,769 to 817,001
GFF736
GFF737 - Orotidine 5'-phosphate decarboxylase, at 817,053 to 817,748
GFF737
GFF738 - hypothetical protein, at 817,859 to 818,170
GFF738
GFF739 - hypothetical protein, at 818,381 to 818,866
GFF739
GFF740 - hypothetical protein, at 818,980 to 819,348
GFF740
Position (kb) 817
818
819 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 817.801 kb on + strand at 817.801 kb on + strand at 817.802 kb on - strand at 817.802 kb on - strand at 817.807 kb on + strand at 817.808 kb on - strand at 817.840 kb on + strand at 817.841 kb on - strand at 817.841 kb on - strand at 817.858 kb on + strand at 817.858 kb on + strand at 817.858 kb on + strand at 817.859 kb on - strand at 817.859 kb on - strand at 817.859 kb on - strand at 817.859 kb on - strand at 817.889 kb on + strand at 817.890 kb on - strand at 817.900 kb on - strand, within GFF738 at 817.927 kb on + strand, within GFF738 at 817.928 kb on - strand, within GFF738 at 818.062 kb on - strand, within GFF738 at 818.134 kb on + strand, within GFF738 at 818.138 kb on - strand, within GFF738 at 818.169 kb on - strand at 818.176 kb on + strand at 818.177 kb on - strand at 818.181 kb on + strand at 818.182 kb on - strand at 818.234 kb on + strand at 818.250 kb on + strand at 818.251 kb on - strand at 818.254 kb on + strand at 818.255 kb on - strand at 818.255 kb on - strand at 818.255 kb on - strand at 818.280 kb on + strand at 818.280 kb on + strand at 818.281 kb on - strand at 818.283 kb on - strand at 818.285 kb on - strand at 818.285 kb on - strand at 818.285 kb on - strand at 818.293 kb on - strand at 818.304 kb on - strand at 818.399 kb on - strand at 818.399 kb on - strand at 818.401 kb on + strand at 818.401 kb on + strand at 818.401 kb on + strand at 818.401 kb on + strand at 818.402 kb on - strand at 818.407 kb on + strand at 818.408 kb on - strand at 818.446 kb on + strand, within GFF739 at 818.446 kb on + strand, within GFF739 at 818.496 kb on + strand, within GFF739 at 818.496 kb on + strand, within GFF739 at 818.496 kb on + strand, within GFF739 at 818.496 kb on + strand, within GFF739 at 818.496 kb on + strand, within GFF739 at 818.497 kb on - strand, within GFF739 at 818.497 kb on - strand, within GFF739 at 818.497 kb on - strand, within GFF739 at 818.497 kb on - strand, within GFF739 at 818.500 kb on + strand, within GFF739 at 818.500 kb on + strand, within GFF739 at 818.501 kb on - strand, within GFF739 at 818.536 kb on + strand, within GFF739 at 818.544 kb on - strand, within GFF739 at 818.575 kb on + strand, within GFF739 at 818.576 kb on - strand, within GFF739 at 818.576 kb on - strand, within GFF739 at 818.605 kb on - strand, within GFF739 at 818.618 kb on - strand, within GFF739 at 818.630 kb on - strand, within GFF739 at 818.630 kb on - strand, within GFF739 at 818.640 kb on - strand, within GFF739 at 818.643 kb on + strand, within GFF739 at 818.643 kb on + strand, within GFF739 at 818.643 kb on + strand, within GFF739 at 818.643 kb on + strand, within GFF739 at 818.644 kb on - strand, within GFF739 at 818.644 kb on - strand, within GFF739 at 818.665 kb on + strand, within GFF739 at 818.666 kb on - strand, within GFF739 at 818.666 kb on - strand, within GFF739 at 818.684 kb on - strand, within GFF739 at 818.691 kb on + strand, within GFF739 at 818.691 kb on + strand, within GFF739 at 818.692 kb on - strand, within GFF739 at 818.695 kb on + strand, within GFF739 at 818.713 kb on + strand, within GFF739 at 818.714 kb on - strand, within GFF739 at 818.735 kb on - strand, within GFF739 at 818.735 kb on - strand, within GFF739 at 818.771 kb on - strand, within GFF739 at 818.773 kb on + strand, within GFF739 at 818.774 kb on - strand, within GFF739 at 818.774 kb on - strand, within GFF739 at 818.805 kb on + strand, within GFF739 at 818.805 kb on + strand, within GFF739 at 818.824 kb on + strand at 818.825 kb on - strand at 818.845 kb on + strand at 818.845 kb on + strand at 818.845 kb on + strand at 818.845 kb on + strand at 818.845 kb on + strand at 818.846 kb on - strand at 818.846 kb on - strand at 818.874 kb on + strand at 818.875 kb on - strand at 818.900 kb on - strand at 818.920 kb on + strand at 818.920 kb on + strand at 818.920 kb on + strand at 818.921 kb on - strand at 818.921 kb on - strand at 818.923 kb on + strand at 818.924 kb on - strand at 818.924 kb on - strand at 818.924 kb on - strand at 818.924 kb on - strand at 818.948 kb on - strand at 818.971 kb on + strand at 818.971 kb on + strand at 818.971 kb on + strand at 818.972 kb on - strand at 818.972 kb on - strand at 818.972 kb on - strand at 818.975 kb on + strand at 818.975 kb on + strand at 818.975 kb on + strand at 818.975 kb on + strand at 818.975 kb on + strand at 818.975 kb on + strand at 818.976 kb on - strand at 818.976 kb on - strand at 818.976 kb on - strand at 818.976 kb on - strand at 818.976 kb on - strand at 818.976 kb on - strand at 819.000 kb on - strand at 819.003 kb on + strand at 819.004 kb on - strand at 819.010 kb on + strand at 819.011 kb on - strand at 819.011 kb on - strand at 819.027 kb on - strand, within GFF740 at 819.027 kb on - strand, within GFF740 at 819.027 kb on - strand, within GFF740 at 819.027 kb on - strand, within GFF740 at 819.045 kb on + strand, within GFF740 at 819.045 kb on + strand, within GFF740 at 819.045 kb on + strand, within GFF740 at 819.045 kb on + strand, within GFF740 at 819.045 kb on + strand, within GFF740 at 819.046 kb on - strand, within GFF740 at 819.048 kb on + strand, within GFF740 at 819.058 kb on - strand, within GFF740 at 819.080 kb on + strand, within GFF740 at 819.102 kb on + strand, within GFF740 at 819.102 kb on + strand, within GFF740 at 819.134 kb on + strand, within GFF740 at 819.134 kb on - strand, within GFF740 at 819.163 kb on + strand, within GFF740 at 819.163 kb on + strand, within GFF740 at 819.163 kb on + strand, within GFF740 at 819.164 kb on - strand, within GFF740
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 817,801 + -0.8 817,801 + -1.9 817,802 - -0.9 817,802 - -0.5 817,807 + +0.1 817,808 - -2.2 817,840 + -1.6 817,841 - -1.7 817,841 - +0.1 817,858 + -0.9 817,858 + -0.6 817,858 + -0.7 817,859 - +0.1 817,859 - +0.1 817,859 - +0.4 817,859 - -0.9 817,889 + +0.6 817,890 - +0.1 817,900 - GFF738 0.13 -1.5 817,927 + GFF738 0.22 -0.9 817,928 - GFF738 0.22 -0.7 818,062 - GFF738 0.65 -0.8 818,134 + GFF738 0.88 +0.8 818,138 - GFF738 0.89 -0.9 818,169 - +0.5 818,176 + -0.2 818,177 - -0.3 818,181 + -0.1 818,182 - -1.6 818,234 + -0.6 818,250 + +0.7 818,251 - +0.4 818,254 + -0.5 818,255 - +0.5 818,255 - -0.2 818,255 - -0.2 818,280 + -0.3 818,280 + -1.2 818,281 - -0.8 818,283 - -1.2 818,285 - -1.5 818,285 - +0.7 818,285 - -0.4 818,293 - -0.2 818,304 - -1.7 818,399 - -1.2 818,399 - -0.5 818,401 + -0.5 818,401 + +0.6 818,401 + +0.5 818,401 + -0.2 818,402 - -0.3 818,407 + -0.3 818,408 - -0.9 818,446 + GFF739 0.13 -0.2 818,446 + GFF739 0.13 -1.9 818,496 + GFF739 0.24 +0.6 818,496 + GFF739 0.24 +0.1 818,496 + GFF739 0.24 -1.2 818,496 + GFF739 0.24 -0.1 818,496 + GFF739 0.24 -1.2 818,497 - GFF739 0.24 -0.1 818,497 - GFF739 0.24 -0.9 818,497 - GFF739 0.24 +0.7 818,497 - GFF739 0.24 -2.0 818,500 + GFF739 0.24 -0.9 818,500 + GFF739 0.24 -0.5 818,501 - GFF739 0.25 -0.6 818,536 + GFF739 0.32 -0.8 818,544 - GFF739 0.34 +0.4 818,575 + GFF739 0.40 -0.9 818,576 - GFF739 0.40 +1.4 818,576 - GFF739 0.40 +0.5 818,605 - GFF739 0.46 -2.6 818,618 - GFF739 0.49 -0.2 818,630 - GFF739 0.51 -0.9 818,630 - GFF739 0.51 -0.1 818,640 - GFF739 0.53 -0.5 818,643 + GFF739 0.54 -2.1 818,643 + GFF739 0.54 +0.4 818,643 + GFF739 0.54 -1.2 818,643 + GFF739 0.54 -0.5 818,644 - GFF739 0.54 +0.4 818,644 - GFF739 0.54 -0.8 818,665 + GFF739 0.58 -0.0 818,666 - GFF739 0.59 +0.5 818,666 - GFF739 0.59 -1.2 818,684 - GFF739 0.62 +1.7 818,691 + GFF739 0.64 -1.7 818,691 + GFF739 0.64 +1.1 818,692 - GFF739 0.64 -0.2 818,695 + GFF739 0.65 -0.1 818,713 + GFF739 0.68 -0.4 818,714 - GFF739 0.69 -2.5 818,735 - GFF739 0.73 -1.5 818,735 - GFF739 0.73 -0.8 818,771 - GFF739 0.80 +0.3 818,773 + GFF739 0.81 -0.3 818,774 - GFF739 0.81 -0.3 818,774 - GFF739 0.81 -0.2 818,805 + GFF739 0.87 -2.8 818,805 + GFF739 0.87 -0.9 818,824 + -0.7 818,825 - +0.5 818,845 + -1.1 818,845 + -1.2 818,845 + -1.9 818,845 + +0.0 818,845 + -2.1 818,846 - -1.5 818,846 - -1.5 818,874 + -1.7 818,875 - -0.9 818,900 - -1.0 818,920 + -0.6 818,920 + -1.0 818,920 + -0.4 818,921 - -0.5 818,921 - -0.5 818,923 + -1.5 818,924 - -0.9 818,924 - -1.6 818,924 - -1.1 818,924 - -0.7 818,948 - +0.1 818,971 + -0.2 818,971 + -0.4 818,971 + -0.9 818,972 - -0.5 818,972 - -0.6 818,972 - -0.6 818,975 + -0.5 818,975 + -1.1 818,975 + +0.0 818,975 + -0.2 818,975 + -0.8 818,975 + +0.1 818,976 - -0.5 818,976 - +0.1 818,976 - +0.5 818,976 - +0.3 818,976 - +2.1 818,976 - -1.2 819,000 - +0.5 819,003 + -0.7 819,004 - -1.5 819,010 + -0.5 819,011 - -1.5 819,011 - -1.4 819,027 - GFF740 0.13 -0.3 819,027 - GFF740 0.13 -0.7 819,027 - GFF740 0.13 +0.7 819,027 - GFF740 0.13 -0.3 819,045 + GFF740 0.18 +1.1 819,045 + GFF740 0.18 +0.5 819,045 + GFF740 0.18 -0.8 819,045 + GFF740 0.18 -0.2 819,045 + GFF740 0.18 +0.1 819,046 - GFF740 0.18 -0.2 819,048 + GFF740 0.18 -0.7 819,058 - GFF740 0.21 -1.5 819,080 + GFF740 0.27 -1.2 819,102 + GFF740 0.33 -0.3 819,102 + GFF740 0.33 -0.6 819,134 + GFF740 0.42 -0.7 819,134 - GFF740 0.42 -1.1 819,163 + GFF740 0.50 -0.8 819,163 + GFF740 0.50 -1.1 819,163 + GFF740 0.50 +0.5 819,164 - GFF740 0.50 -0.1
Or see this region's nucleotide sequence