Strain Fitness in Methylophilus sp. DMC18 around GFF71

Experiment: Methanol and casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Methanol and casaminos (C)
79,104	-		GFF69	0.59	+0.6
79,212	+		GFF69	0.66	+0.3
79,221	+		GFF69	0.67	+0.1
79,221	+		GFF69	0.67	-1.2
79,222	-		GFF69	0.67	+1.0
79,222	-		GFF69	0.67	-0.7
79,222	-		GFF69	0.67	-1.6
79,225	+		GFF69	0.67	+0.0
79,225	+		GFF69	0.67	+0.0
79,226	-		GFF69	0.67	-1.3
79,226	-		GFF69	0.67	-1.1
79,230	+		GFF69	0.68	-1.0
79,231	-		GFF69	0.68	-1.0
79,231	-		GFF69	0.68	-1.6
79,231	-		GFF69	0.68	-0.1
79,231	-		GFF69	0.68	-0.7
79,231	-		GFF69	0.68	-0.1
79,264	-		GFF69	0.70	-0.2
79,342	+		GFF69	0.76	-0.1
79,353	+		GFF69	0.76	-0.5
79,353	+		GFF69	0.76	+0.6
79,354	-		GFF69	0.76	+0.3
79,354	-		GFF69	0.76	-0.5
79,354	-		GFF69	0.76	+1.3
79,354	-		GFF69	0.76	+0.0
79,354	-		GFF69	0.76	-1.6
79,354	-		GFF69	0.76	-0.4
79,367	-		GFF69	0.77	-0.8
79,410	+		GFF69	0.80	+0.1
79,410	+		GFF69	0.80	-0.1
79,410	+		GFF69	0.80	+1.8
79,411	-		GFF69	0.81	-1.0
79,425	+		GFF69	0.82	+0.8
79,425	+		GFF69	0.82	-0.6
79,425	+		GFF69	0.82	-0.8
79,534	-		GFF69	0.89	+1.3
79,549	+				+0.7
79,549	+				-0.3
79,549	+				-0.3
79,549	+				+0.0
79,550	-				-0.6
79,550	-				-0.4
79,550	-				+0.6
79,648	-				-1.0
79,648	-				-0.6
79,687	-				-0.2
79,700	+				-1.8
79,839	+		GFF70	0.79	+0.4
79,839	+		GFF70	0.79	-1.8
79,839	+		GFF70	0.79	-1.0
79,839	+		GFF70	0.79	+0.4
79,840	-		GFF70	0.79	+0.4
79,840	-		GFF70	0.79	+0.0
79,840	-		GFF70	0.79	-1.5
79,840	-		GFF70	0.79	-0.5
79,919	+				-1.0
79,919	+				-0.0
79,920	-				-1.8
79,921	+				-0.2
79,921	+				-1.3
79,921	+				-0.6
79,922	-				-0.3
79,931	+				-1.0
79,931	+				-2.0
79,931	+				-2.0
79,931	+				+1.3
79,931	+				-0.9
79,932	-				-0.8
79,932	-				-0.2
79,932	-				+0.6
79,932	-				-1.7
79,958	+				-0.4
80,019	+				-1.0
80,019	+				-0.3
80,028	+				+0.2
80,028	+				-0.1
80,029	-				+0.6
80,034	+				-0.2
80,035	-				+0.0
80,035	-				+1.3
80,081	+				-0.8
80,081	+				-0.3
80,081	+				-1.3
80,081	+				+0.0
80,081	+				-1.9
80,081	+				+0.2
80,081	+				-0.8
80,082	-				-2.6
80,082	-				-0.6
80,082	-				-0.2
80,082	-				-1.3
80,082	-				+0.1
80,100	-				-0.2
80,100	-				-0.9
80,100	-				-1.2
80,100	-				-0.3
80,100	-				+0.7
80,171	+				-1.4
80,171	+				-1.7
80,189	+				+0.0
80,190	-				+0.2
80,238	-		GFF71	0.11	-0.7
80,238	-		GFF71	0.11	-0.3
80,238	-		GFF71	0.11	-0.4
80,387	+		GFF71	0.18	-1.0
80,387	+		GFF71	0.18	-1.0
80,387	+		GFF71	0.18	+0.7
80,395	+		GFF71	0.18	-0.2
80,395	+		GFF71	0.18	+0.0
80,395	+		GFF71	0.18	-1.2
80,395	+		GFF71	0.18	-0.0
80,395	+		GFF71	0.18	-0.4
80,396	-		GFF71	0.18	-1.0
80,396	-		GFF71	0.18	-1.0
80,396	-		GFF71	0.18	-0.2
80,396	-		GFF71	0.18	-0.4
80,396	-		GFF71	0.18	-2.3
80,396	-		GFF71	0.18	-1.3
80,396	-		GFF71	0.18	+1.0
80,396	-		GFF71	0.18	-1.3
80,396	-		GFF71	0.18	-0.3
80,557	-		GFF71	0.26	-1.1
80,577	+		GFF71	0.27	-0.8
80,660	+		GFF71	0.31	-0.4
80,698	-		GFF71	0.33	+0.6
80,698	-		GFF71	0.33	-1.3
80,698	-		GFF71	0.33	-0.9
80,719	+		GFF71	0.34	-0.8
80,719	+		GFF71	0.34	-0.6
80,719	+		GFF71	0.34	-0.3
80,719	+		GFF71	0.34	+0.2
80,719	+		GFF71	0.34	-0.3
80,720	-		GFF71	0.34	-0.3
80,720	-		GFF71	0.34	-0.3
80,720	-		GFF71	0.34	-1.0
80,720	-		GFF71	0.34	-0.4
80,720	-		GFF71	0.34	-1.3
80,753	+		GFF71	0.36	+0.0
80,753	+		GFF71	0.36	-0.9
80,753	+		GFF71	0.36	-1.7
80,754	-		GFF71	0.36	-0.2
80,754	-		GFF71	0.36	-0.8
80,754	-		GFF71	0.36	-1.3
80,754	-		GFF71	0.36	-1.0
80,755	+		GFF71	0.36	-0.8
80,755	+		GFF71	0.36	+0.3
80,755	+		GFF71	0.36	+0.8
80,755	+		GFF71	0.36	-1.6
80,756	-		GFF71	0.36	-0.3
80,792	+		GFF71	0.38	+0.4
80,793	-		GFF71	0.38	-0.3
80,798	+		GFF71	0.38	+1.0
80,799	-		GFF71	0.38	-1.2
81,093	-		GFF71	0.53	-1.8
81,093	-		GFF71	0.53	+0.4
81,093	-		GFF71	0.53	+0.7
81,124	+		GFF71	0.54	-1.6
81,124	+		GFF71	0.54	-0.6
81,124	+		GFF71	0.54	-0.7
81,124	+		GFF71	0.54	+0.0
81,124	+		GFF71	0.54	-0.6
81,125	-		GFF71	0.54	+0.4
81,125	-		GFF71	0.54	-0.2
81,156	+		GFF71	0.56	+0.0
81,157	-		GFF71	0.56	-1.5
81,157	-		GFF71	0.56	-0.8
81,157	-		GFF71	0.56	-1.3
81,174	-		GFF71	0.57	+0.5
81,207	+		GFF71	0.58	-1.3
81,207	+		GFF71	0.58	-1.3
81,207	+		GFF71	0.58	+0.8
81,207	+		GFF71	0.58	-2.1
81,208	-		GFF71	0.58	+0.6
81,239	+		GFF71	0.60	+0.0
81,239	+		GFF71	0.60	-0.3
81,239	+		GFF71	0.60	+0.6
81,239	+		GFF71	0.60	-0.8
81,240	-		GFF71	0.60	+0.0
81,240	-		GFF71	0.60	-0.6
81,240	-		GFF71	0.60	-1.2
81,240	-		GFF71	0.60	+0.0
81,264	+		GFF71	0.61	+0.6
81,399	-		GFF71	0.68	-1.2
81,399	-		GFF71	0.68	+0.0
81,475	+		GFF71	0.71	+0.6
81,476	-		GFF71	0.71	+0.7
81,620	+		GFF71	0.78	-0.2
81,620	+		GFF71	0.78	-0.3
81,741	+		GFF71	0.84	+0.6
81,741	+		GFF71	0.84	+0.0
81,742	-		GFF71	0.84	+0.2
81,823	-		GFF71	0.88	+0.7
81,823	-		GFF71	0.88	+0.0
81,855	+		GFF71	0.90	-0.5
81,855	+		GFF71	0.90	-1.0
81,855	+		GFF71	0.90	-0.8
81,856	-				-0.8
81,856	-				-0.6
81,938	+				-0.8
81,938	+				+0.2
81,939	-				-0.6
81,939	-				-1.6
82,005	+				-0.3
82,006	-				+0.3
82,006	-				-0.6
82,013	+				-0.4
82,013	+				-1.3
82,013	+				-1.3
82,013	+				-0.1
82,014	-				-0.1
82,014	-				-1.0
82,014	-				-0.8
82,014	-				-0.5
82,014	-				-0.9
82,132	+				-0.9
82,132	+				-1.8
82,133	-				-1.2
82,133	-				-1.3
82,134	+				+0.6
82,134	+				-1.5
82,134	+				-2.6
82,134	+				+0.3
82,135	-				+0.0
82,135	-				-1.1
82,135	-				-0.1
82,135	-				-0.2
82,135	-				-1.6
82,153	-				-1.0
82,159	-				-1.4
82,200	+				+0.0
82,201	-				-0.6
82,201	-				-0.9
82,201	-				-0.2
82,262	+				-1.1
82,263	-				-0.1
82,263	-				+0.2
82,298	+				+0.0
82,298	+				-1.7
82,299	-				-0.3
82,306	+				+0.0
82,307	-				+0.8