Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF681 and GFF682 are separated by 61 nucleotides GFF682 and GFF683 are separated by 38 nucleotides GFF683 and GFF684 are separated by 264 nucleotides
GFF681 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase, at 758,364 to 759,233
GFF681
GFF682 - Putative pterin-4-alpha-carbinolamine dehydratase, at 759,295 to 759,669
GFF682
GFF683 - tRNA dimethylallyltransferase, at 759,708 to 760,661
GFF683
GFF684 - hypothetical protein, at 760,926 to 762,329
GFF684
Position (kb) 759
760
761 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 758.739 kb on + strand, within GFF681 at 758.739 kb on + strand, within GFF681 at 758.740 kb on - strand, within GFF681 at 758.816 kb on + strand, within GFF681 at 758.816 kb on + strand, within GFF681 at 758.817 kb on - strand, within GFF681 at 758.817 kb on - strand, within GFF681 at 758.871 kb on + strand, within GFF681 at 758.871 kb on + strand, within GFF681 at 758.871 kb on + strand, within GFF681 at 758.871 kb on + strand, within GFF681 at 758.871 kb on + strand, within GFF681 at 758.872 kb on - strand, within GFF681 at 758.872 kb on - strand, within GFF681 at 758.872 kb on - strand, within GFF681 at 758.883 kb on + strand, within GFF681 at 758.883 kb on + strand, within GFF681 at 758.884 kb on - strand, within GFF681 at 758.884 kb on - strand, within GFF681 at 758.916 kb on + strand, within GFF681 at 758.916 kb on + strand, within GFF681 at 758.971 kb on - strand, within GFF681 at 758.971 kb on - strand, within GFF681 at 759.005 kb on + strand, within GFF681 at 759.005 kb on + strand, within GFF681 at 759.005 kb on + strand, within GFF681 at 759.005 kb on + strand, within GFF681 at 759.005 kb on + strand, within GFF681 at 759.005 kb on + strand, within GFF681 at 759.005 kb on + strand, within GFF681 at 759.005 kb on + strand, within GFF681 at 759.006 kb on - strand, within GFF681 at 759.006 kb on - strand, within GFF681 at 759.006 kb on - strand, within GFF681 at 759.010 kb on + strand, within GFF681 at 759.066 kb on + strand, within GFF681 at 759.066 kb on + strand, within GFF681 at 759.067 kb on - strand, within GFF681 at 759.085 kb on + strand, within GFF681 at 759.085 kb on + strand, within GFF681 at 759.085 kb on + strand, within GFF681 at 759.086 kb on - strand, within GFF681 at 759.089 kb on + strand, within GFF681 at 759.089 kb on + strand, within GFF681 at 759.095 kb on + strand, within GFF681 at 759.102 kb on + strand, within GFF681 at 759.151 kb on + strand at 759.152 kb on - strand at 759.229 kb on + strand at 759.229 kb on + strand at 759.229 kb on + strand at 759.229 kb on + strand at 759.229 kb on + strand at 759.229 kb on + strand at 759.230 kb on - strand at 759.231 kb on + strand at 759.231 kb on + strand at 759.232 kb on - strand at 759.232 kb on - strand at 759.254 kb on - strand at 759.254 kb on - strand at 759.255 kb on + strand at 759.255 kb on + strand at 759.255 kb on + strand at 759.255 kb on + strand at 759.256 kb on - strand at 759.256 kb on - strand at 759.294 kb on + strand at 759.308 kb on + strand at 759.308 kb on + strand at 759.308 kb on + strand at 759.309 kb on - strand at 759.309 kb on - strand at 759.309 kb on - strand at 759.342 kb on + strand, within GFF682 at 759.361 kb on + strand, within GFF682 at 759.364 kb on + strand, within GFF682 at 759.364 kb on + strand, within GFF682 at 759.364 kb on + strand, within GFF682 at 759.365 kb on - strand, within GFF682 at 759.380 kb on + strand, within GFF682 at 759.380 kb on + strand, within GFF682 at 759.381 kb on - strand, within GFF682 at 759.381 kb on - strand, within GFF682 at 759.381 kb on - strand, within GFF682 at 759.381 kb on - strand, within GFF682 at 759.387 kb on + strand, within GFF682 at 759.387 kb on + strand, within GFF682 at 759.391 kb on + strand, within GFF682 at 759.391 kb on + strand, within GFF682 at 759.394 kb on - strand, within GFF682 at 759.447 kb on - strand, within GFF682 at 759.487 kb on + strand, within GFF682 at 759.487 kb on + strand, within GFF682 at 759.531 kb on + strand, within GFF682 at 759.547 kb on - strand, within GFF682 at 759.547 kb on - strand, within GFF682 at 759.548 kb on + strand, within GFF682 at 759.548 kb on + strand, within GFF682 at 759.548 kb on + strand, within GFF682 at 759.548 kb on + strand, within GFF682 at 759.549 kb on - strand, within GFF682 at 759.549 kb on - strand, within GFF682 at 759.645 kb on + strand at 759.646 kb on - strand at 759.650 kb on - strand at 759.659 kb on - strand at 759.659 kb on - strand at 759.667 kb on + strand at 759.667 kb on + strand at 759.668 kb on - strand at 759.678 kb on - strand at 759.683 kb on + strand at 759.707 kb on + strand at 759.707 kb on + strand at 759.707 kb on + strand at 759.708 kb on - strand at 759.734 kb on - strand at 759.797 kb on - strand at 759.873 kb on - strand, within GFF683 at 759.913 kb on + strand, within GFF683 at 759.922 kb on + strand, within GFF683 at 759.922 kb on + strand, within GFF683 at 760.039 kb on - strand, within GFF683 at 760.162 kb on + strand, within GFF683 at 760.162 kb on + strand, within GFF683 at 760.162 kb on + strand, within GFF683 at 760.163 kb on - strand, within GFF683 at 760.163 kb on - strand, within GFF683 at 760.163 kb on - strand, within GFF683 at 760.163 kb on - strand, within GFF683 at 760.230 kb on + strand, within GFF683 at 760.388 kb on + strand, within GFF683 at 760.419 kb on + strand, within GFF683 at 760.530 kb on + strand, within GFF683 at 760.531 kb on - strand, within GFF683 at 760.570 kb on + strand at 760.571 kb on - strand at 760.577 kb on + strand at 760.588 kb on + strand at 760.588 kb on + strand at 760.588 kb on + strand at 760.589 kb on - strand at 760.589 kb on - strand at 760.597 kb on + strand at 760.597 kb on + strand at 760.597 kb on + strand at 760.686 kb on + strand at 760.686 kb on + strand at 760.686 kb on + strand at 760.687 kb on - strand at 760.707 kb on + strand at 760.707 kb on + strand at 760.708 kb on - strand at 760.708 kb on - strand at 760.770 kb on - strand at 760.772 kb on + strand at 760.773 kb on - strand at 760.824 kb on + strand at 760.825 kb on - strand at 760.839 kb on + strand at 760.839 kb on + strand at 760.839 kb on + strand at 760.840 kb on - strand at 760.840 kb on - strand at 760.840 kb on - strand at 760.858 kb on + strand at 760.858 kb on + strand at 760.859 kb on - strand at 760.859 kb on - strand at 760.859 kb on - strand at 760.867 kb on - strand at 760.901 kb on - strand at 760.924 kb on + strand at 760.925 kb on - strand at 760.925 kb on - strand at 760.925 kb on - strand at 760.931 kb on - strand at 760.985 kb on + strand at 761.015 kb on - strand at 761.026 kb on + strand at 761.027 kb on - strand at 761.027 kb on - strand at 761.048 kb on + strand at 761.049 kb on - strand at 761.073 kb on - strand, within GFF684 at 761.130 kb on - strand, within GFF684 at 761.130 kb on - strand, within GFF684 at 761.132 kb on - strand, within GFF684 at 761.132 kb on - strand, within GFF684 at 761.132 kb on - strand, within GFF684 at 761.351 kb on - strand, within GFF684 at 761.351 kb on - strand, within GFF684 at 761.355 kb on + strand, within GFF684 at 761.355 kb on + strand, within GFF684 at 761.400 kb on - strand, within GFF684 at 761.517 kb on + strand, within GFF684 at 761.518 kb on - strand, within GFF684 at 761.518 kb on - strand, within GFF684 at 761.525 kb on + strand, within GFF684 at 761.548 kb on - strand, within GFF684 at 761.636 kb on + strand, within GFF684 at 761.644 kb on - strand, within GFF684
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 758,739 + GFF681 0.43 -0.5 758,739 + GFF681 0.43 -0.8 758,740 - GFF681 0.43 -0.5 758,816 + GFF681 0.52 -0.8 758,816 + GFF681 0.52 -1.7 758,817 - GFF681 0.52 -1.2 758,817 - GFF681 0.52 -0.8 758,871 + GFF681 0.58 -0.7 758,871 + GFF681 0.58 +0.8 758,871 + GFF681 0.58 -1.5 758,871 + GFF681 0.58 -1.2 758,871 + GFF681 0.58 -1.3 758,872 - GFF681 0.58 -0.1 758,872 - GFF681 0.58 -0.5 758,872 - GFF681 0.58 -0.3 758,883 + GFF681 0.60 -1.3 758,883 + GFF681 0.60 -1.2 758,884 - GFF681 0.60 -0.2 758,884 - GFF681 0.60 -0.1 758,916 + GFF681 0.63 -0.1 758,916 + GFF681 0.63 -0.6 758,971 - GFF681 0.70 -0.2 758,971 - GFF681 0.70 +0.1 759,005 + GFF681 0.74 -1.2 759,005 + GFF681 0.74 +0.5 759,005 + GFF681 0.74 +0.8 759,005 + GFF681 0.74 -1.2 759,005 + GFF681 0.74 +0.1 759,005 + GFF681 0.74 -0.5 759,005 + GFF681 0.74 +0.4 759,005 + GFF681 0.74 -0.7 759,006 - GFF681 0.74 +0.0 759,006 - GFF681 0.74 -0.9 759,006 - GFF681 0.74 -0.2 759,010 + GFF681 0.74 -0.7 759,066 + GFF681 0.81 +0.2 759,066 + GFF681 0.81 -0.9 759,067 - GFF681 0.81 -0.2 759,085 + GFF681 0.83 -1.0 759,085 + GFF681 0.83 -1.2 759,085 + GFF681 0.83 +0.9 759,086 - GFF681 0.83 +0.3 759,089 + GFF681 0.83 -0.2 759,089 + GFF681 0.83 +0.1 759,095 + GFF681 0.84 +0.0 759,102 + GFF681 0.85 -2.3 759,151 + -0.2 759,152 - +0.3 759,229 + -0.9 759,229 + -0.5 759,229 + -2.1 759,229 + -1.7 759,229 + -0.2 759,229 + -0.6 759,230 - -1.0 759,231 + -2.1 759,231 + -0.7 759,232 - +1.1 759,232 - -0.1 759,254 - -0.9 759,254 - -0.7 759,255 + +0.4 759,255 + -0.1 759,255 + -0.9 759,255 + -1.2 759,256 - -0.2 759,256 - -0.6 759,294 + +0.4 759,308 + -0.6 759,308 + -1.2 759,308 + -0.8 759,309 - -1.5 759,309 - +0.5 759,309 - -0.1 759,342 + GFF682 0.13 -0.1 759,361 + GFF682 0.18 +0.1 759,364 + GFF682 0.18 +0.7 759,364 + GFF682 0.18 +1.1 759,364 + GFF682 0.18 -3.3 759,365 - GFF682 0.19 -0.3 759,380 + GFF682 0.23 +0.2 759,380 + GFF682 0.23 -1.7 759,381 - GFF682 0.23 -0.5 759,381 - GFF682 0.23 -0.5 759,381 - GFF682 0.23 -0.9 759,381 - GFF682 0.23 -1.1 759,387 + GFF682 0.25 -0.5 759,387 + GFF682 0.25 -0.3 759,391 + GFF682 0.26 -0.9 759,391 + GFF682 0.26 -0.6 759,394 - GFF682 0.26 -0.5 759,447 - GFF682 0.41 +0.1 759,487 + GFF682 0.51 -1.1 759,487 + GFF682 0.51 -0.8 759,531 + GFF682 0.63 +0.5 759,547 - GFF682 0.67 -0.1 759,547 - GFF682 0.67 -0.3 759,548 + GFF682 0.67 -1.5 759,548 + GFF682 0.67 -0.5 759,548 + GFF682 0.67 -0.2 759,548 + GFF682 0.67 -0.6 759,549 - GFF682 0.68 +0.1 759,549 - GFF682 0.68 -2.1 759,645 + -0.2 759,646 - -0.1 759,650 - -0.8 759,659 - +0.1 759,659 - -0.3 759,667 + -1.6 759,667 + -0.6 759,668 - -0.9 759,678 - +0.4 759,683 + +1.4 759,707 + +0.4 759,707 + -2.9 759,707 + -1.2 759,708 - +0.1 759,734 - -0.6 759,797 - -2.2 759,873 - GFF683 0.17 -2.3 759,913 + GFF683 0.21 -0.9 759,922 + GFF683 0.22 -0.3 759,922 + GFF683 0.22 -1.1 760,039 - GFF683 0.35 -1.2 760,162 + GFF683 0.48 -0.9 760,162 + GFF683 0.48 -0.5 760,162 + GFF683 0.48 -2.1 760,163 - GFF683 0.48 -1.1 760,163 - GFF683 0.48 -2.3 760,163 - GFF683 0.48 -0.9 760,163 - GFF683 0.48 -2.5 760,230 + GFF683 0.55 -0.8 760,388 + GFF683 0.71 +0.1 760,419 + GFF683 0.75 -0.7 760,530 + GFF683 0.86 -1.6 760,531 - GFF683 0.86 +0.1 760,570 + -1.2 760,571 - +0.7 760,577 + -0.5 760,588 + +0.1 760,588 + -2.3 760,588 + -0.9 760,589 - -1.3 760,589 - -0.6 760,597 + -1.2 760,597 + -2.5 760,597 + +0.1 760,686 + -0.5 760,686 + -0.3 760,686 + -0.2 760,687 - +1.1 760,707 + +0.7 760,707 + -0.9 760,708 - -0.9 760,708 - -1.7 760,770 - -0.3 760,772 + +0.4 760,773 - +0.1 760,824 + -1.2 760,825 - -0.1 760,839 + -1.5 760,839 + -1.7 760,839 + +0.4 760,840 - -0.2 760,840 - -0.3 760,840 - -0.8 760,858 + -0.2 760,858 + +0.1 760,859 - -0.9 760,859 - -0.5 760,859 - +0.1 760,867 - -0.5 760,901 - -0.7 760,924 + -1.9 760,925 - -0.2 760,925 - -0.5 760,925 - -0.9 760,931 - +1.8 760,985 + +0.4 761,015 - -0.9 761,026 + -0.9 761,027 - -0.7 761,027 - +0.1 761,048 + +0.1 761,049 - +1.4 761,073 - GFF684 0.10 -1.2 761,130 - GFF684 0.15 -0.9 761,130 - GFF684 0.15 -1.2 761,132 - GFF684 0.15 -0.2 761,132 - GFF684 0.15 -0.5 761,132 - GFF684 0.15 -0.2 761,351 - GFF684 0.30 -0.9 761,351 - GFF684 0.30 -1.9 761,355 + GFF684 0.31 -1.2 761,355 + GFF684 0.31 -0.9 761,400 - GFF684 0.34 -0.9 761,517 + GFF684 0.42 +0.7 761,518 - GFF684 0.42 -0.7 761,518 - GFF684 0.42 -1.7 761,525 + GFF684 0.43 +0.8 761,548 - GFF684 0.44 +0.1 761,636 + GFF684 0.51 -0.9 761,644 - GFF684 0.51 -1.5
Or see this region's nucleotide sequence