Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF623 and GFF624 are separated by 34 nucleotides GFF624 and GFF625 are separated by 191 nucleotides GFF625 and GFF626 are separated by 109 nucleotides
GFF623 - hypothetical protein, at 691,242 to 693,485
GFF623
GFF624 - hypothetical protein, at 693,520 to 693,894
GFF624
GFF625 - hypothetical protein, at 694,086 to 694,580
GFF625
GFF626 - hypothetical protein, at 694,690 to 695,133
GFF626
Position (kb) 693
694 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 692.564 kb on + strand, within GFF623 at 692.590 kb on + strand, within GFF623 at 692.590 kb on + strand, within GFF623 at 692.590 kb on + strand, within GFF623 at 692.590 kb on + strand, within GFF623 at 692.591 kb on - strand, within GFF623 at 692.591 kb on - strand, within GFF623 at 692.591 kb on - strand, within GFF623 at 692.592 kb on + strand, within GFF623 at 692.593 kb on - strand, within GFF623 at 692.649 kb on + strand, within GFF623 at 692.649 kb on + strand, within GFF623 at 692.649 kb on + strand, within GFF623 at 692.649 kb on + strand, within GFF623 at 692.649 kb on + strand, within GFF623 at 692.649 kb on + strand, within GFF623 at 692.650 kb on - strand, within GFF623 at 692.650 kb on - strand, within GFF623 at 692.650 kb on - strand, within GFF623 at 692.650 kb on - strand, within GFF623 at 692.669 kb on + strand, within GFF623 at 692.675 kb on + strand, within GFF623 at 692.676 kb on - strand, within GFF623 at 692.679 kb on + strand, within GFF623 at 692.690 kb on + strand, within GFF623 at 692.690 kb on + strand, within GFF623 at 692.691 kb on - strand, within GFF623 at 692.726 kb on + strand, within GFF623 at 692.771 kb on - strand, within GFF623 at 692.933 kb on - strand, within GFF623 at 693.002 kb on + strand, within GFF623 at 693.002 kb on + strand, within GFF623 at 693.038 kb on + strand, within GFF623 at 693.054 kb on - strand, within GFF623 at 693.054 kb on - strand, within GFF623 at 693.061 kb on + strand, within GFF623 at 693.064 kb on + strand, within GFF623 at 693.065 kb on - strand, within GFF623 at 693.065 kb on - strand, within GFF623 at 693.084 kb on + strand, within GFF623 at 693.084 kb on + strand, within GFF623 at 693.085 kb on - strand, within GFF623 at 693.187 kb on + strand, within GFF623 at 693.187 kb on + strand, within GFF623 at 693.188 kb on - strand, within GFF623 at 693.188 kb on - strand, within GFF623 at 693.188 kb on - strand, within GFF623 at 693.208 kb on - strand, within GFF623 at 693.222 kb on + strand, within GFF623 at 693.232 kb on + strand, within GFF623 at 693.232 kb on + strand, within GFF623 at 693.233 kb on - strand, within GFF623 at 693.245 kb on + strand, within GFF623 at 693.269 kb on + strand at 693.279 kb on - strand at 693.280 kb on + strand at 693.280 kb on + strand at 693.280 kb on + strand at 693.280 kb on + strand at 693.280 kb on + strand at 693.280 kb on + strand at 693.280 kb on + strand at 693.281 kb on - strand at 693.281 kb on - strand at 693.281 kb on - strand at 693.281 kb on - strand at 693.281 kb on - strand at 693.281 kb on - strand at 693.346 kb on + strand at 693.367 kb on + strand at 693.426 kb on + strand at 693.426 kb on + strand at 693.426 kb on + strand at 693.426 kb on + strand at 693.426 kb on + strand at 693.427 kb on - strand at 693.431 kb on - strand at 693.483 kb on + strand at 693.498 kb on + strand at 693.507 kb on - strand at 693.516 kb on - strand at 693.593 kb on + strand, within GFF624 at 693.593 kb on + strand, within GFF624 at 693.593 kb on + strand, within GFF624 at 693.593 kb on + strand, within GFF624 at 693.594 kb on - strand, within GFF624 at 693.594 kb on - strand, within GFF624 at 693.644 kb on + strand, within GFF624 at 693.644 kb on + strand, within GFF624 at 693.645 kb on - strand, within GFF624 at 693.645 kb on - strand, within GFF624 at 693.760 kb on + strand, within GFF624 at 693.791 kb on + strand, within GFF624 at 693.792 kb on - strand, within GFF624 at 693.873 kb on + strand at 693.873 kb on + strand at 693.873 kb on + strand at 693.874 kb on - strand at 693.874 kb on - strand at 693.874 kb on - strand at 693.877 kb on + strand at 693.880 kb on - strand at 693.886 kb on + strand at 693.886 kb on + strand at 693.886 kb on + strand at 693.892 kb on + strand at 693.903 kb on + strand at 693.924 kb on + strand at 693.926 kb on + strand at 693.926 kb on + strand at 693.927 kb on - strand at 693.955 kb on + strand at 693.966 kb on + strand at 693.966 kb on + strand at 693.966 kb on + strand at 693.967 kb on - strand at 693.967 kb on - strand at 693.968 kb on + strand at 694.008 kb on + strand at 694.008 kb on + strand at 694.008 kb on + strand at 694.008 kb on + strand at 694.009 kb on - strand at 694.024 kb on + strand at 694.024 kb on + strand at 694.025 kb on - strand at 694.042 kb on + strand at 694.042 kb on + strand at 694.043 kb on - strand at 694.055 kb on + strand at 694.056 kb on - strand at 694.060 kb on + strand at 694.060 kb on + strand at 694.061 kb on - strand at 694.061 kb on - strand at 694.069 kb on - strand at 694.071 kb on - strand at 694.081 kb on + strand at 694.081 kb on + strand at 694.082 kb on - strand at 694.099 kb on + strand at 694.099 kb on + strand at 694.099 kb on + strand at 694.100 kb on - strand at 694.100 kb on - strand at 694.195 kb on + strand, within GFF625 at 694.244 kb on + strand, within GFF625 at 694.244 kb on + strand, within GFF625 at 694.256 kb on + strand, within GFF625 at 694.257 kb on - strand, within GFF625 at 694.268 kb on + strand, within GFF625 at 694.346 kb on + strand, within GFF625 at 694.346 kb on + strand, within GFF625 at 694.346 kb on + strand, within GFF625 at 694.346 kb on + strand, within GFF625 at 694.346 kb on + strand, within GFF625 at 694.347 kb on - strand, within GFF625 at 694.347 kb on - strand, within GFF625 at 694.365 kb on + strand, within GFF625 at 694.366 kb on - strand, within GFF625 at 694.375 kb on + strand, within GFF625 at 694.376 kb on - strand, within GFF625 at 694.392 kb on + strand, within GFF625 at 694.393 kb on - strand, within GFF625 at 694.393 kb on - strand, within GFF625 at 694.393 kb on - strand, within GFF625 at 694.487 kb on + strand, within GFF625 at 694.488 kb on - strand, within GFF625 at 694.504 kb on - strand, within GFF625 at 694.589 kb on + strand at 694.589 kb on + strand at 694.590 kb on - strand at 694.606 kb on + strand at 694.606 kb on + strand at 694.606 kb on + strand at 694.606 kb on + strand at 694.607 kb on - strand at 694.631 kb on + strand at 694.691 kb on + strand at 694.691 kb on + strand at 694.691 kb on + strand at 694.692 kb on - strand at 694.710 kb on + strand at 694.722 kb on + strand at 694.722 kb on + strand at 694.722 kb on + strand at 694.722 kb on + strand at 694.722 kb on + strand at 694.780 kb on - strand, within GFF626 at 694.780 kb on - strand, within GFF626 at 694.830 kb on + strand, within GFF626 at 694.879 kb on + strand, within GFF626 at 694.880 kb on - strand, within GFF626 at 694.880 kb on - strand, within GFF626 at 694.884 kb on + strand, within GFF626 at 694.884 kb on + strand, within GFF626 at 694.884 kb on + strand, within GFF626 at 694.885 kb on - strand, within GFF626 at 694.885 kb on - strand, within GFF626 at 694.885 kb on - strand, within GFF626
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 692,564 + GFF623 0.59 -0.9 692,590 + GFF623 0.60 -0.8 692,590 + GFF623 0.60 -0.7 692,590 + GFF623 0.60 -1.5 692,590 + GFF623 0.60 -1.5 692,591 - GFF623 0.60 -0.1 692,591 - GFF623 0.60 -0.6 692,591 - GFF623 0.60 -0.9 692,592 + GFF623 0.60 +0.1 692,593 - GFF623 0.60 +0.1 692,649 + GFF623 0.63 -1.9 692,649 + GFF623 0.63 +0.3 692,649 + GFF623 0.63 -1.9 692,649 + GFF623 0.63 +0.6 692,649 + GFF623 0.63 -0.5 692,649 + GFF623 0.63 +0.3 692,650 - GFF623 0.63 +0.2 692,650 - GFF623 0.63 -1.1 692,650 - GFF623 0.63 -2.5 692,650 - GFF623 0.63 -1.5 692,669 + GFF623 0.64 -0.6 692,675 + GFF623 0.64 -0.9 692,676 - GFF623 0.64 -0.2 692,679 + GFF623 0.64 +0.3 692,690 + GFF623 0.65 +0.6 692,690 + GFF623 0.65 -0.0 692,691 - GFF623 0.65 -0.0 692,726 + GFF623 0.66 -0.7 692,771 - GFF623 0.68 -1.5 692,933 - GFF623 0.75 -0.6 693,002 + GFF623 0.78 -0.5 693,002 + GFF623 0.78 -1.5 693,038 + GFF623 0.80 +0.4 693,054 - GFF623 0.81 +0.9 693,054 - GFF623 0.81 -1.7 693,061 + GFF623 0.81 -0.8 693,064 + GFF623 0.81 -1.2 693,065 - GFF623 0.81 -0.1 693,065 - GFF623 0.81 -1.2 693,084 + GFF623 0.82 -0.6 693,084 + GFF623 0.82 +0.1 693,085 - GFF623 0.82 +0.1 693,187 + GFF623 0.87 -1.1 693,187 + GFF623 0.87 -0.7 693,188 - GFF623 0.87 -0.9 693,188 - GFF623 0.87 -1.1 693,188 - GFF623 0.87 -2.1 693,208 - GFF623 0.88 -0.5 693,222 + GFF623 0.88 -0.7 693,232 + GFF623 0.89 -1.2 693,232 + GFF623 0.89 +0.4 693,233 - GFF623 0.89 -0.9 693,245 + GFF623 0.89 -0.5 693,269 + -0.6 693,279 - -0.9 693,280 + -0.1 693,280 + -1.7 693,280 + -0.5 693,280 + -2.0 693,280 + -1.2 693,280 + -0.8 693,280 + -0.6 693,281 - -1.1 693,281 - -0.5 693,281 - +1.4 693,281 - +0.3 693,281 - +0.8 693,281 - -1.8 693,346 + -1.2 693,367 + +0.1 693,426 + -0.7 693,426 + -1.2 693,426 + +0.1 693,426 + +1.1 693,426 + -0.5 693,427 - +0.1 693,431 - -0.9 693,483 + -0.6 693,498 + -0.1 693,507 - +0.6 693,516 - +0.1 693,593 + GFF624 0.19 -1.7 693,593 + GFF624 0.19 -0.9 693,593 + GFF624 0.19 +0.4 693,593 + GFF624 0.19 -1.2 693,594 - GFF624 0.20 -0.1 693,594 - GFF624 0.20 -1.3 693,644 + GFF624 0.33 -1.6 693,644 + GFF624 0.33 -3.6 693,645 - GFF624 0.33 -0.7 693,645 - GFF624 0.33 -0.9 693,760 + GFF624 0.64 +0.7 693,791 + GFF624 0.72 +0.3 693,792 - GFF624 0.73 -1.5 693,873 + -1.2 693,873 + -1.9 693,873 + +0.5 693,874 - -0.3 693,874 - -0.2 693,874 - -0.7 693,877 + -0.5 693,880 - -1.4 693,886 + -2.0 693,886 + -0.7 693,886 + -1.2 693,892 + -0.3 693,903 + -0.2 693,924 + -0.7 693,926 + -1.1 693,926 + -0.1 693,927 - -0.9 693,955 + -0.9 693,966 + -0.1 693,966 + +0.2 693,966 + +0.5 693,967 - +1.1 693,967 - +0.1 693,968 + -2.2 694,008 + -0.9 694,008 + -0.1 694,008 + -0.1 694,008 + +0.3 694,009 - +0.6 694,024 + -0.6 694,024 + -1.5 694,025 - +0.1 694,042 + -0.3 694,042 + -0.6 694,043 - -0.5 694,055 + -0.5 694,056 - +0.3 694,060 + -0.9 694,060 + +0.7 694,061 - -0.8 694,061 - -1.5 694,069 - -1.7 694,071 - -0.3 694,081 + -2.1 694,081 + +0.3 694,082 - +0.9 694,099 + +0.5 694,099 + -0.3 694,099 + -1.7 694,100 - -0.2 694,100 - +0.9 694,195 + GFF625 0.22 +0.1 694,244 + GFF625 0.32 -0.4 694,244 + GFF625 0.32 -1.5 694,256 + GFF625 0.34 -0.4 694,257 - GFF625 0.35 +0.1 694,268 + GFF625 0.37 -1.5 694,346 + GFF625 0.53 -1.9 694,346 + GFF625 0.53 -1.9 694,346 + GFF625 0.53 +0.1 694,346 + GFF625 0.53 -0.3 694,346 + GFF625 0.53 -1.5 694,347 - GFF625 0.53 -0.5 694,347 - GFF625 0.53 -0.6 694,365 + GFF625 0.56 -1.1 694,366 - GFF625 0.57 -0.9 694,375 + GFF625 0.58 -1.7 694,376 - GFF625 0.59 -0.1 694,392 + GFF625 0.62 -0.7 694,393 - GFF625 0.62 -0.7 694,393 - GFF625 0.62 -3.3 694,393 - GFF625 0.62 -1.5 694,487 + GFF625 0.81 -0.1 694,488 - GFF625 0.81 -0.9 694,504 - GFF625 0.84 -1.2 694,589 + -1.2 694,589 + +0.1 694,590 - -0.8 694,606 + -1.1 694,606 + -1.7 694,606 + +0.4 694,606 + -0.7 694,607 - -0.7 694,631 + -1.5 694,691 + -0.8 694,691 + +0.7 694,691 + -1.6 694,692 - -1.2 694,710 + -1.2 694,722 + -0.0 694,722 + -2.3 694,722 + -0.1 694,722 + -0.3 694,722 + -3.1 694,780 - GFF626 0.20 -0.3 694,780 - GFF626 0.20 +0.1 694,830 + GFF626 0.32 +1.1 694,879 + GFF626 0.43 -0.4 694,880 - GFF626 0.43 +0.9 694,880 - GFF626 0.43 -2.6 694,884 + GFF626 0.44 +0.2 694,884 + GFF626 0.44 +0.1 694,884 + GFF626 0.44 -0.1 694,885 - GFF626 0.44 -0.5 694,885 - GFF626 0.44 -0.6 694,885 - GFF626 0.44 -0.9
Or see this region's nucleotide sequence