Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF614 and GFF615 are separated by 123 nucleotides GFF615 and GFF616 are separated by 8 nucleotides GFF616 and GFF617 are separated by 131 nucleotides GFF617 and GFF618 overlap by 1 nucleotides
GFF614 - hypothetical protein, at 680,931 to 681,347
GFF614
GFF615 - Peroxide operon regulator, at 681,471 to 681,944
GFF615
GFF616 - Protein adenylyltransferase SelO, at 681,953 to 683,539
GFF616
GFF617 - hypothetical protein, at 683,671 to 684,219
GFF617
GFF618 - hypothetical protein, at 684,219 to 684,764
GFF618
Position (kb) 681
682
683
684 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 680.963 kb on + strand at 680.964 kb on - strand at 680.964 kb on - strand at 680.964 kb on - strand at 681.036 kb on - strand, within GFF614 at 681.048 kb on + strand, within GFF614 at 681.048 kb on + strand, within GFF614 at 681.048 kb on + strand, within GFF614 at 681.048 kb on + strand, within GFF614 at 681.048 kb on + strand, within GFF614 at 681.048 kb on + strand, within GFF614 at 681.049 kb on - strand, within GFF614 at 681.051 kb on + strand, within GFF614 at 681.052 kb on - strand, within GFF614 at 681.101 kb on - strand, within GFF614 at 681.101 kb on - strand, within GFF614 at 681.101 kb on - strand, within GFF614 at 681.238 kb on - strand, within GFF614 at 681.238 kb on - strand, within GFF614 at 681.239 kb on + strand, within GFF614 at 681.239 kb on + strand, within GFF614 at 681.239 kb on + strand, within GFF614 at 681.240 kb on - strand, within GFF614 at 681.240 kb on - strand, within GFF614 at 681.311 kb on - strand at 681.311 kb on - strand at 681.313 kb on + strand at 681.313 kb on + strand at 681.314 kb on - strand at 681.333 kb on - strand at 681.352 kb on + strand at 681.353 kb on - strand at 681.374 kb on - strand at 681.378 kb on + strand at 681.378 kb on + strand at 681.379 kb on - strand at 681.393 kb on - strand at 681.413 kb on + strand at 681.413 kb on + strand at 681.413 kb on + strand at 681.413 kb on + strand at 681.414 kb on - strand at 681.414 kb on - strand at 681.414 kb on - strand at 681.414 kb on - strand at 681.414 kb on - strand at 681.414 kb on - strand at 681.414 kb on - strand at 681.414 kb on - strand at 681.457 kb on - strand at 681.527 kb on + strand, within GFF615 at 681.528 kb on - strand, within GFF615 at 681.537 kb on - strand, within GFF615 at 681.550 kb on + strand, within GFF615 at 681.550 kb on + strand, within GFF615 at 681.551 kb on - strand, within GFF615 at 681.551 kb on - strand, within GFF615 at 681.551 kb on - strand, within GFF615 at 681.576 kb on - strand, within GFF615 at 681.594 kb on + strand, within GFF615 at 681.594 kb on + strand, within GFF615 at 681.594 kb on + strand, within GFF615 at 681.594 kb on + strand, within GFF615 at 681.595 kb on - strand, within GFF615 at 681.651 kb on - strand, within GFF615 at 681.713 kb on - strand, within GFF615 at 681.784 kb on + strand, within GFF615 at 681.819 kb on + strand, within GFF615 at 681.819 kb on + strand, within GFF615 at 681.919 kb on - strand at 681.919 kb on - strand at 681.919 kb on - strand at 681.919 kb on - strand at 681.955 kb on - strand at 681.961 kb on + strand at 681.962 kb on - strand at 681.962 kb on - strand at 682.045 kb on + strand at 682.046 kb on - strand at 682.046 kb on - strand at 682.046 kb on - strand at 682.046 kb on - strand at 682.047 kb on + strand at 682.047 kb on + strand at 682.048 kb on - strand at 682.061 kb on + strand at 682.061 kb on + strand at 682.062 kb on - strand at 682.062 kb on - strand at 682.107 kb on - strand at 682.132 kb on - strand, within GFF616 at 682.146 kb on + strand, within GFF616 at 682.146 kb on + strand, within GFF616 at 682.146 kb on + strand, within GFF616 at 682.147 kb on - strand, within GFF616 at 682.147 kb on - strand, within GFF616 at 682.187 kb on + strand, within GFF616 at 682.188 kb on - strand, within GFF616 at 682.188 kb on - strand, within GFF616 at 682.221 kb on + strand, within GFF616 at 682.470 kb on + strand, within GFF616 at 682.470 kb on + strand, within GFF616 at 682.471 kb on - strand, within GFF616 at 682.471 kb on - strand, within GFF616 at 682.471 kb on - strand, within GFF616 at 682.482 kb on + strand, within GFF616 at 682.482 kb on + strand, within GFF616 at 682.482 kb on + strand, within GFF616 at 682.483 kb on - strand, within GFF616 at 682.483 kb on - strand, within GFF616 at 682.483 kb on - strand, within GFF616 at 682.483 kb on - strand, within GFF616 at 682.483 kb on - strand, within GFF616 at 682.521 kb on - strand, within GFF616 at 682.521 kb on - strand, within GFF616 at 682.521 kb on - strand, within GFF616 at 682.645 kb on + strand, within GFF616 at 682.646 kb on - strand, within GFF616 at 682.646 kb on - strand, within GFF616 at 682.646 kb on - strand, within GFF616 at 682.649 kb on + strand, within GFF616 at 682.649 kb on + strand, within GFF616 at 682.650 kb on - strand, within GFF616 at 682.660 kb on - strand, within GFF616 at 682.669 kb on - strand, within GFF616 at 682.673 kb on + strand, within GFF616 at 682.673 kb on + strand, within GFF616 at 682.674 kb on - strand, within GFF616 at 682.674 kb on - strand, within GFF616 at 682.674 kb on - strand, within GFF616 at 682.674 kb on - strand, within GFF616 at 682.674 kb on - strand, within GFF616 at 682.691 kb on - strand, within GFF616 at 682.691 kb on - strand, within GFF616 at 682.696 kb on + strand, within GFF616 at 682.696 kb on + strand, within GFF616 at 682.697 kb on - strand, within GFF616 at 682.697 kb on - strand, within GFF616 at 682.697 kb on - strand, within GFF616 at 682.697 kb on - strand, within GFF616 at 682.697 kb on - strand, within GFF616 at 682.697 kb on - strand, within GFF616 at 682.697 kb on - strand, within GFF616 at 682.697 kb on - strand, within GFF616 at 682.697 kb on - strand, within GFF616 at 682.697 kb on - strand, within GFF616 at 682.697 kb on - strand, within GFF616 at 682.946 kb on - strand, within GFF616 at 683.005 kb on - strand, within GFF616 at 683.005 kb on - strand, within GFF616 at 683.005 kb on - strand, within GFF616 at 683.049 kb on - strand, within GFF616 at 683.049 kb on - strand, within GFF616 at 683.049 kb on - strand, within GFF616 at 683.049 kb on - strand, within GFF616 at 683.072 kb on + strand, within GFF616 at 683.072 kb on + strand, within GFF616 at 683.073 kb on - strand, within GFF616 at 683.073 kb on - strand, within GFF616 at 683.073 kb on - strand, within GFF616 at 683.079 kb on + strand, within GFF616 at 683.079 kb on + strand, within GFF616 at 683.079 kb on + strand, within GFF616 at 683.079 kb on + strand, within GFF616 at 683.080 kb on - strand, within GFF616 at 683.080 kb on - strand, within GFF616 at 683.080 kb on - strand, within GFF616 at 683.080 kb on - strand, within GFF616 at 683.080 kb on - strand, within GFF616 at 683.080 kb on - strand, within GFF616 at 683.080 kb on - strand, within GFF616 at 683.120 kb on + strand, within GFF616 at 683.121 kb on - strand, within GFF616 at 683.221 kb on - strand, within GFF616 at 683.240 kb on + strand, within GFF616 at 683.240 kb on + strand, within GFF616 at 683.289 kb on + strand, within GFF616 at 683.289 kb on + strand, within GFF616 at 683.290 kb on - strand, within GFF616 at 683.290 kb on - strand, within GFF616 at 683.290 kb on - strand, within GFF616 at 683.290 kb on - strand, within GFF616 at 683.290 kb on - strand, within GFF616 at 683.293 kb on + strand, within GFF616 at 683.294 kb on - strand, within GFF616 at 683.294 kb on - strand, within GFF616 at 683.294 kb on - strand, within GFF616 at 683.294 kb on - strand, within GFF616 at 683.333 kb on + strand, within GFF616 at 683.334 kb on - strand, within GFF616 at 683.334 kb on - strand, within GFF616 at 683.398 kb on - strand at 683.398 kb on - strand at 683.398 kb on - strand at 683.436 kb on - strand at 683.472 kb on + strand at 683.472 kb on + strand at 683.472 kb on + strand at 683.473 kb on - strand at 683.473 kb on - strand at 683.473 kb on - strand at 683.473 kb on - strand at 683.499 kb on - strand at 683.539 kb on + strand at 683.540 kb on - strand at 683.540 kb on - strand at 683.567 kb on - strand at 683.574 kb on + strand at 683.574 kb on + strand at 683.575 kb on - strand at 683.581 kb on - strand at 683.670 kb on + strand at 683.729 kb on + strand, within GFF617 at 683.835 kb on + strand, within GFF617 at 683.835 kb on + strand, within GFF617 at 683.836 kb on - strand, within GFF617 at 683.911 kb on - strand, within GFF617 at 683.911 kb on - strand, within GFF617 at 683.946 kb on - strand, within GFF617 at 683.946 kb on - strand, within GFF617 at 683.946 kb on - strand, within GFF617 at 683.966 kb on + strand, within GFF617 at 683.966 kb on + strand, within GFF617 at 683.967 kb on - strand, within GFF617 at 683.978 kb on + strand, within GFF617 at 683.978 kb on + strand, within GFF617 at 684.010 kb on + strand, within GFF617 at 684.010 kb on + strand, within GFF617 at 684.010 kb on + strand, within GFF617 at 684.010 kb on + strand, within GFF617 at 684.011 kb on - strand, within GFF617 at 684.011 kb on - strand, within GFF617 at 684.011 kb on - strand, within GFF617 at 684.011 kb on - strand, within GFF617 at 684.044 kb on + strand, within GFF617 at 684.044 kb on + strand, within GFF617 at 684.044 kb on + strand, within GFF617 at 684.045 kb on - strand, within GFF617 at 684.068 kb on + strand, within GFF617 at 684.068 kb on + strand, within GFF617 at 684.068 kb on + strand, within GFF617 at 684.069 kb on - strand, within GFF617 at 684.069 kb on - strand, within GFF617 at 684.069 kb on - strand, within GFF617 at 684.069 kb on - strand, within GFF617 at 684.093 kb on + strand, within GFF617 at 684.093 kb on + strand, within GFF617 at 684.125 kb on + strand, within GFF617 at 684.126 kb on - strand, within GFF617 at 684.147 kb on - strand, within GFF617 at 684.147 kb on - strand, within GFF617 at 684.151 kb on + strand, within GFF617 at 684.231 kb on + strand at 684.231 kb on + strand at 684.231 kb on + strand at 684.278 kb on + strand, within GFF618 at 684.365 kb on - strand, within GFF618 at 684.468 kb on - strand, within GFF618
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 680,963 + -3.0 680,964 - -0.8 680,964 - +0.1 680,964 - +0.4 681,036 - GFF614 0.25 -0.6 681,048 + GFF614 0.28 +1.4 681,048 + GFF614 0.28 -0.2 681,048 + GFF614 0.28 -0.5 681,048 + GFF614 0.28 -0.5 681,048 + GFF614 0.28 -0.7 681,048 + GFF614 0.28 +0.5 681,049 - GFF614 0.28 -0.5 681,051 + GFF614 0.29 -2.2 681,052 - GFF614 0.29 +0.4 681,101 - GFF614 0.41 -0.0 681,101 - GFF614 0.41 -1.9 681,101 - GFF614 0.41 -0.7 681,238 - GFF614 0.74 +0.1 681,238 - GFF614 0.74 +0.1 681,239 + GFF614 0.74 -0.9 681,239 + GFF614 0.74 -0.6 681,239 + GFF614 0.74 -1.7 681,240 - GFF614 0.74 -1.5 681,240 - GFF614 0.74 +0.3 681,311 - -0.5 681,311 - -0.7 681,313 + -0.1 681,313 + -0.0 681,314 - -0.1 681,333 - +0.1 681,352 + +0.4 681,353 - -0.1 681,374 - -2.1 681,378 + -0.9 681,378 + -0.5 681,379 - +0.6 681,393 - -1.2 681,413 + +0.3 681,413 + -1.2 681,413 + +0.1 681,413 + -0.9 681,414 - -1.2 681,414 - -2.3 681,414 - +0.1 681,414 - -0.7 681,414 - +0.5 681,414 - -0.5 681,414 - +0.5 681,414 - +1.1 681,457 - -0.2 681,527 + GFF615 0.12 +0.7 681,528 - GFF615 0.12 -0.2 681,537 - GFF615 0.14 +0.7 681,550 + GFF615 0.17 -0.5 681,550 + GFF615 0.17 -1.2 681,551 - GFF615 0.17 -2.0 681,551 - GFF615 0.17 -0.2 681,551 - GFF615 0.17 -0.9 681,576 - GFF615 0.22 -0.9 681,594 + GFF615 0.26 -0.5 681,594 + GFF615 0.26 -0.7 681,594 + GFF615 0.26 +0.7 681,594 + GFF615 0.26 -1.1 681,595 - GFF615 0.26 -0.9 681,651 - GFF615 0.38 -1.1 681,713 - GFF615 0.51 -0.2 681,784 + GFF615 0.66 -1.5 681,819 + GFF615 0.73 -0.9 681,819 + GFF615 0.73 +1.1 681,919 - -0.5 681,919 - -1.2 681,919 - -1.5 681,919 - -1.1 681,955 - -1.3 681,961 + -0.5 681,962 - -1.0 681,962 - -1.5 682,045 + -1.1 682,046 - +0.1 682,046 - -0.9 682,046 - -0.2 682,046 - -0.4 682,047 + -0.6 682,047 + -1.1 682,048 - -0.1 682,061 + -0.8 682,061 + -0.7 682,062 - -1.1 682,062 - -1.8 682,107 - +0.7 682,132 - GFF616 0.11 -0.7 682,146 + GFF616 0.12 -1.3 682,146 + GFF616 0.12 +0.9 682,146 + GFF616 0.12 +0.3 682,147 - GFF616 0.12 -1.4 682,147 - GFF616 0.12 +1.1 682,187 + GFF616 0.15 -1.5 682,188 - GFF616 0.15 -1.1 682,188 - GFF616 0.15 -1.7 682,221 + GFF616 0.17 -0.7 682,470 + GFF616 0.33 +0.9 682,470 + GFF616 0.33 -3.3 682,471 - GFF616 0.33 -0.9 682,471 - GFF616 0.33 -0.9 682,471 - GFF616 0.33 -1.2 682,482 + GFF616 0.33 -0.2 682,482 + GFF616 0.33 -0.8 682,482 + GFF616 0.33 -0.9 682,483 - GFF616 0.33 -1.7 682,483 - GFF616 0.33 -1.0 682,483 - GFF616 0.33 -1.2 682,483 - GFF616 0.33 -0.7 682,483 - GFF616 0.33 -0.3 682,521 - GFF616 0.36 +0.7 682,521 - GFF616 0.36 -1.2 682,521 - GFF616 0.36 -0.3 682,645 + GFF616 0.44 +0.6 682,646 - GFF616 0.44 -0.3 682,646 - GFF616 0.44 -0.0 682,646 - GFF616 0.44 -1.9 682,649 + GFF616 0.44 -1.1 682,649 + GFF616 0.44 -0.6 682,650 - GFF616 0.44 -0.1 682,660 - GFF616 0.45 -1.1 682,669 - GFF616 0.45 +1.1 682,673 + GFF616 0.45 -1.1 682,673 + GFF616 0.45 -0.9 682,674 - GFF616 0.45 +0.7 682,674 - GFF616 0.45 -0.5 682,674 - GFF616 0.45 -1.8 682,674 - GFF616 0.45 -0.6 682,674 - GFF616 0.45 -0.2 682,691 - GFF616 0.47 -0.5 682,691 - GFF616 0.47 +0.0 682,696 + GFF616 0.47 -0.2 682,696 + GFF616 0.47 -1.1 682,697 - GFF616 0.47 -0.1 682,697 - GFF616 0.47 -0.3 682,697 - GFF616 0.47 +0.7 682,697 - GFF616 0.47 +0.4 682,697 - GFF616 0.47 +0.1 682,697 - GFF616 0.47 +0.3 682,697 - GFF616 0.47 -0.0 682,697 - GFF616 0.47 +0.1 682,697 - GFF616 0.47 +0.7 682,697 - GFF616 0.47 -0.5 682,697 - GFF616 0.47 -1.6 682,946 - GFF616 0.63 -1.2 683,005 - GFF616 0.66 -0.1 683,005 - GFF616 0.66 +0.1 683,005 - GFF616 0.66 -0.2 683,049 - GFF616 0.69 -0.9 683,049 - GFF616 0.69 -0.3 683,049 - GFF616 0.69 -0.6 683,049 - GFF616 0.69 -1.6 683,072 + GFF616 0.71 +0.9 683,072 + GFF616 0.71 -0.7 683,073 - GFF616 0.71 -0.5 683,073 - GFF616 0.71 -0.6 683,073 - GFF616 0.71 +0.1 683,079 + GFF616 0.71 -0.7 683,079 + GFF616 0.71 -0.3 683,079 + GFF616 0.71 -0.7 683,079 + GFF616 0.71 +0.1 683,080 - GFF616 0.71 -0.5 683,080 - GFF616 0.71 +0.0 683,080 - GFF616 0.71 -0.8 683,080 - GFF616 0.71 -1.9 683,080 - GFF616 0.71 -0.6 683,080 - GFF616 0.71 +0.1 683,080 - GFF616 0.71 +1.1 683,120 + GFF616 0.74 +0.1 683,121 - GFF616 0.74 -0.8 683,221 - GFF616 0.80 -0.1 683,240 + GFF616 0.81 -1.1 683,240 + GFF616 0.81 -0.2 683,289 + GFF616 0.84 -1.2 683,289 + GFF616 0.84 +0.7 683,290 - GFF616 0.84 -0.4 683,290 - GFF616 0.84 -0.4 683,290 - GFF616 0.84 -0.0 683,290 - GFF616 0.84 +0.1 683,290 - GFF616 0.84 -0.5 683,293 + GFF616 0.84 -1.5 683,294 - GFF616 0.84 -0.9 683,294 - GFF616 0.84 -0.2 683,294 - GFF616 0.84 +0.4 683,294 - GFF616 0.84 +0.4 683,333 + GFF616 0.87 +0.8 683,334 - GFF616 0.87 -0.7 683,334 - GFF616 0.87 +0.5 683,398 - -0.0 683,398 - -0.3 683,398 - -0.6 683,436 - -0.3 683,472 + -0.7 683,472 + -0.2 683,472 + +0.1 683,473 - -0.7 683,473 - -1.1 683,473 - +0.7 683,473 - -1.7 683,499 - -0.1 683,539 + +0.1 683,540 - -0.1 683,540 - -0.4 683,567 - +0.9 683,574 + -0.5 683,574 + -1.2 683,575 - -0.3 683,581 - -1.7 683,670 + -0.9 683,729 + GFF617 0.11 +0.8 683,835 + GFF617 0.30 -0.2 683,835 + GFF617 0.30 -1.2 683,836 - GFF617 0.30 -0.5 683,911 - GFF617 0.44 +0.2 683,911 - GFF617 0.44 -0.7 683,946 - GFF617 0.50 -1.6 683,946 - GFF617 0.50 +0.1 683,946 - GFF617 0.50 -0.5 683,966 + GFF617 0.54 -0.9 683,966 + GFF617 0.54 +0.5 683,967 - GFF617 0.54 -0.2 683,978 + GFF617 0.56 +0.1 683,978 + GFF617 0.56 -0.8 684,010 + GFF617 0.62 -0.9 684,010 + GFF617 0.62 -0.2 684,010 + GFF617 0.62 -0.2 684,010 + GFF617 0.62 -0.9 684,011 - GFF617 0.62 -1.2 684,011 - GFF617 0.62 -0.5 684,011 - GFF617 0.62 -1.2 684,011 - GFF617 0.62 +0.1 684,044 + GFF617 0.68 +1.0 684,044 + GFF617 0.68 +0.4 684,044 + GFF617 0.68 +1.1 684,045 - GFF617 0.68 +0.0 684,068 + GFF617 0.72 -1.0 684,068 + GFF617 0.72 -0.9 684,068 + GFF617 0.72 +0.8 684,069 - GFF617 0.72 +0.4 684,069 - GFF617 0.72 -0.9 684,069 - GFF617 0.72 -1.7 684,069 - GFF617 0.72 -0.4 684,093 + GFF617 0.77 +0.1 684,093 + GFF617 0.77 -0.2 684,125 + GFF617 0.83 -0.0 684,126 - GFF617 0.83 +0.5 684,147 - GFF617 0.87 +0.4 684,147 - GFF617 0.87 +0.3 684,151 + GFF617 0.87 +1.1 684,231 + +0.1 684,231 + +0.5 684,231 + -1.1 684,278 + GFF618 0.11 -0.4 684,365 - GFF618 0.27 -0.8 684,468 - GFF618 0.46 -1.5
Or see this region's nucleotide sequence