Strain Fitness in Methylophilus sp. DMC18 around GFF558

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF556 and GFF557 are separated by 9 nucleotidesGFF557 and GFF558 are separated by 22 nucleotidesGFF558 and GFF559 are separated by 53 nucleotidesGFF559 and GFF560 are separated by 44 nucleotides GFF556 - Flagellar P-ring protein, at 612,400 to 613,563 GFF556 GFF557 - Flagellar L-ring protein, at 613,573 to 614,241 GFF557 GFF558 - Flagellar basal-body rod protein FlgG, at 614,264 to 615,046 GFF558 GFF559 - Flagellar basal-body rod protein FlgF, at 615,100 to 615,843 GFF559 GFF560 - Flagellar hook protein FlgE, at 615,888 to 617,126 GFF560 Position (kb) 614 615 616Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 613.309 kb on - strand, within GFF556at 613.309 kb on - strand, within GFF556at 613.309 kb on - strand, within GFF556at 613.333 kb on + strand, within GFF556at 613.333 kb on + strand, within GFF556at 613.334 kb on - strand, within GFF556at 613.334 kb on - strand, within GFF556at 613.334 kb on - strand, within GFF556at 613.334 kb on - strand, within GFF556at 613.385 kb on - strand, within GFF556at 613.477 kb on + strandat 613.477 kb on + strandat 613.478 kb on - strandat 613.478 kb on - strandat 613.512 kb on - strandat 613.574 kb on + strandat 613.574 kb on + strandat 613.575 kb on - strandat 613.590 kb on + strandat 613.591 kb on - strandat 613.591 kb on - strandat 613.660 kb on - strand, within GFF557at 613.704 kb on + strand, within GFF557at 613.704 kb on + strand, within GFF557at 613.705 kb on - strand, within GFF557at 613.705 kb on - strand, within GFF557at 613.742 kb on + strand, within GFF557at 613.742 kb on + strand, within GFF557at 613.742 kb on + strand, within GFF557at 613.742 kb on + strand, within GFF557at 613.742 kb on + strand, within GFF557at 613.742 kb on + strand, within GFF557at 613.743 kb on - strand, within GFF557at 613.743 kb on - strand, within GFF557at 613.743 kb on - strand, within GFF557at 613.743 kb on - strand, within GFF557at 613.743 kb on - strand, within GFF557at 613.743 kb on - strand, within GFF557at 613.743 kb on - strand, within GFF557at 613.743 kb on - strand, within GFF557at 613.743 kb on - strand, within GFF557at 613.743 kb on - strand, within GFF557at 613.793 kb on + strand, within GFF557at 613.794 kb on - strand, within GFF557at 613.950 kb on + strand, within GFF557at 614.011 kb on - strand, within GFF557at 614.039 kb on + strand, within GFF557at 614.039 kb on + strand, within GFF557at 614.040 kb on - strand, within GFF557at 614.160 kb on + strand, within GFF557at 614.189 kb on - strandat 614.212 kb on + strandat 614.213 kb on - strandat 614.213 kb on - strandat 614.216 kb on - strandat 614.232 kb on + strandat 614.233 kb on - strandat 614.233 kb on - strandat 614.233 kb on - strandat 614.266 kb on - strandat 614.317 kb on + strandat 614.318 kb on - strandat 614.318 kb on - strandat 614.394 kb on + strand, within GFF558at 614.394 kb on + strand, within GFF558at 614.422 kb on + strand, within GFF558at 614.472 kb on + strand, within GFF558at 614.473 kb on - strand, within GFF558at 614.473 kb on - strand, within GFF558at 614.473 kb on - strand, within GFF558at 614.512 kb on + strand, within GFF558at 614.513 kb on - strand, within GFF558at 614.594 kb on + strand, within GFF558at 614.639 kb on + strand, within GFF558at 614.640 kb on - strand, within GFF558at 614.640 kb on - strand, within GFF558at 614.640 kb on - strand, within GFF558at 614.706 kb on + strand, within GFF558at 614.707 kb on - strand, within GFF558at 614.707 kb on - strand, within GFF558at 614.810 kb on - strand, within GFF558at 614.910 kb on + strand, within GFF558at 614.911 kb on - strand, within GFF558at 614.928 kb on - strand, within GFF558at 614.928 kb on - strand, within GFF558at 614.928 kb on - strand, within GFF558at 614.957 kb on - strand, within GFF558at 615.033 kb on - strandat 615.041 kb on + strandat 615.042 kb on - strandat 615.042 kb on - strandat 615.078 kb on + strandat 615.078 kb on + strandat 615.079 kb on - strandat 615.079 kb on - strandat 615.079 kb on - strandat 615.089 kb on + strandat 615.089 kb on + strandat 615.090 kb on - strandat 615.102 kb on - strandat 615.231 kb on + strand, within GFF559at 615.231 kb on + strand, within GFF559at 615.232 kb on - strand, within GFF559at 615.235 kb on - strand, within GFF559at 615.235 kb on - strand, within GFF559at 615.235 kb on - strand, within GFF559at 615.235 kb on - strand, within GFF559at 615.372 kb on + strand, within GFF559at 615.373 kb on - strand, within GFF559at 615.505 kb on + strand, within GFF559at 615.506 kb on - strand, within GFF559at 615.506 kb on - strand, within GFF559at 615.506 kb on - strand, within GFF559at 615.546 kb on + strand, within GFF559at 615.547 kb on - strand, within GFF559at 615.547 kb on - strand, within GFF559at 615.547 kb on - strand, within GFF559at 615.547 kb on - strand, within GFF559at 615.548 kb on + strand, within GFF559at 615.549 kb on - strand, within GFF559at 615.549 kb on - strand, within GFF559at 615.648 kb on - strand, within GFF559at 615.648 kb on - strand, within GFF559at 615.731 kb on - strand, within GFF559at 615.731 kb on - strand, within GFF559at 615.801 kb on + strandat 615.802 kb on - strandat 615.825 kb on + strandat 615.828 kb on - strandat 615.889 kb on + strandat 615.972 kb on - strandat 616.035 kb on + strand, within GFF560

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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613,309 - GFF556 0.78 +0.1
613,309 - GFF556 0.78 -0.2
613,309 - GFF556 0.78 -1.1
613,333 + GFF556 0.80 +0.5
613,333 + GFF556 0.80 +0.1
613,334 - GFF556 0.80 -0.5
613,334 - GFF556 0.80 -0.2
613,334 - GFF556 0.80 +1.1
613,334 - GFF556 0.80 -0.5
613,385 - GFF556 0.85 -0.8
613,477 + -0.2
613,477 + -0.2
613,478 - -0.5
613,478 - +0.8
613,512 - -1.2
613,574 + -0.3
613,574 + -2.3
613,575 - -1.1
613,590 + -0.8
613,591 - -1.5
613,591 - -1.1
613,660 - GFF557 0.13 +0.0
613,704 + GFF557 0.20 +0.3
613,704 + GFF557 0.20 -1.8
613,705 - GFF557 0.20 -0.3
613,705 - GFF557 0.20 -1.9
613,742 + GFF557 0.25 -0.6
613,742 + GFF557 0.25 -0.2
613,742 + GFF557 0.25 -0.3
613,742 + GFF557 0.25 +0.8
613,742 + GFF557 0.25 +0.3
613,742 + GFF557 0.25 -1.6
613,743 - GFF557 0.25 -0.2
613,743 - GFF557 0.25 -0.4
613,743 - GFF557 0.25 -0.7
613,743 - GFF557 0.25 -0.0
613,743 - GFF557 0.25 -0.1
613,743 - GFF557 0.25 -0.2
613,743 - GFF557 0.25 +1.3
613,743 - GFF557 0.25 -0.7
613,743 - GFF557 0.25 -0.5
613,743 - GFF557 0.25 +0.4
613,793 + GFF557 0.33 -0.7
613,794 - GFF557 0.33 +1.9
613,950 + GFF557 0.56 +0.1
614,011 - GFF557 0.65 -0.1
614,039 + GFF557 0.70 -0.3
614,039 + GFF557 0.70 -1.5
614,040 - GFF557 0.70 -1.8
614,160 + GFF557 0.88 +0.0
614,189 - -0.3
614,212 + +0.1
614,213 - +0.7
614,213 - +0.7
614,216 - -0.6
614,232 + -0.2
614,233 - +0.0
614,233 - -0.2
614,233 - -0.2
614,266 - -0.8
614,317 + -0.5
614,318 - -1.5
614,318 - -1.3
614,394 + GFF558 0.17 -1.2
614,394 + GFF558 0.17 -0.6
614,422 + GFF558 0.20 +0.5
614,472 + GFF558 0.27 -0.3
614,473 - GFF558 0.27 -0.1
614,473 - GFF558 0.27 +0.4
614,473 - GFF558 0.27 -1.2
614,512 + GFF558 0.32 +0.4
614,513 - GFF558 0.32 -0.4
614,594 + GFF558 0.42 -3.1
614,639 + GFF558 0.48 +0.8
614,640 - GFF558 0.48 -1.7
614,640 - GFF558 0.48 -1.1
614,640 - GFF558 0.48 -1.4
614,706 + GFF558 0.56 -0.7
614,707 - GFF558 0.57 +0.1
614,707 - GFF558 0.57 +0.6
614,810 - GFF558 0.70 +0.1
614,910 + GFF558 0.83 -0.8
614,911 - GFF558 0.83 -0.9
614,928 - GFF558 0.85 +0.5
614,928 - GFF558 0.85 -0.7
614,928 - GFF558 0.85 +0.0
614,957 - GFF558 0.89 -0.2
615,033 - +0.1
615,041 + -0.1
615,042 - -0.9
615,042 - -0.5
615,078 + +1.7
615,078 + -1.0
615,079 - -1.5
615,079 - -1.6
615,079 - -0.7
615,089 + +0.3
615,089 + +0.7
615,090 - -1.4
615,102 - +0.5
615,231 + GFF559 0.18 +1.1
615,231 + GFF559 0.18 -0.7
615,232 - GFF559 0.18 +0.3
615,235 - GFF559 0.18 +0.1
615,235 - GFF559 0.18 -0.9
615,235 - GFF559 0.18 +0.1
615,235 - GFF559 0.18 +0.1
615,372 + GFF559 0.37 +0.7
615,373 - GFF559 0.37 -0.8
615,505 + GFF559 0.54 -0.8
615,506 - GFF559 0.55 +0.1
615,506 - GFF559 0.55 +0.8
615,506 - GFF559 0.55 -0.5
615,546 + GFF559 0.60 -0.2
615,547 - GFF559 0.60 +0.3
615,547 - GFF559 0.60 -1.1
615,547 - GFF559 0.60 -1.9
615,547 - GFF559 0.60 -1.2
615,548 + GFF559 0.60 -0.5
615,549 - GFF559 0.60 -1.6
615,549 - GFF559 0.60 -0.9
615,648 - GFF559 0.74 -0.4
615,648 - GFF559 0.74 -0.1
615,731 - GFF559 0.85 +0.5
615,731 - GFF559 0.85 -0.6
615,801 + -0.9
615,802 - -1.0
615,825 + +0.0
615,828 - +0.7
615,889 + -0.9
615,972 - +0.3
616,035 + GFF560 0.12 -0.9

Or see this region's nucleotide sequence