Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF383 and GFF384 are separated by 47 nucleotides GFF384 and GFF385 are separated by 171 nucleotides GFF385 and GFF386 are separated by 18 nucleotides
GFF383 - putative ABC transporter ATP-binding protein YheS, at 424,487 to 426,388
GFF383
GFF384 - hypothetical protein, at 426,436 to 427,008
GFF384
GFF385 - Transcriptional regulatory protein CpxR, at 427,180 to 427,860
GFF385
GFF386 - Adaptive-response sensory-kinase SasA, at 427,879 to 429,009
GFF386
Position (kb) 426
427
428 Strain fitness (log2 ratio) -2
-1
0
1
2 at 425.456 kb on + strand, within GFF383 at 425.528 kb on - strand, within GFF383 at 425.543 kb on - strand, within GFF383 at 425.609 kb on - strand, within GFF383 at 425.627 kb on + strand, within GFF383 at 425.902 kb on + strand, within GFF383 at 425.902 kb on + strand, within GFF383 at 425.903 kb on - strand, within GFF383 at 425.919 kb on - strand, within GFF383 at 425.986 kb on - strand, within GFF383 at 426.035 kb on + strand, within GFF383 at 426.035 kb on + strand, within GFF383 at 426.048 kb on + strand, within GFF383 at 426.110 kb on + strand, within GFF383 at 426.226 kb on - strand at 426.250 kb on + strand at 426.250 kb on + strand at 426.250 kb on + strand at 426.254 kb on + strand at 426.254 kb on + strand at 426.254 kb on + strand at 426.254 kb on + strand at 426.254 kb on + strand at 426.254 kb on + strand at 426.255 kb on - strand at 426.255 kb on - strand at 426.255 kb on - strand at 426.255 kb on - strand at 426.330 kb on + strand at 426.331 kb on - strand at 426.351 kb on + strand at 426.351 kb on + strand at 426.382 kb on - strand at 426.386 kb on + strand at 426.387 kb on - strand at 426.395 kb on + strand at 426.395 kb on + strand at 426.396 kb on - strand at 426.404 kb on + strand at 426.404 kb on + strand at 426.404 kb on + strand at 426.404 kb on + strand at 426.404 kb on + strand at 426.404 kb on + strand at 426.404 kb on + strand at 426.404 kb on + strand at 426.404 kb on + strand at 426.404 kb on + strand at 426.404 kb on + strand at 426.404 kb on + strand at 426.404 kb on + strand at 426.404 kb on + strand at 426.404 kb on + strand at 426.404 kb on + strand at 426.404 kb on + strand at 426.405 kb on - strand at 426.405 kb on - strand at 426.405 kb on - strand at 426.405 kb on - strand at 426.405 kb on - strand at 426.405 kb on - strand at 426.405 kb on - strand at 426.405 kb on - strand at 426.406 kb on + strand at 426.406 kb on + strand at 426.406 kb on + strand at 426.406 kb on + strand at 426.406 kb on + strand at 426.406 kb on + strand at 426.406 kb on + strand at 426.406 kb on + strand at 426.406 kb on + strand at 426.407 kb on - strand at 426.407 kb on - strand at 426.407 kb on - strand at 426.407 kb on - strand at 426.407 kb on - strand at 426.407 kb on - strand at 426.407 kb on - strand at 426.407 kb on - strand at 426.407 kb on - strand at 426.407 kb on - strand at 426.407 kb on - strand at 426.408 kb on + strand at 426.408 kb on + strand at 426.408 kb on + strand at 426.408 kb on + strand at 426.408 kb on + strand at 426.408 kb on + strand at 426.408 kb on + strand at 426.409 kb on - strand at 426.409 kb on - strand at 426.409 kb on - strand at 426.410 kb on + strand at 426.410 kb on + strand at 426.410 kb on + strand at 426.410 kb on + strand at 426.411 kb on - strand at 426.431 kb on + strand at 426.431 kb on + strand at 426.431 kb on + strand at 426.432 kb on - strand at 426.435 kb on + strand at 426.435 kb on + strand at 426.436 kb on - strand at 426.448 kb on + strand at 426.448 kb on + strand at 426.448 kb on + strand at 426.448 kb on + strand at 426.449 kb on - strand at 426.449 kb on - strand at 426.470 kb on + strand at 426.536 kb on - strand, within GFF384 at 426.568 kb on + strand, within GFF384 at 426.569 kb on - strand, within GFF384 at 426.599 kb on + strand, within GFF384 at 426.599 kb on + strand, within GFF384 at 426.600 kb on - strand, within GFF384 at 426.600 kb on - strand, within GFF384 at 426.648 kb on + strand, within GFF384 at 426.649 kb on - strand, within GFF384 at 426.649 kb on - strand, within GFF384 at 426.649 kb on - strand, within GFF384 at 426.661 kb on + strand, within GFF384 at 426.661 kb on + strand, within GFF384 at 426.661 kb on + strand, within GFF384 at 426.661 kb on + strand, within GFF384 at 426.662 kb on - strand, within GFF384 at 426.662 kb on - strand, within GFF384 at 426.662 kb on - strand, within GFF384 at 426.662 kb on - strand, within GFF384 at 426.685 kb on + strand, within GFF384 at 426.686 kb on - strand, within GFF384 at 426.823 kb on - strand, within GFF384 at 426.885 kb on + strand, within GFF384 at 426.886 kb on - strand, within GFF384 at 426.901 kb on + strand, within GFF384 at 426.950 kb on + strand, within GFF384 at 426.950 kb on + strand, within GFF384 at 426.950 kb on + strand, within GFF384 at 426.950 kb on + strand, within GFF384 at 426.950 kb on + strand, within GFF384 at 426.950 kb on + strand, within GFF384 at 426.950 kb on + strand, within GFF384 at 426.950 kb on + strand, within GFF384 at 426.950 kb on + strand, within GFF384 at 426.950 kb on + strand, within GFF384 at 426.950 kb on + strand, within GFF384 at 426.950 kb on + strand, within GFF384 at 426.950 kb on + strand, within GFF384 at 426.950 kb on + strand, within GFF384 at 426.950 kb on + strand, within GFF384 at 426.951 kb on - strand at 426.951 kb on - strand at 426.951 kb on - strand at 426.951 kb on - strand at 426.951 kb on - strand at 426.951 kb on - strand at 426.951 kb on - strand at 427.024 kb on + strand at 427.025 kb on - strand at 427.025 kb on - strand at 427.025 kb on - strand at 427.036 kb on - strand at 427.036 kb on - strand at 427.036 kb on - strand at 427.040 kb on + strand at 427.095 kb on + strand at 427.138 kb on + strand at 427.138 kb on + strand at 427.138 kb on + strand at 427.138 kb on + strand at 427.143 kb on + strand at 427.297 kb on + strand, within GFF385 at 427.297 kb on + strand, within GFF385 at 427.472 kb on - strand, within GFF385 at 427.741 kb on + strand, within GFF385 at 427.858 kb on + strand at 427.858 kb on + strand at 427.866 kb on + strand at 427.939 kb on - strand at 427.941 kb on + strand at 427.942 kb on - strand at 427.942 kb on - strand at 428.008 kb on - strand, within GFF386
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 425,456 + GFF383 0.51 +0.3 425,528 - GFF383 0.55 -1.3 425,543 - GFF383 0.56 -0.2 425,609 - GFF383 0.59 -0.9 425,627 + GFF383 0.60 -0.0 425,902 + GFF383 0.74 -1.3 425,902 + GFF383 0.74 +0.1 425,903 - GFF383 0.74 -0.5 425,919 - GFF383 0.75 -0.2 425,986 - GFF383 0.79 -1.3 426,035 + GFF383 0.81 -0.1 426,035 + GFF383 0.81 +1.9 426,048 + GFF383 0.82 -0.9 426,110 + GFF383 0.85 -0.7 426,226 - +0.3 426,250 + -0.5 426,250 + -1.3 426,250 + -0.7 426,254 + -0.8 426,254 + -0.3 426,254 + -0.3 426,254 + -0.9 426,254 + -0.7 426,254 + -0.3 426,255 - +0.1 426,255 - -1.1 426,255 - +0.1 426,255 - -0.4 426,330 + -1.0 426,331 - -0.9 426,351 + -0.9 426,351 + -0.9 426,382 - -1.3 426,386 + +0.5 426,387 - +0.4 426,395 + -1.1 426,395 + -1.1 426,396 - -0.7 426,404 + -1.3 426,404 + -0.9 426,404 + +0.1 426,404 + -0.7 426,404 + +0.4 426,404 + -0.4 426,404 + +0.2 426,404 + -1.3 426,404 + -0.3 426,404 + -0.4 426,404 + +0.3 426,404 + +0.1 426,404 + +0.8 426,404 + -0.9 426,404 + +0.2 426,404 + -0.3 426,404 + +0.1 426,405 - -1.2 426,405 - +0.7 426,405 - -0.5 426,405 - -0.0 426,405 - +0.1 426,405 - -0.9 426,405 - +0.3 426,405 - -0.9 426,406 + -2.3 426,406 + +0.1 426,406 + -0.7 426,406 + -0.2 426,406 + +0.9 426,406 + -1.1 426,406 + -1.0 426,406 + -0.5 426,406 + -1.1 426,407 - +0.2 426,407 - -0.5 426,407 - -1.7 426,407 - -1.5 426,407 - +1.1 426,407 - -1.9 426,407 - -0.3 426,407 - +0.6 426,407 - +0.3 426,407 - +0.8 426,407 - +0.9 426,408 + -1.3 426,408 + -0.4 426,408 + +0.7 426,408 + +0.1 426,408 + +0.5 426,408 + +0.5 426,408 + -0.9 426,409 - -0.4 426,409 - -0.7 426,409 - +0.1 426,410 + -0.2 426,410 + -0.7 426,410 + -0.7 426,410 + -0.5 426,411 - -0.5 426,431 + -1.5 426,431 + -1.3 426,431 + +1.1 426,432 - -1.6 426,435 + -1.3 426,435 + -0.9 426,436 - -2.4 426,448 + -0.2 426,448 + -0.1 426,448 + -0.7 426,448 + -1.5 426,449 - -0.6 426,449 - -0.5 426,470 + +0.8 426,536 - GFF384 0.17 -0.9 426,568 + GFF384 0.23 -0.4 426,569 - GFF384 0.23 +0.4 426,599 + GFF384 0.28 +0.1 426,599 + GFF384 0.28 +0.3 426,600 - GFF384 0.29 -1.7 426,600 - GFF384 0.29 +1.1 426,648 + GFF384 0.37 -2.4 426,649 - GFF384 0.37 +0.3 426,649 - GFF384 0.37 -0.5 426,649 - GFF384 0.37 +0.8 426,661 + GFF384 0.39 -1.2 426,661 + GFF384 0.39 -0.3 426,661 + GFF384 0.39 -1.3 426,661 + GFF384 0.39 +0.6 426,662 - GFF384 0.39 -1.1 426,662 - GFF384 0.39 -1.3 426,662 - GFF384 0.39 +0.3 426,662 - GFF384 0.39 -0.4 426,685 + GFF384 0.43 -0.6 426,686 - GFF384 0.44 -1.7 426,823 - GFF384 0.68 -0.5 426,885 + GFF384 0.78 +0.3 426,886 - GFF384 0.79 -1.3 426,901 + GFF384 0.81 +1.1 426,950 + GFF384 0.90 -0.5 426,950 + GFF384 0.90 -1.5 426,950 + GFF384 0.90 -0.3 426,950 + GFF384 0.90 -0.8 426,950 + GFF384 0.90 -0.9 426,950 + GFF384 0.90 -0.9 426,950 + GFF384 0.90 -2.1 426,950 + GFF384 0.90 -0.2 426,950 + GFF384 0.90 -0.7 426,950 + GFF384 0.90 -1.4 426,950 + GFF384 0.90 -1.3 426,950 + GFF384 0.90 +0.1 426,950 + GFF384 0.90 -0.8 426,950 + GFF384 0.90 -1.5 426,950 + GFF384 0.90 +0.1 426,951 - -0.9 426,951 - -0.4 426,951 - -1.3 426,951 - +0.1 426,951 - +0.5 426,951 - -1.0 426,951 - -1.3 427,024 + +1.3 427,025 - +1.1 427,025 - -1.7 427,025 - -0.1 427,036 - -0.2 427,036 - -1.5 427,036 - -0.4 427,040 + -1.1 427,095 + +1.1 427,138 + +0.1 427,138 + +0.1 427,138 + -0.4 427,138 + -0.9 427,143 + +0.3 427,297 + GFF385 0.17 -0.9 427,297 + GFF385 0.17 +0.1 427,472 - GFF385 0.43 -0.7 427,741 + GFF385 0.82 -0.9 427,858 + -0.3 427,858 + -0.2 427,866 + +0.8 427,939 - -0.9 427,941 + +0.1 427,942 - -0.9 427,942 - -1.5 428,008 - GFF386 0.11 -1.5
Or see this region's nucleotide sequence