Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF365 and GFF366 are separated by 122 nucleotides GFF366 and GFF367 are separated by 53 nucleotides GFF367 and GFF368 are separated by 162 nucleotides
GFF365 - hypothetical protein, at 405,650 to 408,187
GFF365
GFF366 - hypothetical protein, at 408,310 to 408,402
GFF366
GFF367 - Transcription elongation factor GreB, at 408,456 to 408,938
GFF367
GFF368 - hypothetical protein, at 409,101 to 409,364
GFF368
Position (kb) 408
409 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 407.357 kb on + strand, within GFF365 at 407.503 kb on + strand, within GFF365 at 407.503 kb on + strand, within GFF365 at 407.503 kb on + strand, within GFF365 at 407.521 kb on + strand, within GFF365 at 407.603 kb on + strand, within GFF365 at 407.603 kb on + strand, within GFF365 at 407.615 kb on - strand, within GFF365 at 407.693 kb on - strand, within GFF365 at 407.693 kb on - strand, within GFF365 at 407.727 kb on - strand, within GFF365 at 407.820 kb on + strand, within GFF365 at 407.820 kb on + strand, within GFF365 at 407.842 kb on + strand, within GFF365 at 407.842 kb on + strand, within GFF365 at 407.892 kb on + strand, within GFF365 at 407.893 kb on - strand, within GFF365 at 407.893 kb on - strand, within GFF365 at 407.893 kb on - strand, within GFF365 at 407.893 kb on - strand, within GFF365 at 407.968 kb on - strand at 407.984 kb on + strand at 408.042 kb on - strand at 408.073 kb on + strand at 408.073 kb on + strand at 408.079 kb on + strand at 408.080 kb on - strand at 408.080 kb on - strand at 408.115 kb on + strand at 408.115 kb on + strand at 408.116 kb on - strand at 408.116 kb on - strand at 408.135 kb on + strand at 408.135 kb on + strand at 408.135 kb on + strand at 408.140 kb on + strand at 408.141 kb on - strand at 408.264 kb on + strand at 408.264 kb on + strand at 408.265 kb on - strand at 408.265 kb on - strand at 408.265 kb on - strand at 408.268 kb on + strand at 408.268 kb on + strand at 408.269 kb on - strand at 408.269 kb on - strand at 408.367 kb on - strand, within GFF366 at 408.382 kb on + strand, within GFF366 at 408.382 kb on + strand, within GFF366 at 408.382 kb on + strand, within GFF366 at 408.382 kb on + strand, within GFF366 at 408.383 kb on - strand, within GFF366 at 408.383 kb on - strand, within GFF366 at 408.383 kb on - strand, within GFF366 at 408.383 kb on - strand, within GFF366 at 408.383 kb on - strand, within GFF366 at 408.383 kb on - strand, within GFF366 at 408.387 kb on + strand, within GFF366 at 408.387 kb on + strand, within GFF366 at 408.388 kb on - strand, within GFF366 at 408.388 kb on - strand, within GFF366 at 408.474 kb on + strand at 408.474 kb on + strand at 408.475 kb on - strand at 408.476 kb on + strand at 408.476 kb on + strand at 408.476 kb on + strand at 408.477 kb on - strand at 408.479 kb on + strand at 408.479 kb on + strand at 408.480 kb on - strand at 408.528 kb on - strand, within GFF367 at 408.603 kb on + strand, within GFF367 at 408.603 kb on + strand, within GFF367 at 408.603 kb on + strand, within GFF367 at 408.603 kb on + strand, within GFF367 at 408.603 kb on + strand, within GFF367 at 408.604 kb on - strand, within GFF367 at 408.604 kb on - strand, within GFF367 at 408.604 kb on - strand, within GFF367 at 408.687 kb on + strand, within GFF367 at 408.688 kb on - strand, within GFF367 at 408.775 kb on + strand, within GFF367 at 408.816 kb on + strand, within GFF367 at 408.818 kb on + strand, within GFF367 at 408.819 kb on - strand, within GFF367 at 408.819 kb on - strand, within GFF367 at 408.877 kb on + strand, within GFF367 at 408.877 kb on + strand, within GFF367 at 408.877 kb on + strand, within GFF367 at 408.877 kb on + strand, within GFF367 at 408.878 kb on - strand, within GFF367 at 408.917 kb on + strand at 408.918 kb on - strand at 408.978 kb on + strand at 408.978 kb on + strand at 408.978 kb on + strand at 408.978 kb on + strand at 408.978 kb on + strand at 408.978 kb on + strand at 408.979 kb on - strand at 408.979 kb on - strand at 408.979 kb on - strand at 409.003 kb on + strand at 409.004 kb on - strand at 409.025 kb on + strand at 409.026 kb on - strand at 409.026 kb on - strand at 409.026 kb on - strand at 409.037 kb on + strand at 409.037 kb on + strand at 409.037 kb on + strand at 409.037 kb on + strand at 409.215 kb on - strand, within GFF368
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 407,357 + GFF365 0.67 -0.4 407,503 + GFF365 0.73 -1.5 407,503 + GFF365 0.73 +0.1 407,503 + GFF365 0.73 -1.4 407,521 + GFF365 0.74 -0.2 407,603 + GFF365 0.77 -0.2 407,603 + GFF365 0.77 +0.0 407,615 - GFF365 0.77 -1.4 407,693 - GFF365 0.80 -0.5 407,693 - GFF365 0.80 -1.2 407,727 - GFF365 0.82 +0.0 407,820 + GFF365 0.86 -1.4 407,820 + GFF365 0.86 -1.0 407,842 + GFF365 0.86 +1.4 407,842 + GFF365 0.86 -0.5 407,892 + GFF365 0.88 +1.9 407,893 - GFF365 0.88 +0.5 407,893 - GFF365 0.88 -1.1 407,893 - GFF365 0.88 -1.1 407,893 - GFF365 0.88 -0.5 407,968 - +0.6 407,984 + -0.0 408,042 - -1.3 408,073 + +0.3 408,073 + +0.4 408,079 + -1.5 408,080 - -0.7 408,080 - -0.9 408,115 + +0.8 408,115 + +0.2 408,116 - -0.8 408,116 - -0.5 408,135 + -1.1 408,135 + -0.3 408,135 + -0.5 408,140 + +0.1 408,141 - -0.9 408,264 + +0.4 408,264 + -2.2 408,265 - -0.7 408,265 - -0.5 408,265 - -1.3 408,268 + -0.9 408,268 + -0.1 408,269 - -0.3 408,269 - -0.4 408,367 - GFF366 0.61 +1.4 408,382 + GFF366 0.77 -1.3 408,382 + GFF366 0.77 -0.0 408,382 + GFF366 0.77 -0.7 408,382 + GFF366 0.77 -1.8 408,383 - GFF366 0.78 +0.1 408,383 - GFF366 0.78 -0.9 408,383 - GFF366 0.78 -1.6 408,383 - GFF366 0.78 -1.5 408,383 - GFF366 0.78 -0.8 408,383 - GFF366 0.78 -0.2 408,387 + GFF366 0.83 -1.4 408,387 + GFF366 0.83 -1.5 408,388 - GFF366 0.84 -0.5 408,388 - GFF366 0.84 -0.4 408,474 + -0.5 408,474 + -0.7 408,475 - -0.1 408,476 + +0.7 408,476 + +0.5 408,476 + -0.3 408,477 - +0.1 408,479 + -0.7 408,479 + -1.2 408,480 - +0.8 408,528 - GFF367 0.15 -0.5 408,603 + GFF367 0.30 -0.2 408,603 + GFF367 0.30 -0.2 408,603 + GFF367 0.30 +0.1 408,603 + GFF367 0.30 -0.1 408,603 + GFF367 0.30 -0.2 408,604 - GFF367 0.31 -0.2 408,604 - GFF367 0.31 -0.3 408,604 - GFF367 0.31 -0.7 408,687 + GFF367 0.48 -1.9 408,688 - GFF367 0.48 -0.1 408,775 + GFF367 0.66 -0.5 408,816 + GFF367 0.75 -1.6 408,818 + GFF367 0.75 -1.5 408,819 - GFF367 0.75 -0.5 408,819 - GFF367 0.75 -1.1 408,877 + GFF367 0.87 +0.1 408,877 + GFF367 0.87 -0.7 408,877 + GFF367 0.87 -0.5 408,877 + GFF367 0.87 +0.3 408,878 - GFF367 0.87 -0.3 408,917 + -1.1 408,918 - -0.9 408,978 + -0.5 408,978 + +1.1 408,978 + +0.3 408,978 + +0.1 408,978 + +0.1 408,978 + -0.3 408,979 - -0.3 408,979 - -1.2 408,979 - -1.1 409,003 + +0.1 409,004 - -1.3 409,025 + -0.5 409,026 - +1.1 409,026 - -2.9 409,026 - -0.1 409,037 + -1.0 409,037 + +0.3 409,037 + -1.1 409,037 + -1.1 409,215 - GFF368 0.43 -0.7
Or see this region's nucleotide sequence