Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2653 and GFF2654 are separated by 65 nucleotides GFF2654 and GFF2655 overlap by 8 nucleotides
GFF2653 - Sodium-potassium/proton antiporter ChaA, at 46,318 to 47,412
GFF2653
GFF2654 - Thiosulfate sulfurtransferase GlpE, at 47,478 to 48,419
GFF2654
GFF2655 - Cation efflux system protein CusA, at 48,412 to 51,606
GFF2655
Position (kb) 47
48
49 Strain fitness (log2 ratio) -2
-1
0
1 at 46.481 kb on + strand, within GFF2653 at 46.481 kb on + strand, within GFF2653 at 46.482 kb on - strand, within GFF2653 at 46.498 kb on + strand, within GFF2653 at 46.498 kb on + strand, within GFF2653 at 46.498 kb on + strand, within GFF2653 at 46.498 kb on + strand, within GFF2653 at 46.499 kb on - strand, within GFF2653 at 46.499 kb on - strand, within GFF2653 at 46.525 kb on + strand, within GFF2653 at 46.575 kb on + strand, within GFF2653 at 46.575 kb on + strand, within GFF2653 at 46.575 kb on + strand, within GFF2653 at 46.575 kb on + strand, within GFF2653 at 46.576 kb on - strand, within GFF2653 at 46.596 kb on + strand, within GFF2653 at 46.596 kb on + strand, within GFF2653 at 46.596 kb on + strand, within GFF2653 at 46.596 kb on + strand, within GFF2653 at 46.596 kb on + strand, within GFF2653 at 46.596 kb on + strand, within GFF2653 at 46.596 kb on + strand, within GFF2653 at 46.596 kb on + strand, within GFF2653 at 46.597 kb on - strand, within GFF2653 at 46.597 kb on - strand, within GFF2653 at 46.597 kb on - strand, within GFF2653 at 46.597 kb on - strand, within GFF2653 at 46.597 kb on - strand, within GFF2653 at 46.630 kb on + strand, within GFF2653 at 46.631 kb on - strand, within GFF2653 at 46.696 kb on + strand, within GFF2653 at 46.697 kb on - strand, within GFF2653 at 46.697 kb on - strand, within GFF2653 at 46.711 kb on + strand, within GFF2653 at 46.711 kb on + strand, within GFF2653 at 46.712 kb on - strand, within GFF2653 at 46.712 kb on - strand, within GFF2653 at 46.712 kb on - strand, within GFF2653 at 46.731 kb on + strand, within GFF2653 at 46.731 kb on + strand, within GFF2653 at 46.731 kb on + strand, within GFF2653 at 46.731 kb on + strand, within GFF2653 at 46.731 kb on + strand, within GFF2653 at 46.731 kb on + strand, within GFF2653 at 46.732 kb on - strand, within GFF2653 at 46.732 kb on - strand, within GFF2653 at 46.732 kb on - strand, within GFF2653 at 46.735 kb on + strand, within GFF2653 at 46.735 kb on + strand, within GFF2653 at 46.735 kb on + strand, within GFF2653 at 46.735 kb on + strand, within GFF2653 at 46.735 kb on + strand, within GFF2653 at 46.735 kb on + strand, within GFF2653 at 46.735 kb on + strand, within GFF2653 at 46.735 kb on + strand, within GFF2653 at 46.735 kb on + strand, within GFF2653 at 46.735 kb on + strand, within GFF2653 at 46.735 kb on + strand, within GFF2653 at 46.735 kb on + strand, within GFF2653 at 46.735 kb on + strand, within GFF2653 at 46.736 kb on - strand, within GFF2653 at 46.736 kb on - strand, within GFF2653 at 46.736 kb on - strand, within GFF2653 at 46.736 kb on - strand, within GFF2653 at 46.736 kb on - strand, within GFF2653 at 46.736 kb on - strand, within GFF2653 at 46.736 kb on - strand, within GFF2653 at 46.736 kb on - strand, within GFF2653 at 46.736 kb on - strand, within GFF2653 at 46.736 kb on - strand, within GFF2653 at 46.736 kb on - strand, within GFF2653 at 46.738 kb on - strand, within GFF2653 at 46.814 kb on - strand, within GFF2653 at 46.849 kb on + strand, within GFF2653 at 46.849 kb on + strand, within GFF2653 at 46.850 kb on - strand, within GFF2653 at 46.850 kb on - strand, within GFF2653 at 46.850 kb on - strand, within GFF2653 at 46.850 kb on - strand, within GFF2653 at 46.891 kb on + strand, within GFF2653 at 46.900 kb on + strand, within GFF2653 at 46.900 kb on + strand, within GFF2653 at 46.956 kb on + strand, within GFF2653 at 46.956 kb on + strand, within GFF2653 at 46.956 kb on + strand, within GFF2653 at 46.956 kb on + strand, within GFF2653 at 46.957 kb on - strand, within GFF2653 at 46.981 kb on + strand, within GFF2653 at 46.982 kb on - strand, within GFF2653 at 47.037 kb on + strand, within GFF2653 at 47.037 kb on + strand, within GFF2653 at 47.038 kb on - strand, within GFF2653 at 47.101 kb on - strand, within GFF2653 at 47.101 kb on - strand, within GFF2653 at 47.166 kb on - strand, within GFF2653 at 47.172 kb on + strand, within GFF2653 at 47.319 kb on + strand at 47.319 kb on + strand at 47.320 kb on - strand at 47.403 kb on - strand at 47.403 kb on - strand at 47.477 kb on + strand at 47.477 kb on + strand at 47.477 kb on + strand at 47.477 kb on + strand at 47.478 kb on - strand at 47.478 kb on - strand at 47.508 kb on + strand at 47.509 kb on - strand at 47.536 kb on + strand at 47.537 kb on - strand at 47.616 kb on + strand, within GFF2654 at 47.616 kb on + strand, within GFF2654 at 47.617 kb on - strand, within GFF2654 at 47.722 kb on + strand, within GFF2654 at 47.776 kb on - strand, within GFF2654 at 47.834 kb on + strand, within GFF2654 at 47.835 kb on - strand, within GFF2654 at 47.871 kb on + strand, within GFF2654 at 47.871 kb on + strand, within GFF2654 at 47.911 kb on + strand, within GFF2654 at 47.911 kb on + strand, within GFF2654 at 47.912 kb on - strand, within GFF2654 at 48.016 kb on + strand, within GFF2654 at 48.016 kb on + strand, within GFF2654 at 48.016 kb on + strand, within GFF2654 at 48.036 kb on - strand, within GFF2654 at 48.036 kb on - strand, within GFF2654 at 48.113 kb on + strand, within GFF2654 at 48.113 kb on + strand, within GFF2654 at 48.113 kb on + strand, within GFF2654 at 48.113 kb on + strand, within GFF2654 at 48.113 kb on + strand, within GFF2654 at 48.113 kb on + strand, within GFF2654 at 48.113 kb on + strand, within GFF2654 at 48.113 kb on + strand, within GFF2654 at 48.113 kb on + strand, within GFF2654 at 48.113 kb on + strand, within GFF2654 at 48.113 kb on + strand, within GFF2654 at 48.114 kb on - strand, within GFF2654 at 48.114 kb on - strand, within GFF2654 at 48.114 kb on - strand, within GFF2654 at 48.114 kb on - strand, within GFF2654 at 48.114 kb on - strand, within GFF2654 at 48.114 kb on - strand, within GFF2654 at 48.114 kb on - strand, within GFF2654 at 48.114 kb on - strand, within GFF2654 at 48.239 kb on + strand, within GFF2654 at 48.260 kb on + strand, within GFF2654 at 48.261 kb on - strand, within GFF2654 at 48.267 kb on + strand, within GFF2654 at 48.267 kb on + strand, within GFF2654 at 48.268 kb on - strand, within GFF2654 at 48.268 kb on - strand, within GFF2654 at 48.268 kb on - strand, within GFF2654 at 48.417 kb on + strand at 48.417 kb on + strand at 48.417 kb on + strand at 48.418 kb on - strand at 48.448 kb on + strand at 48.449 kb on - strand at 48.449 kb on - strand at 48.449 kb on - strand at 48.449 kb on - strand at 48.490 kb on - strand at 48.490 kb on - strand at 48.548 kb on + strand at 48.565 kb on + strand at 48.565 kb on + strand at 48.565 kb on + strand at 48.566 kb on - strand at 48.566 kb on - strand at 48.566 kb on - strand at 48.606 kb on + strand at 48.606 kb on + strand at 48.606 kb on + strand at 48.607 kb on - strand at 48.607 kb on - strand at 48.607 kb on - strand at 48.607 kb on - strand at 48.611 kb on + strand at 48.611 kb on + strand at 48.611 kb on + strand at 48.611 kb on + strand at 48.611 kb on + strand at 48.611 kb on + strand at 48.611 kb on + strand at 48.611 kb on + strand at 48.611 kb on + strand at 48.611 kb on + strand at 48.611 kb on + strand at 48.611 kb on + strand at 48.612 kb on - strand at 48.612 kb on - strand at 48.613 kb on + strand at 48.614 kb on - strand at 48.654 kb on + strand at 48.670 kb on + strand at 48.670 kb on + strand at 48.670 kb on + strand at 48.671 kb on - strand at 48.671 kb on - strand at 48.671 kb on - strand at 48.671 kb on - strand at 48.717 kb on + strand at 48.804 kb on + strand, within GFF2655 at 48.804 kb on + strand, within GFF2655 at 48.805 kb on - strand, within GFF2655 at 48.808 kb on + strand, within GFF2655 at 48.808 kb on + strand, within GFF2655 at 48.808 kb on + strand, within GFF2655 at 48.808 kb on + strand, within GFF2655 at 48.808 kb on + strand, within GFF2655 at 48.808 kb on + strand, within GFF2655 at 48.808 kb on + strand, within GFF2655 at 48.809 kb on - strand, within GFF2655 at 48.809 kb on - strand, within GFF2655 at 48.809 kb on - strand, within GFF2655 at 48.809 kb on - strand, within GFF2655 at 48.809 kb on - strand, within GFF2655 at 48.809 kb on - strand, within GFF2655 at 48.809 kb on - strand, within GFF2655 at 48.810 kb on + strand, within GFF2655 at 48.810 kb on + strand, within GFF2655 at 48.810 kb on + strand, within GFF2655 at 48.811 kb on - strand, within GFF2655 at 48.852 kb on + strand, within GFF2655 at 48.852 kb on + strand, within GFF2655 at 48.853 kb on - strand, within GFF2655 at 49.023 kb on + strand, within GFF2655 at 49.023 kb on + strand, within GFF2655 at 49.050 kb on + strand, within GFF2655 at 49.050 kb on + strand, within GFF2655 at 49.050 kb on + strand, within GFF2655 at 49.050 kb on + strand, within GFF2655 at 49.051 kb on - strand, within GFF2655 at 49.093 kb on + strand, within GFF2655 at 49.093 kb on + strand, within GFF2655 at 49.094 kb on - strand, within GFF2655 at 49.094 kb on - strand, within GFF2655 at 49.110 kb on + strand, within GFF2655 at 49.162 kb on - strand, within GFF2655 at 49.177 kb on + strand, within GFF2655 at 49.177 kb on + strand, within GFF2655 at 49.177 kb on + strand, within GFF2655 at 49.178 kb on - strand, within GFF2655 at 49.178 kb on - strand, within GFF2655 at 49.178 kb on - strand, within GFF2655 at 49.178 kb on - strand, within GFF2655 at 49.178 kb on - strand, within GFF2655 at 49.180 kb on - strand, within GFF2655 at 49.199 kb on + strand, within GFF2655 at 49.199 kb on + strand, within GFF2655 at 49.199 kb on + strand, within GFF2655 at 49.200 kb on - strand, within GFF2655 at 49.227 kb on + strand, within GFF2655 at 49.227 kb on + strand, within GFF2655 at 49.311 kb on + strand, within GFF2655 at 49.312 kb on - strand, within GFF2655
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 46,481 + GFF2653 0.15 +0.3 46,481 + GFF2653 0.15 -0.2 46,482 - GFF2653 0.15 +0.3 46,498 + GFF2653 0.16 -0.6 46,498 + GFF2653 0.16 -1.3 46,498 + GFF2653 0.16 -0.6 46,498 + GFF2653 0.16 -0.7 46,499 - GFF2653 0.17 -0.6 46,499 - GFF2653 0.17 +0.7 46,525 + GFF2653 0.19 -0.1 46,575 + GFF2653 0.23 -0.0 46,575 + GFF2653 0.23 -1.0 46,575 + GFF2653 0.23 -0.0 46,575 + GFF2653 0.23 -0.3 46,576 - GFF2653 0.24 -0.5 46,596 + GFF2653 0.25 -0.2 46,596 + GFF2653 0.25 -0.3 46,596 + GFF2653 0.25 -0.6 46,596 + GFF2653 0.25 -1.0 46,596 + GFF2653 0.25 -1.0 46,596 + GFF2653 0.25 -0.1 46,596 + GFF2653 0.25 -0.5 46,596 + GFF2653 0.25 +0.6 46,597 - GFF2653 0.25 -0.6 46,597 - GFF2653 0.25 +0.2 46,597 - GFF2653 0.25 -0.4 46,597 - GFF2653 0.25 -1.1 46,597 - GFF2653 0.25 -0.3 46,630 + GFF2653 0.28 -0.8 46,631 - GFF2653 0.29 +0.2 46,696 + GFF2653 0.35 -0.0 46,697 - GFF2653 0.35 -0.8 46,697 - GFF2653 0.35 +0.4 46,711 + GFF2653 0.36 -0.5 46,711 + GFF2653 0.36 -0.6 46,712 - GFF2653 0.36 +0.4 46,712 - GFF2653 0.36 -0.3 46,712 - GFF2653 0.36 -0.8 46,731 + GFF2653 0.38 +0.1 46,731 + GFF2653 0.38 +0.2 46,731 + GFF2653 0.38 -0.9 46,731 + GFF2653 0.38 -0.5 46,731 + GFF2653 0.38 -0.0 46,731 + GFF2653 0.38 -0.0 46,732 - GFF2653 0.38 -0.4 46,732 - GFF2653 0.38 -0.5 46,732 - GFF2653 0.38 -0.2 46,735 + GFF2653 0.38 -1.1 46,735 + GFF2653 0.38 +1.2 46,735 + GFF2653 0.38 -0.2 46,735 + GFF2653 0.38 -0.8 46,735 + GFF2653 0.38 -1.0 46,735 + GFF2653 0.38 -0.7 46,735 + GFF2653 0.38 -0.6 46,735 + GFF2653 0.38 -1.0 46,735 + GFF2653 0.38 +0.0 46,735 + GFF2653 0.38 -0.5 46,735 + GFF2653 0.38 -0.8 46,735 + GFF2653 0.38 -0.3 46,735 + GFF2653 0.38 -0.5 46,736 - GFF2653 0.38 +0.4 46,736 - GFF2653 0.38 -0.0 46,736 - GFF2653 0.38 +0.3 46,736 - GFF2653 0.38 -2.5 46,736 - GFF2653 0.38 -0.1 46,736 - GFF2653 0.38 -0.5 46,736 - GFF2653 0.38 +0.4 46,736 - GFF2653 0.38 -1.0 46,736 - GFF2653 0.38 -0.2 46,736 - GFF2653 0.38 -1.2 46,736 - GFF2653 0.38 -0.4 46,738 - GFF2653 0.38 -0.0 46,814 - GFF2653 0.45 +0.6 46,849 + GFF2653 0.48 +0.2 46,849 + GFF2653 0.48 -0.8 46,850 - GFF2653 0.49 -0.6 46,850 - GFF2653 0.49 -1.8 46,850 - GFF2653 0.49 -0.0 46,850 - GFF2653 0.49 -0.4 46,891 + GFF2653 0.52 -1.0 46,900 + GFF2653 0.53 -0.6 46,900 + GFF2653 0.53 -0.3 46,956 + GFF2653 0.58 +0.6 46,956 + GFF2653 0.58 -0.6 46,956 + GFF2653 0.58 -1.3 46,956 + GFF2653 0.58 -0.0 46,957 - GFF2653 0.58 -0.9 46,981 + GFF2653 0.61 -0.5 46,982 - GFF2653 0.61 +0.2 47,037 + GFF2653 0.66 -0.6 47,037 + GFF2653 0.66 -0.6 47,038 - GFF2653 0.66 -0.7 47,101 - GFF2653 0.72 -1.0 47,101 - GFF2653 0.72 +0.4 47,166 - GFF2653 0.77 +0.2 47,172 + GFF2653 0.78 +1.3 47,319 + -0.6 47,319 + -1.5 47,320 - -0.5 47,403 - -0.3 47,403 - -1.1 47,477 + -0.9 47,477 + -0.2 47,477 + -1.7 47,477 + -1.3 47,478 - -0.9 47,478 - +0.1 47,508 + -0.8 47,509 - -0.0 47,536 + +0.6 47,537 - +0.7 47,616 + GFF2654 0.15 -1.2 47,616 + GFF2654 0.15 -2.0 47,617 - GFF2654 0.15 +0.3 47,722 + GFF2654 0.26 -0.0 47,776 - GFF2654 0.32 -0.7 47,834 + GFF2654 0.38 -0.5 47,835 - GFF2654 0.38 -1.0 47,871 + GFF2654 0.42 -0.4 47,871 + GFF2654 0.42 -1.0 47,911 + GFF2654 0.46 -0.0 47,911 + GFF2654 0.46 -0.6 47,912 - GFF2654 0.46 -1.7 48,016 + GFF2654 0.57 -0.6 48,016 + GFF2654 0.57 +0.6 48,016 + GFF2654 0.57 +0.3 48,036 - GFF2654 0.59 -1.0 48,036 - GFF2654 0.59 -0.2 48,113 + GFF2654 0.67 -0.4 48,113 + GFF2654 0.67 -0.7 48,113 + GFF2654 0.67 -0.6 48,113 + GFF2654 0.67 -0.0 48,113 + GFF2654 0.67 -1.3 48,113 + GFF2654 0.67 -0.9 48,113 + GFF2654 0.67 -0.7 48,113 + GFF2654 0.67 -0.6 48,113 + GFF2654 0.67 -1.9 48,113 + GFF2654 0.67 -1.1 48,113 + GFF2654 0.67 -0.6 48,114 - GFF2654 0.68 -1.8 48,114 - GFF2654 0.68 -2.7 48,114 - GFF2654 0.68 +0.4 48,114 - GFF2654 0.68 -0.8 48,114 - GFF2654 0.68 -0.8 48,114 - GFF2654 0.68 +0.3 48,114 - GFF2654 0.68 -0.2 48,114 - GFF2654 0.68 -0.0 48,239 + GFF2654 0.81 -0.2 48,260 + GFF2654 0.83 -1.2 48,261 - GFF2654 0.83 +0.1 48,267 + GFF2654 0.84 -0.8 48,267 + GFF2654 0.84 -0.7 48,268 - GFF2654 0.84 -0.2 48,268 - GFF2654 0.84 -0.2 48,268 - GFF2654 0.84 -1.1 48,417 + +0.5 48,417 + -1.6 48,417 + -0.3 48,418 - -0.3 48,448 + -0.3 48,449 - -0.0 48,449 - -0.3 48,449 - +1.0 48,449 - -0.8 48,490 - -1.0 48,490 - -1.2 48,548 + -0.2 48,565 + -0.0 48,565 + -0.3 48,565 + +0.5 48,566 - -0.3 48,566 - -0.2 48,566 - -0.6 48,606 + -0.0 48,606 + -0.0 48,606 + -0.2 48,607 - +0.6 48,607 - -1.0 48,607 - -0.8 48,607 - -1.3 48,611 + -0.1 48,611 + +0.9 48,611 + -0.3 48,611 + -0.2 48,611 + +0.3 48,611 + +0.3 48,611 + -0.8 48,611 + +0.4 48,611 + -0.9 48,611 + -0.6 48,611 + -1.6 48,611 + +0.4 48,612 - +0.6 48,612 - +1.0 48,613 + -0.3 48,614 - +0.3 48,654 + -0.3 48,670 + -0.4 48,670 + -0.8 48,670 + -0.0 48,671 - -0.1 48,671 - -0.3 48,671 - -1.8 48,671 - -1.3 48,717 + -1.2 48,804 + GFF2655 0.12 -0.3 48,804 + GFF2655 0.12 +0.1 48,805 - GFF2655 0.12 -0.6 48,808 + GFF2655 0.12 -0.7 48,808 + GFF2655 0.12 +0.6 48,808 + GFF2655 0.12 -0.4 48,808 + GFF2655 0.12 -1.2 48,808 + GFF2655 0.12 -0.5 48,808 + GFF2655 0.12 -0.2 48,808 + GFF2655 0.12 -0.3 48,809 - GFF2655 0.12 -1.0 48,809 - GFF2655 0.12 +0.7 48,809 - GFF2655 0.12 -0.0 48,809 - GFF2655 0.12 +0.5 48,809 - GFF2655 0.12 -1.4 48,809 - GFF2655 0.12 -0.8 48,809 - GFF2655 0.12 -0.0 48,810 + GFF2655 0.12 -0.7 48,810 + GFF2655 0.12 -1.0 48,810 + GFF2655 0.12 -0.3 48,811 - GFF2655 0.12 -0.1 48,852 + GFF2655 0.14 -1.1 48,852 + GFF2655 0.14 -1.1 48,853 - GFF2655 0.14 -0.1 49,023 + GFF2655 0.19 -0.0 49,023 + GFF2655 0.19 -0.8 49,050 + GFF2655 0.20 -0.3 49,050 + GFF2655 0.20 -0.0 49,050 + GFF2655 0.20 -1.4 49,050 + GFF2655 0.20 -0.3 49,051 - GFF2655 0.20 +0.2 49,093 + GFF2655 0.21 -0.1 49,093 + GFF2655 0.21 +0.4 49,094 - GFF2655 0.21 +0.1 49,094 - GFF2655 0.21 -0.2 49,110 + GFF2655 0.22 -0.4 49,162 - GFF2655 0.23 -1.6 49,177 + GFF2655 0.24 +0.4 49,177 + GFF2655 0.24 -0.4 49,177 + GFF2655 0.24 -0.2 49,178 - GFF2655 0.24 -0.4 49,178 - GFF2655 0.24 -0.6 49,178 - GFF2655 0.24 -0.0 49,178 - GFF2655 0.24 +0.7 49,178 - GFF2655 0.24 -2.1 49,180 - GFF2655 0.24 +0.3 49,199 + GFF2655 0.25 -0.6 49,199 + GFF2655 0.25 -0.3 49,199 + GFF2655 0.25 +0.0 49,200 - GFF2655 0.25 -1.6 49,227 + GFF2655 0.26 -0.7 49,227 + GFF2655 0.26 +0.3 49,311 + GFF2655 0.28 -1.2 49,312 - GFF2655 0.28 -0.4
Or see this region's nucleotide sequence