Strain Fitness in Methylophilus sp. DMC18 around GFF2482

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2479 and GFF2480 are separated by 86 nucleotidesGFF2480 and GFF2481 are separated by 22 nucleotidesGFF2481 and GFF2482 are separated by 58 nucleotidesGFF2482 and GFF2483 are separated by 15 nucleotidesGFF2483 and GFF2484 are separated by 33 nucleotides GFF2479 - hypothetical protein, at 182,607 to 183,254 GFF2479 GFF2480 - hypothetical protein, at 183,341 to 183,565 GFF2480 GFF2481 - Nucleoid occlusion factor SlmA, at 183,588 to 184,181 GFF2481 GFF2482 - hypothetical protein, at 184,240 to 184,905 GFF2482 GFF2483 - Glutathione S-transferase GST-6.0, at 184,921 to 185,538 GFF2483 GFF2484 - Acetylglutamate kinase, at 185,572 to 186,453 GFF2484 Position (kb) 184 185Strain fitness (log2 ratio) -3 -2 -1 0 1at 183.283 kb on + strandat 183.283 kb on + strandat 183.285 kb on + strandat 183.285 kb on + strandat 183.286 kb on - strandat 183.307 kb on - strandat 183.307 kb on - strandat 183.320 kb on - strandat 183.320 kb on - strandat 183.327 kb on - strandat 183.327 kb on - strandat 183.335 kb on - strandat 183.335 kb on - strandat 183.342 kb on + strandat 183.343 kb on - strandat 183.349 kb on + strandat 183.349 kb on + strandat 183.572 kb on + strandat 183.573 kb on - strandat 183.573 kb on - strandat 183.590 kb on - strandat 183.590 kb on - strandat 184.176 kb on - strandat 184.236 kb on - strandat 184.262 kb on + strandat 184.262 kb on + strandat 184.317 kb on + strand, within GFF2482at 184.317 kb on + strand, within GFF2482at 184.317 kb on + strand, within GFF2482at 184.320 kb on - strand, within GFF2482at 184.320 kb on - strand, within GFF2482at 184.443 kb on + strand, within GFF2482at 184.444 kb on - strand, within GFF2482at 184.444 kb on - strand, within GFF2482at 184.454 kb on - strand, within GFF2482at 184.568 kb on + strand, within GFF2482at 184.569 kb on - strand, within GFF2482at 184.621 kb on + strand, within GFF2482at 184.621 kb on + strand, within GFF2482at 184.621 kb on + strand, within GFF2482at 184.621 kb on + strand, within GFF2482at 184.621 kb on + strand, within GFF2482at 184.622 kb on - strand, within GFF2482at 184.743 kb on - strand, within GFF2482at 184.743 kb on - strand, within GFF2482at 184.743 kb on - strand, within GFF2482at 184.754 kb on + strand, within GFF2482at 184.755 kb on - strand, within GFF2482at 184.809 kb on + strand, within GFF2482at 184.810 kb on - strand, within GFF2482at 184.810 kb on - strand, within GFF2482at 184.811 kb on + strand, within GFF2482at 184.811 kb on + strand, within GFF2482at 184.811 kb on + strand, within GFF2482at 184.811 kb on + strand, within GFF2482at 184.811 kb on + strand, within GFF2482at 184.811 kb on + strand, within GFF2482at 184.812 kb on - strand, within GFF2482at 184.812 kb on - strand, within GFF2482at 184.907 kb on - strandat 184.922 kb on + strandat 184.970 kb on - strandat 184.970 kb on - strandat 184.973 kb on + strandat 184.973 kb on + strandat 184.973 kb on + strandat 184.973 kb on + strandat 184.973 kb on + strandat 184.974 kb on - strandat 184.974 kb on - strandat 185.001 kb on - strand, within GFF2483at 185.012 kb on + strand, within GFF2483at 185.012 kb on + strand, within GFF2483at 185.013 kb on - strand, within GFF2483at 185.013 kb on - strand, within GFF2483at 185.013 kb on - strand, within GFF2483at 185.013 kb on - strand, within GFF2483at 185.013 kb on - strand, within GFF2483at 185.045 kb on + strand, within GFF2483at 185.046 kb on - strand, within GFF2483at 185.081 kb on + strand, within GFF2483at 185.081 kb on + strand, within GFF2483at 185.081 kb on + strand, within GFF2483at 185.081 kb on + strand, within GFF2483at 185.081 kb on + strand, within GFF2483at 185.081 kb on + strand, within GFF2483at 185.081 kb on + strand, within GFF2483at 185.081 kb on + strand, within GFF2483at 185.081 kb on + strand, within GFF2483at 185.081 kb on + strand, within GFF2483at 185.082 kb on - strand, within GFF2483at 185.082 kb on - strand, within GFF2483at 185.082 kb on - strand, within GFF2483at 185.082 kb on - strand, within GFF2483at 185.082 kb on - strand, within GFF2483at 185.082 kb on - strand, within GFF2483at 185.082 kb on - strand, within GFF2483at 185.082 kb on - strand, within GFF2483at 185.096 kb on - strand, within GFF2483at 185.112 kb on + strand, within GFF2483at 185.113 kb on - strand, within GFF2483at 185.117 kb on - strand, within GFF2483at 185.117 kb on - strand, within GFF2483at 185.117 kb on - strand, within GFF2483at 185.117 kb on - strand, within GFF2483at 185.292 kb on + strand, within GFF2483at 185.324 kb on + strand, within GFF2483at 185.324 kb on + strand, within GFF2483at 185.324 kb on + strand, within GFF2483at 185.324 kb on + strand, within GFF2483at 185.324 kb on + strand, within GFF2483at 185.324 kb on + strand, within GFF2483at 185.324 kb on + strand, within GFF2483at 185.324 kb on + strand, within GFF2483at 185.324 kb on + strand, within GFF2483at 185.324 kb on + strand, within GFF2483at 185.325 kb on - strand, within GFF2483at 185.325 kb on - strand, within GFF2483at 185.325 kb on - strand, within GFF2483at 185.325 kb on - strand, within GFF2483at 185.325 kb on - strand, within GFF2483at 185.380 kb on + strand, within GFF2483at 185.380 kb on + strand, within GFF2483at 185.381 kb on - strand, within GFF2483at 185.381 kb on - strand, within GFF2483at 185.381 kb on - strand, within GFF2483at 185.381 kb on - strand, within GFF2483at 185.381 kb on - strand, within GFF2483at 185.408 kb on + strand, within GFF2483at 185.409 kb on - strand, within GFF2483at 185.409 kb on - strand, within GFF2483at 185.457 kb on - strand, within GFF2483at 185.457 kb on - strand, within GFF2483at 185.457 kb on - strand, within GFF2483at 185.521 kb on + strandat 185.522 kb on - strandat 185.526 kb on + strandat 185.526 kb on + strandat 185.527 kb on - strandat 185.573 kb on + strandat 185.574 kb on - strandat 185.574 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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183,283 + -0.8
183,283 + -0.9
183,285 + +1.3
183,285 + -1.2
183,286 - -0.3
183,307 - -0.7
183,307 - -0.8
183,320 - -0.7
183,320 - -0.4
183,327 - -0.4
183,327 - -2.1
183,335 - -1.8
183,335 - +0.2
183,342 + -0.1
183,343 - -0.8
183,349 + -0.3
183,349 + -2.1
183,572 + -1.1
183,573 - -0.4
183,573 - -1.7
183,590 - +0.1
183,590 - -1.7
184,176 - -1.4
184,236 - +0.2
184,262 + -1.1
184,262 + -1.2
184,317 + GFF2482 0.12 -0.9
184,317 + GFF2482 0.12 -2.9
184,317 + GFF2482 0.12 +0.3
184,320 - GFF2482 0.12 -1.5
184,320 - GFF2482 0.12 -1.5
184,443 + GFF2482 0.30 -0.1
184,444 - GFF2482 0.31 -0.2
184,444 - GFF2482 0.31 -1.7
184,454 - GFF2482 0.32 -0.7
184,568 + GFF2482 0.49 -1.1
184,569 - GFF2482 0.49 -1.1
184,621 + GFF2482 0.57 -0.1
184,621 + GFF2482 0.57 +0.2
184,621 + GFF2482 0.57 -0.4
184,621 + GFF2482 0.57 -1.5
184,621 + GFF2482 0.57 -0.1
184,622 - GFF2482 0.57 -1.1
184,743 - GFF2482 0.76 -0.4
184,743 - GFF2482 0.76 -2.0
184,743 - GFF2482 0.76 +0.9
184,754 + GFF2482 0.77 -1.4
184,755 - GFF2482 0.77 -1.2
184,809 + GFF2482 0.85 -1.9
184,810 - GFF2482 0.86 +0.2
184,810 - GFF2482 0.86 +0.6
184,811 + GFF2482 0.86 -1.9
184,811 + GFF2482 0.86 -1.1
184,811 + GFF2482 0.86 -1.4
184,811 + GFF2482 0.86 -0.9
184,811 + GFF2482 0.86 -1.5
184,811 + GFF2482 0.86 -1.2
184,812 - GFF2482 0.86 -1.1
184,812 - GFF2482 0.86 -0.9
184,907 - +0.1
184,922 + -0.7
184,970 - -0.1
184,970 - -0.3
184,973 + -1.4
184,973 + -0.8
184,973 + -0.4
184,973 + -1.5
184,973 + -0.8
184,974 - -0.4
184,974 - +1.1
185,001 - GFF2483 0.13 -1.7
185,012 + GFF2483 0.15 -0.5
185,012 + GFF2483 0.15 -1.1
185,013 - GFF2483 0.15 -0.1
185,013 - GFF2483 0.15 -1.5
185,013 - GFF2483 0.15 -0.2
185,013 - GFF2483 0.15 -2.6
185,013 - GFF2483 0.15 +0.1
185,045 + GFF2483 0.20 +0.6
185,046 - GFF2483 0.20 -0.7
185,081 + GFF2483 0.26 -0.1
185,081 + GFF2483 0.26 +0.3
185,081 + GFF2483 0.26 -0.7
185,081 + GFF2483 0.26 -1.1
185,081 + GFF2483 0.26 -1.0
185,081 + GFF2483 0.26 -0.1
185,081 + GFF2483 0.26 -1.7
185,081 + GFF2483 0.26 +0.4
185,081 + GFF2483 0.26 +0.1
185,081 + GFF2483 0.26 -1.1
185,082 - GFF2483 0.26 -0.1
185,082 - GFF2483 0.26 +0.3
185,082 - GFF2483 0.26 +0.2
185,082 - GFF2483 0.26 -0.7
185,082 - GFF2483 0.26 -0.9
185,082 - GFF2483 0.26 -1.0
185,082 - GFF2483 0.26 -1.3
185,082 - GFF2483 0.26 -2.1
185,096 - GFF2483 0.28 +0.1
185,112 + GFF2483 0.31 -1.1
185,113 - GFF2483 0.31 -0.7
185,117 - GFF2483 0.32 -0.1
185,117 - GFF2483 0.32 +0.0
185,117 - GFF2483 0.32 -0.1
185,117 - GFF2483 0.32 -1.1
185,292 + GFF2483 0.60 -0.6
185,324 + GFF2483 0.65 +0.9
185,324 + GFF2483 0.65 -0.7
185,324 + GFF2483 0.65 -1.5
185,324 + GFF2483 0.65 -2.2
185,324 + GFF2483 0.65 +0.1
185,324 + GFF2483 0.65 -0.1
185,324 + GFF2483 0.65 -0.1
185,324 + GFF2483 0.65 -1.4
185,324 + GFF2483 0.65 -0.4
185,324 + GFF2483 0.65 +0.8
185,325 - GFF2483 0.65 -0.7
185,325 - GFF2483 0.65 -0.4
185,325 - GFF2483 0.65 -0.1
185,325 - GFF2483 0.65 -0.2
185,325 - GFF2483 0.65 +0.9
185,380 + GFF2483 0.74 -2.1
185,380 + GFF2483 0.74 +0.8
185,381 - GFF2483 0.74 -0.9
185,381 - GFF2483 0.74 -1.3
185,381 - GFF2483 0.74 -1.7
185,381 - GFF2483 0.74 -0.1
185,381 - GFF2483 0.74 +0.1
185,408 + GFF2483 0.79 +0.6
185,409 - GFF2483 0.79 +0.6
185,409 - GFF2483 0.79 -0.6
185,457 - GFF2483 0.87 +0.2
185,457 - GFF2483 0.87 -1.1
185,457 - GFF2483 0.87 -0.1
185,521 + -1.1
185,522 - +0.7
185,526 + -0.9
185,526 + -1.1
185,527 - -1.4
185,573 + -1.9
185,574 - -1.6
185,574 - -0.4

Or see this region's nucleotide sequence