Strain Fitness in Methylophilus sp. DMC18 around GFF2447

Experiment: Methanol and casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Methanol and casaminos (C)
147,731	-				-0.4
147,731	-				-0.1
147,731	-				-3.5
147,731	-				+0.0
147,731	-				-1.2
147,731	-				-0.2
147,731	-				+0.3
147,731	-				+0.7
147,731	-				-1.1
147,731	-				-0.1
147,731	-				-1.4
147,731	-				-1.1
147,731	-				-0.7
147,731	-				-1.7
147,731	-				-0.4
147,731	-				-0.8
147,739	-				-1.1
147,739	-				-0.2
147,742	-				-1.4
147,742	-				-0.2
147,782	-				-1.3
147,786	-				-1.7
147,786	-				+0.3
147,786	-				-0.1
147,786	-				-0.2
147,786	-				-0.3
147,786	-				-0.8
147,793	-				-0.1
147,805	-				-0.2
147,805	-				-0.6
147,841	-				+0.2
147,841	-				-0.7
147,841	-				+0.1
147,879	+				-3.1
147,879	+				-0.9
147,880	-				-0.8
147,880	-				-1.7
147,880	-				-0.7
147,880	-				-0.5
147,882	+				-1.4
147,882	+				-1.1
147,883	-				-1.6
147,883	-				-0.7
147,883	-				-0.4
147,883	-				-2.9
147,883	-				-0.7
147,883	-				-1.4
147,883	-				-1.5
147,883	-				+0.9
147,884	+				+1.5
147,884	+				-0.5
147,885	-				-0.4
147,885	-				-0.1
147,885	-				-0.3
147,885	-				-1.1
147,885	-				+0.2
147,885	-				-0.0
147,885	-				-0.5
147,885	-				-0.6
147,885	-				-0.9
147,904	-				-0.7
147,904	-				-0.8
147,904	-				-0.9
147,904	-				-0.8
147,924	+				-0.1
147,924	+				+0.1
147,924	+				-0.7
147,924	+				-2.3
147,924	+				+1.0
147,925	-				-0.4
147,925	-				-0.4
147,944	+				+0.1
147,945	-				-0.1
147,945	-				+0.2
147,945	-				+1.5
147,945	-				-1.9
147,953	+				-1.4
147,975	+				-0.6
147,975	+				-0.7
147,979	+				-0.1
147,979	+				-1.0
147,980	-				-0.4
147,980	-				-0.3
147,980	-				-0.9
148,008	+				-0.1
148,009	-				-0.7
148,014	+				-1.2
148,015	-				-1.5
148,015	-				-0.3
148,017	+				-0.9
148,017	+				+0.9
148,017	+				+0.1
148,017	+				-1.3
148,017	+				+0.5
148,018	-				-0.3
148,088	-		GFF2446	0.23	-1.4
148,107	-		GFF2446	0.27	-1.5
148,190	+		GFF2446	0.44	-0.4
148,190	+		GFF2446	0.44	+0.6
148,191	-		GFF2446	0.44	-2.4
148,191	-		GFF2446	0.44	-0.3
148,191	-		GFF2446	0.44	-0.7
148,241	+		GFF2446	0.54	-0.1
148,241	+		GFF2446	0.54	-0.7
148,242	-		GFF2446	0.54	-0.3
148,268	+		GFF2446	0.59	-0.7
148,268	+		GFF2446	0.59	-0.2
148,269	-		GFF2446	0.59	-1.1
148,269	-		GFF2446	0.59	-0.5
148,269	-		GFF2446	0.59	-0.9
148,279	+		GFF2446	0.61	+0.9
148,279	+		GFF2446	0.61	-0.4
148,280	-		GFF2446	0.62	-0.5
148,280	-		GFF2446	0.62	+0.1
148,280	-		GFF2446	0.62	+0.2
148,358	+		GFF2446	0.77	-1.0
148,358	+		GFF2446	0.77	+1.3
148,358	+		GFF2446	0.77	-0.5
148,358	+		GFF2446	0.77	-1.1
148,359	-		GFF2446	0.77	+0.1
148,359	-		GFF2446	0.77	-0.4
148,359	-		GFF2446	0.77	+0.4
148,359	-		GFF2446	0.77	-0.7
148,359	-		GFF2446	0.77	+0.3
148,360	+		GFF2446	0.78	-0.9
148,360	+		GFF2446	0.78	-0.2
148,360	+		GFF2446	0.78	-0.3
148,360	+		GFF2446	0.78	+0.7
148,360	+		GFF2446	0.78	-1.7
148,360	+		GFF2446	0.78	-1.5
148,360	+		GFF2446	0.78	-1.1
148,360	+		GFF2446	0.78	+0.5
148,360	+		GFF2446	0.78	-0.4
148,360	+		GFF2446	0.78	-2.8
148,360	+		GFF2446	0.78	-0.7
148,360	+		GFF2446	0.78	+0.2
148,360	+		GFF2446	0.78	-1.9
148,360	+		GFF2446	0.78	-0.1
148,361	-		GFF2446	0.78	-0.1
148,361	-		GFF2446	0.78	-0.9
148,361	-		GFF2446	0.78	+1.2
148,361	-		GFF2446	0.78	-0.1
148,361	-		GFF2446	0.78	-0.5
148,361	-		GFF2446	0.78	+0.6
148,361	-		GFF2446	0.78	-0.1
148,364	+		GFF2446	0.78	-0.6
148,364	+		GFF2446	0.78	-0.7
148,364	+		GFF2446	0.78	-1.4
148,364	+		GFF2446	0.78	-1.1
148,364	+		GFF2446	0.78	-0.7
148,364	+		GFF2446	0.78	-0.1
148,364	+		GFF2446	0.78	-1.2
148,365	-		GFF2446	0.79	-0.2
148,365	-		GFF2446	0.79	+0.0
148,365	-		GFF2446	0.79	-0.3
148,365	-		GFF2446	0.79	-0.9
148,385	+		GFF2446	0.83	-0.1
148,385	+		GFF2446	0.83	-0.1
148,385	+		GFF2446	0.83	-0.5
148,386	-		GFF2446	0.83	+0.0
148,393	+		GFF2446	0.84	-1.4
148,431	+				-1.8
148,431	+				+0.2
148,431	+				-0.1
148,431	+				-1.2
148,432	-				-0.8
148,432	-				-0.3
148,450	+				-0.3
148,470	-				+0.1
148,474	+				+0.5
148,475	-				-1.4
148,475	-				+0.6
148,475	-				-0.7
148,572	-		GFF2447	0.34	-1.4
148,572	-		GFF2447	0.34	-0.4
148,580	+		GFF2447	0.37	-0.4
148,599	+		GFF2447	0.44	-1.4
148,600	-		GFF2447	0.44	-0.8
148,627	+		GFF2447	0.53	-1.7
148,627	+		GFF2447	0.53	-1.1
148,636	+		GFF2447	0.57	-1.7
148,669	+		GFF2447	0.68	-2.2
148,669	+		GFF2447	0.68	-1.1
148,669	+		GFF2447	0.68	-0.7
148,669	+		GFF2447	0.68	-2.6
148,669	+		GFF2447	0.68	-0.1
148,670	-		GFF2447	0.68	+0.5
148,670	-		GFF2447	0.68	+0.1
148,670	-		GFF2447	0.68	-0.6
148,682	+		GFF2447	0.73	-0.8
148,682	+		GFF2447	0.73	-0.4
148,682	+		GFF2447	0.73	-0.7
148,682	+		GFF2447	0.73	-1.4
148,683	-		GFF2447	0.73	+0.2
148,683	-		GFF2447	0.73	-1.3
148,683	-		GFF2447	0.73	-1.7
148,683	-		GFF2447	0.73	-1.1
148,683	-		GFF2447	0.73	-1.4
148,683	-		GFF2447	0.73	-1.1
148,683	-		GFF2447	0.73	+0.5
148,740	-				-1.7
148,743	-				-2.1
148,772	-				-1.1
148,785	+				-1.6
148,785	+				-0.1
148,785	+				-0.2
148,785	+				-1.1
148,785	+				-0.3
148,786	-				-0.1
148,786	-				-0.6
148,786	-				-0.1
148,786	-				-0.8
148,786	-				-0.6
148,786	-				-0.4
148,786	-				-2.2
148,786	-				-0.5
148,786	-				-1.2
148,789	-				-0.1
148,789	-				-0.5
148,806	-				-0.4
148,811	+				+0.1
148,812	-				-0.1
148,829	+				-1.2
148,829	+				-1.0
148,830	-				+0.1
148,830	-				-0.9
148,830	-				+0.1
148,887	+				-0.7
148,887	+				-1.5
148,887	+				-0.7
148,887	+				-0.8
148,888	-				-2.5
148,888	-				-0.3
148,888	-				+0.7
148,888	-				-0.6
148,888	-				-1.4
148,888	-				-0.4
148,888	-				-1.7
148,888	-				+0.1
148,894	+				-1.9
148,894	+				-1.5
148,894	+				-1.8
148,894	+				-0.3
148,895	-				+0.1
148,895	-				-2.1
148,895	-				-0.9
148,895	-				-2.4
148,895	-				-0.8
148,895	-				-0.3
148,895	-				+0.2
148,895	-				-1.4
148,896	+				+0.5
149,082	+		GFF2448	0.34	+0.1
149,082	+		GFF2448	0.34	-0.8
149,082	+		GFF2448	0.34	-0.7
149,082	+		GFF2448	0.34	-1.1
149,083	-		GFF2448	0.35	-0.2
149,083	-		GFF2448	0.35	-1.1
149,083	-		GFF2448	0.35	-0.1
149,083	-		GFF2448	0.35	-0.7
149,083	-		GFF2448	0.35	-0.7
149,083	-		GFF2448	0.35	-0.5
149,083	-		GFF2448	0.35	-1.2
149,083	-		GFF2448	0.35	-0.8
149,083	-		GFF2448	0.35	-0.7
149,083	-		GFF2448	0.35	+0.5
149,083	-		GFF2448	0.35	-1.1
149,083	-		GFF2448	0.35	-0.9
149,083	-		GFF2448	0.35	-0.9
149,083	-		GFF2448	0.35	-1.3
149,107	+		GFF2448	0.39	+0.3
149,107	+		GFF2448	0.39	+0.2
149,108	-		GFF2448	0.39	-0.7
149,108	-		GFF2448	0.39	-0.7
149,123	+		GFF2448	0.42	+0.6
149,124	-		GFF2448	0.42	-1.1
149,129	+		GFF2448	0.43	-0.2
149,141	+		GFF2448	0.45	-1.2
149,141	+		GFF2448	0.45	-1.4
149,141	+		GFF2448	0.45	-0.1
149,141	+		GFF2448	0.45	-0.2
149,141	+		GFF2448	0.45	+0.6
149,142	-		GFF2448	0.45	+0.3
149,142	-		GFF2448	0.45	-1.7
149,142	-		GFF2448	0.45	-1.7
149,142	-		GFF2448	0.45	-0.9
149,142	-		GFF2448	0.45	-0.1
149,238	+		GFF2448	0.62	-1.9
149,238	+		GFF2448	0.62	-0.4
149,239	-		GFF2448	0.62	+0.4
149,239	-		GFF2448	0.62	-2.2
149,239	-		GFF2448	0.62	-0.1
149,239	-		GFF2448	0.62	+0.3
149,254	+		GFF2448	0.65	-0.1
149,254	+		GFF2448	0.65	-0.2
149,254	+		GFF2448	0.65	-0.7
149,255	-		GFF2448	0.65	-0.4
149,255	-		GFF2448	0.65	-0.1
149,255	-		GFF2448	0.65	+0.5
149,255	-		GFF2448	0.65	-0.9
149,255	-		GFF2448	0.65	-1.9
149,272	+		GFF2448	0.68	-1.9
149,272	+		GFF2448	0.68	-1.1
149,273	-		GFF2448	0.68	-0.1
149,273	-		GFF2448	0.68	-2.1
149,273	-		GFF2448	0.68	-0.4
149,273	-		GFF2448	0.68	+0.1
149,273	-		GFF2448	0.68	-1.1
149,274	+		GFF2448	0.68	+0.9
149,274	+		GFF2448	0.68	-1.7
149,274	+		GFF2448	0.68	-0.9
149,274	+		GFF2448	0.68	-2.3
149,274	+		GFF2448	0.68	+0.0
149,275	-		GFF2448	0.68	+0.5
149,275	-		GFF2448	0.68	-1.3
149,275	-		GFF2448	0.68	-0.9
149,275	-		GFF2448	0.68	-1.3
149,325	+		GFF2448	0.77	-0.9
149,325	+		GFF2448	0.77	-2.1
149,325	+		GFF2448	0.77	-0.3
149,325	+		GFF2448	0.77	-0.1
149,326	-		GFF2448	0.77	+0.9
149,421	-				-1.4
149,421	-				+0.9
149,421	-				+0.1
149,421	-				-1.1
149,424	-				-1.9
149,475	+				-0.8
149,476	-				-1.7
149,497	+				-0.5
149,498	-				+0.5
149,498	-				+0.4
149,520	-				-1.2
149,527	+				-0.3
149,536	+				-0.9
149,536	+				-1.2
149,641	+		GFF2449	0.30	-0.1
149,642	-		GFF2449	0.30	+0.9
149,644	+		GFF2449	0.31	-0.1
149,644	+		GFF2449	0.31	-1.5
149,645	-		GFF2449	0.31	+0.2
149,687	+		GFF2449	0.43	-1.8
149,688	-		GFF2449	0.43	+0.9
149,688	-		GFF2449	0.43	-1.9
149,688	-		GFF2449	0.43	+0.2
149,688	-		GFF2449	0.43	+0.2
149,724	+		GFF2449	0.53	-1.7
149,725	-		GFF2449	0.53	-0.9
149,736	+		GFF2449	0.56	+0.9
149,736	+		GFF2449	0.56	-0.1
149,737	-		GFF2449	0.57	-1.4
149,737	-		GFF2449	0.57	-1.5
149,737	-		GFF2449	0.57	-0.7
149,750	+		GFF2449	0.60	+0.4