Strain Fitness in Methylophilus sp. DMC18 around GFF2334

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2332 and GFF2333 are separated by 61 nucleotidesGFF2333 and GFF2334 are separated by 22 nucleotidesGFF2334 and GFF2335 are separated by 84 nucleotidesGFF2335 and GFF2336 are separated by 2 nucleotides GFF2332 - Tol-Pal system protein TolB, at 45,558 to 46,895 GFF2332 GFF2333 - Peptidoglycan-associated lipoprotein, at 46,957 to 47,508 GFF2333 GFF2334 - Cell division coordinator CpoB, at 47,531 to 48,358 GFF2334 GFF2335 - 7-carboxy-7-deazaguanine synthase, at 48,443 to 49,084 GFF2335 GFF2336 - 7-cyano-7-deazaguanine synthase, at 49,087 to 49,785 GFF2336 Position (kb) 47 48 49Strain fitness (log2 ratio) -3 -2 -1 0 1at 46.893 kb on + strandat 46.893 kb on + strandat 46.893 kb on + strandat 46.893 kb on + strandat 46.893 kb on + strandat 46.893 kb on + strandat 46.894 kb on - strandat 46.899 kb on + strandat 46.906 kb on + strandat 46.927 kb on + strandat 47.506 kb on + strandat 47.506 kb on + strandat 47.584 kb on + strandat 47.602 kb on + strandat 47.602 kb on + strandat 47.827 kb on + strand, within GFF2334at 47.833 kb on + strand, within GFF2334at 47.833 kb on + strand, within GFF2334at 47.833 kb on + strand, within GFF2334at 47.833 kb on + strand, within GFF2334at 47.834 kb on - strand, within GFF2334at 47.852 kb on + strand, within GFF2334at 47.852 kb on + strand, within GFF2334at 47.922 kb on + strand, within GFF2334at 48.029 kb on + strand, within GFF2334at 48.029 kb on + strand, within GFF2334at 48.029 kb on + strand, within GFF2334at 48.030 kb on - strand, within GFF2334at 48.030 kb on - strand, within GFF2334at 48.030 kb on - strand, within GFF2334at 48.043 kb on + strand, within GFF2334at 48.044 kb on - strand, within GFF2334at 48.050 kb on + strand, within GFF2334at 48.071 kb on + strand, within GFF2334at 48.071 kb on + strand, within GFF2334at 48.071 kb on + strand, within GFF2334at 48.072 kb on - strand, within GFF2334at 48.072 kb on - strand, within GFF2334at 48.072 kb on - strand, within GFF2334at 48.076 kb on + strand, within GFF2334at 48.076 kb on + strand, within GFF2334at 48.077 kb on - strand, within GFF2334at 48.077 kb on - strand, within GFF2334at 48.079 kb on + strand, within GFF2334at 48.079 kb on + strand, within GFF2334at 48.079 kb on + strand, within GFF2334at 48.080 kb on - strand, within GFF2334at 48.104 kb on + strand, within GFF2334at 48.104 kb on + strand, within GFF2334at 48.104 kb on + strand, within GFF2334at 48.105 kb on - strand, within GFF2334at 48.105 kb on - strand, within GFF2334at 48.116 kb on + strand, within GFF2334at 48.118 kb on + strand, within GFF2334at 48.118 kb on + strand, within GFF2334at 48.119 kb on - strand, within GFF2334at 48.119 kb on - strand, within GFF2334at 48.119 kb on - strand, within GFF2334at 48.140 kb on + strand, within GFF2334at 48.140 kb on + strand, within GFF2334at 48.229 kb on + strand, within GFF2334at 48.293 kb on + strandat 48.293 kb on + strandat 48.316 kb on + strandat 48.316 kb on + strandat 48.317 kb on - strandat 48.317 kb on - strandat 48.356 kb on + strandat 48.356 kb on + strandat 48.384 kb on + strandat 48.385 kb on - strandat 48.385 kb on - strandat 48.409 kb on + strandat 48.409 kb on + strandat 48.415 kb on + strandat 48.415 kb on + strandat 48.415 kb on + strandat 48.415 kb on + strandat 48.416 kb on - strandat 48.416 kb on - strandat 48.427 kb on + strandat 49.082 kb on + strandat 49.082 kb on + strandat 49.082 kb on + strandat 49.082 kb on + strandat 49.082 kb on + strandat 49.082 kb on + strandat 49.082 kb on + strandat 49.082 kb on + strandat 49.083 kb on - strandat 49.083 kb on - strandat 49.105 kb on - strandat 49.118 kb on + strandat 49.143 kb on + strandat 49.144 kb on - strandat 49.144 kb on - strandat 49.144 kb on - strandat 49.174 kb on + strand, within GFF2336at 49.174 kb on + strand, within GFF2336at 49.174 kb on + strand, within GFF2336at 49.175 kb on - strand, within GFF2336at 49.175 kb on - strand, within GFF2336at 49.184 kb on - strand, within GFF2336at 49.216 kb on - strand, within GFF2336at 49.216 kb on - strand, within GFF2336

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
46,893 + -1.4
46,893 + -0.7
46,893 + -1.4
46,893 + +0.4
46,893 + -0.1
46,893 + +0.1
46,894 - -1.1
46,899 + -0.3
46,906 + +0.2
46,927 + -0.1
47,506 + -1.4
47,506 + -1.1
47,584 + -0.4
47,602 + -1.4
47,602 + -1.1
47,827 + GFF2334 0.36 -1.7
47,833 + GFF2334 0.36 +1.5
47,833 + GFF2334 0.36 -2.1
47,833 + GFF2334 0.36 -1.5
47,833 + GFF2334 0.36 -1.0
47,834 - GFF2334 0.37 -1.1
47,852 + GFF2334 0.39 -1.7
47,852 + GFF2334 0.39 -1.1
47,922 + GFF2334 0.47 -1.4
48,029 + GFF2334 0.60 -0.7
48,029 + GFF2334 0.60 -1.4
48,029 + GFF2334 0.60 +1.3
48,030 - GFF2334 0.60 -0.1
48,030 - GFF2334 0.60 -0.4
48,030 - GFF2334 0.60 -0.4
48,043 + GFF2334 0.62 -2.5
48,044 - GFF2334 0.62 -1.1
48,050 + GFF2334 0.63 -0.1
48,071 + GFF2334 0.65 -2.1
48,071 + GFF2334 0.65 -1.1
48,071 + GFF2334 0.65 -0.1
48,072 - GFF2334 0.65 -1.4
48,072 - GFF2334 0.65 -1.7
48,072 - GFF2334 0.65 -2.1
48,076 + GFF2334 0.66 -1.4
48,076 + GFF2334 0.66 -1.9
48,077 - GFF2334 0.66 -1.7
48,077 - GFF2334 0.66 -0.9
48,079 + GFF2334 0.66 -0.1
48,079 + GFF2334 0.66 -0.5
48,079 + GFF2334 0.66 +0.2
48,080 - GFF2334 0.66 -1.7
48,104 + GFF2334 0.69 -0.1
48,104 + GFF2334 0.69 -0.4
48,104 + GFF2334 0.69 -1.1
48,105 - GFF2334 0.69 -1.7
48,105 - GFF2334 0.69 -0.8
48,116 + GFF2334 0.71 -1.4
48,118 + GFF2334 0.71 +0.5
48,118 + GFF2334 0.71 -0.5
48,119 - GFF2334 0.71 -0.1
48,119 - GFF2334 0.71 -0.1
48,119 - GFF2334 0.71 -1.1
48,140 + GFF2334 0.74 -0.1
48,140 + GFF2334 0.74 -1.1
48,229 + GFF2334 0.84 -3.3
48,293 + -1.1
48,293 + -1.4
48,316 + -0.4
48,316 + -1.3
48,317 - +0.2
48,317 - -0.7
48,356 + +0.2
48,356 + -1.5
48,384 + -2.3
48,385 - -1.1
48,385 - +0.6
48,409 + -0.4
48,409 + -1.1
48,415 + -0.9
48,415 + -0.2
48,415 + -0.4
48,415 + -1.1
48,416 - -0.8
48,416 - -2.0
48,427 + -0.1
49,082 + -2.3
49,082 + -1.7
49,082 + -0.9
49,082 + +0.6
49,082 + -1.0
49,082 + -0.4
49,082 + -1.2
49,082 + -2.3
49,083 - -0.8
49,083 - +0.9
49,105 - +0.7
49,118 + -1.0
49,143 + -1.1
49,144 - +0.6
49,144 - -0.4
49,144 - +0.9
49,174 + GFF2336 0.12 +0.8
49,174 + GFF2336 0.12 +0.9
49,174 + GFF2336 0.12 +0.1
49,175 - GFF2336 0.13 +0.7
49,175 - GFF2336 0.13 -0.1
49,184 - GFF2336 0.14 -0.1
49,216 - GFF2336 0.18 +0.2
49,216 - GFF2336 0.18 -1.1

Or see this region's nucleotide sequence