Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2258 and GFF2259 are separated by 5 nucleotides GFF2259 and GFF2260 are separated by 72 nucleotides GFF2260 and GFF2261 are separated by 198 nucleotides GFF2261 and GFF2262 are separated by 86 nucleotides
GFF2258 - Phosphorylated carbohydrates phosphatase, at 323,150 to 323,803
GFF2258
GFF2259 - Thiopurine S-methyltransferase, at 323,809 to 324,471
GFF2259
GFF2260 - hypothetical protein, at 324,544 to 325,791
GFF2260
GFF2261 - hypothetical protein, at 325,990 to 326,298
GFF2261
GFF2262 - Oligopeptidase A, at 326,385 to 328,415
GFF2262
Position (kb) 324
325
326 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 323.561 kb on + strand, within GFF2258 at 323.561 kb on + strand, within GFF2258 at 323.561 kb on + strand, within GFF2258 at 323.561 kb on + strand, within GFF2258 at 323.561 kb on + strand, within GFF2258 at 323.562 kb on - strand, within GFF2258 at 323.562 kb on - strand, within GFF2258 at 323.562 kb on - strand, within GFF2258 at 323.644 kb on + strand, within GFF2258 at 323.683 kb on - strand, within GFF2258 at 323.810 kb on + strand at 323.868 kb on + strand at 323.869 kb on - strand at 323.887 kb on + strand, within GFF2259 at 323.888 kb on - strand, within GFF2259 at 323.888 kb on - strand, within GFF2259 at 323.888 kb on - strand, within GFF2259 at 323.888 kb on - strand, within GFF2259 at 323.888 kb on - strand, within GFF2259 at 323.905 kb on + strand, within GFF2259 at 323.905 kb on + strand, within GFF2259 at 323.906 kb on - strand, within GFF2259 at 323.910 kb on + strand, within GFF2259 at 323.910 kb on + strand, within GFF2259 at 323.911 kb on - strand, within GFF2259 at 323.924 kb on + strand, within GFF2259 at 323.925 kb on - strand, within GFF2259 at 323.955 kb on + strand, within GFF2259 at 323.956 kb on - strand, within GFF2259 at 323.956 kb on - strand, within GFF2259 at 323.956 kb on - strand, within GFF2259 at 323.988 kb on - strand, within GFF2259 at 324.047 kb on + strand, within GFF2259 at 324.095 kb on + strand, within GFF2259 at 324.106 kb on + strand, within GFF2259 at 324.106 kb on + strand, within GFF2259 at 324.106 kb on + strand, within GFF2259 at 324.106 kb on + strand, within GFF2259 at 324.106 kb on + strand, within GFF2259 at 324.217 kb on + strand, within GFF2259 at 324.218 kb on - strand, within GFF2259 at 324.277 kb on + strand, within GFF2259 at 324.277 kb on + strand, within GFF2259 at 324.277 kb on + strand, within GFF2259 at 324.277 kb on + strand, within GFF2259 at 324.278 kb on - strand, within GFF2259 at 324.292 kb on + strand, within GFF2259 at 324.292 kb on + strand, within GFF2259 at 324.292 kb on + strand, within GFF2259 at 324.305 kb on - strand, within GFF2259 at 324.352 kb on - strand, within GFF2259 at 324.352 kb on - strand, within GFF2259 at 324.352 kb on - strand, within GFF2259 at 324.507 kb on + strand at 324.507 kb on + strand at 324.508 kb on - strand at 324.516 kb on + strand at 324.516 kb on + strand at 324.516 kb on + strand at 324.517 kb on - strand at 324.517 kb on - strand at 324.517 kb on - strand at 324.517 kb on - strand at 324.517 kb on - strand at 324.517 kb on - strand at 324.517 kb on - strand at 324.517 kb on - strand at 324.520 kb on + strand at 324.520 kb on + strand at 324.521 kb on - strand at 324.521 kb on - strand at 324.521 kb on - strand at 324.522 kb on + strand at 324.522 kb on + strand at 324.522 kb on + strand at 324.522 kb on + strand at 324.617 kb on - strand at 324.617 kb on - strand at 324.626 kb on - strand at 324.663 kb on - strand at 324.663 kb on - strand at 324.670 kb on + strand, within GFF2260 at 324.670 kb on + strand, within GFF2260 at 324.671 kb on - strand, within GFF2260 at 324.671 kb on - strand, within GFF2260 at 324.671 kb on - strand, within GFF2260 at 324.671 kb on - strand, within GFF2260 at 324.671 kb on - strand, within GFF2260 at 324.674 kb on + strand, within GFF2260 at 324.685 kb on + strand, within GFF2260 at 324.804 kb on + strand, within GFF2260 at 324.805 kb on - strand, within GFF2260 at 324.870 kb on - strand, within GFF2260 at 324.873 kb on + strand, within GFF2260 at 324.874 kb on - strand, within GFF2260 at 324.874 kb on - strand, within GFF2260 at 324.926 kb on + strand, within GFF2260 at 324.934 kb on - strand, within GFF2260 at 324.934 kb on - strand, within GFF2260 at 325.050 kb on - strand, within GFF2260 at 325.050 kb on - strand, within GFF2260 at 325.050 kb on - strand, within GFF2260 at 325.067 kb on + strand, within GFF2260 at 325.067 kb on + strand, within GFF2260 at 325.068 kb on - strand, within GFF2260 at 325.068 kb on - strand, within GFF2260 at 325.068 kb on - strand, within GFF2260 at 325.068 kb on - strand, within GFF2260 at 325.099 kb on - strand, within GFF2260 at 325.101 kb on - strand, within GFF2260 at 325.192 kb on + strand, within GFF2260 at 325.226 kb on + strand, within GFF2260 at 325.226 kb on + strand, within GFF2260 at 325.227 kb on - strand, within GFF2260 at 325.235 kb on - strand, within GFF2260 at 325.258 kb on - strand, within GFF2260 at 325.259 kb on + strand, within GFF2260 at 325.260 kb on - strand, within GFF2260 at 325.269 kb on + strand, within GFF2260 at 325.270 kb on - strand, within GFF2260 at 325.270 kb on - strand, within GFF2260 at 325.270 kb on - strand, within GFF2260 at 325.272 kb on + strand, within GFF2260 at 325.273 kb on - strand, within GFF2260 at 325.273 kb on - strand, within GFF2260 at 325.373 kb on - strand, within GFF2260 at 325.422 kb on - strand, within GFF2260 at 325.454 kb on + strand, within GFF2260 at 325.454 kb on + strand, within GFF2260 at 325.454 kb on + strand, within GFF2260 at 325.517 kb on - strand, within GFF2260 at 325.548 kb on + strand, within GFF2260 at 325.548 kb on + strand, within GFF2260 at 325.587 kb on - strand, within GFF2260 at 325.592 kb on + strand, within GFF2260 at 325.593 kb on - strand, within GFF2260 at 325.593 kb on - strand, within GFF2260 at 325.593 kb on - strand, within GFF2260 at 325.603 kb on + strand, within GFF2260 at 325.622 kb on + strand, within GFF2260 at 325.623 kb on - strand, within GFF2260 at 325.645 kb on + strand, within GFF2260 at 325.727 kb on + strand at 325.727 kb on + strand at 325.728 kb on - strand at 325.728 kb on - strand at 325.728 kb on - strand at 325.728 kb on - strand at 325.785 kb on + strand at 325.823 kb on + strand at 325.823 kb on + strand at 325.824 kb on - strand at 325.824 kb on - strand at 325.824 kb on - strand at 325.824 kb on - strand at 325.824 kb on - strand at 325.824 kb on - strand at 325.862 kb on - strand at 325.958 kb on + strand at 326.094 kb on + strand, within GFF2261 at 326.094 kb on + strand, within GFF2261 at 326.094 kb on + strand, within GFF2261 at 326.094 kb on + strand, within GFF2261 at 326.094 kb on + strand, within GFF2261 at 326.094 kb on + strand, within GFF2261 at 326.095 kb on - strand, within GFF2261 at 326.095 kb on - strand, within GFF2261 at 326.095 kb on - strand, within GFF2261 at 326.097 kb on + strand, within GFF2261 at 326.097 kb on + strand, within GFF2261 at 326.098 kb on - strand, within GFF2261 at 326.154 kb on + strand, within GFF2261 at 326.154 kb on + strand, within GFF2261 at 326.155 kb on - strand, within GFF2261 at 326.217 kb on + strand, within GFF2261 at 326.217 kb on + strand, within GFF2261 at 326.273 kb on - strand at 326.303 kb on - strand at 326.310 kb on - strand at 326.323 kb on + strand at 326.341 kb on + strand at 326.369 kb on + strand at 326.369 kb on + strand at 326.370 kb on - strand at 326.375 kb on + strand at 326.375 kb on + strand at 326.375 kb on + strand at 326.375 kb on + strand at 326.376 kb on - strand at 326.376 kb on - strand at 326.376 kb on - strand at 326.376 kb on - strand at 326.376 kb on - strand at 326.386 kb on + strand at 326.387 kb on - strand at 326.410 kb on - strand at 326.502 kb on - strand at 326.546 kb on - strand at 326.547 kb on + strand at 326.548 kb on - strand at 326.552 kb on + strand at 326.553 kb on - strand at 326.553 kb on - strand at 326.553 kb on - strand at 326.554 kb on + strand at 326.554 kb on + strand at 326.555 kb on - strand at 326.568 kb on + strand at 326.587 kb on + strand at 326.587 kb on + strand at 326.587 kb on + strand at 326.588 kb on - strand, within GFF2262 at 326.588 kb on - strand, within GFF2262 at 326.588 kb on - strand, within GFF2262 at 326.588 kb on - strand, within GFF2262 at 326.588 kb on - strand, within GFF2262 at 326.596 kb on + strand, within GFF2262 at 326.630 kb on + strand, within GFF2262 at 326.637 kb on - strand, within GFF2262
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 323,561 + GFF2258 0.63 -0.4 323,561 + GFF2258 0.63 -1.7 323,561 + GFF2258 0.63 +0.0 323,561 + GFF2258 0.63 +0.7 323,561 + GFF2258 0.63 +0.1 323,562 - GFF2258 0.63 +0.1 323,562 - GFF2258 0.63 -1.5 323,562 - GFF2258 0.63 -0.9 323,644 + GFF2258 0.76 +0.1 323,683 - GFF2258 0.81 -1.1 323,810 + -1.0 323,868 + +0.9 323,869 - -1.5 323,887 + GFF2259 0.12 -0.1 323,888 - GFF2259 0.12 +0.0 323,888 - GFF2259 0.12 -1.3 323,888 - GFF2259 0.12 -0.5 323,888 - GFF2259 0.12 +1.0 323,888 - GFF2259 0.12 -0.3 323,905 + GFF2259 0.14 -0.5 323,905 + GFF2259 0.14 -1.4 323,906 - GFF2259 0.15 -1.1 323,910 + GFF2259 0.15 +0.5 323,910 + GFF2259 0.15 -1.0 323,911 - GFF2259 0.15 -1.3 323,924 + GFF2259 0.17 -0.1 323,925 - GFF2259 0.17 -1.5 323,955 + GFF2259 0.22 -1.5 323,956 - GFF2259 0.22 -1.1 323,956 - GFF2259 0.22 +0.0 323,956 - GFF2259 0.22 -1.1 323,988 - GFF2259 0.27 -0.5 324,047 + GFF2259 0.36 -3.3 324,095 + GFF2259 0.43 -2.3 324,106 + GFF2259 0.45 +0.2 324,106 + GFF2259 0.45 +0.6 324,106 + GFF2259 0.45 -1.7 324,106 + GFF2259 0.45 -1.1 324,106 + GFF2259 0.45 +0.4 324,217 + GFF2259 0.62 -0.9 324,218 - GFF2259 0.62 -0.2 324,277 + GFF2259 0.71 -0.3 324,277 + GFF2259 0.71 -0.4 324,277 + GFF2259 0.71 -0.1 324,277 + GFF2259 0.71 -0.8 324,278 - GFF2259 0.71 -0.6 324,292 + GFF2259 0.73 -1.1 324,292 + GFF2259 0.73 -2.0 324,292 + GFF2259 0.73 +0.2 324,305 - GFF2259 0.75 +0.1 324,352 - GFF2259 0.82 -1.1 324,352 - GFF2259 0.82 +0.0 324,352 - GFF2259 0.82 -0.6 324,507 + +0.1 324,507 + -0.2 324,508 - -1.1 324,516 + -2.8 324,516 + -0.3 324,516 + -1.1 324,517 - -1.3 324,517 - -0.9 324,517 - -0.1 324,517 - -1.7 324,517 - -1.0 324,517 - -0.4 324,517 - +0.1 324,517 - -1.5 324,520 + -0.4 324,520 + -0.1 324,521 - +0.4 324,521 - +0.3 324,521 - +0.0 324,522 + -0.7 324,522 + -1.0 324,522 + -1.1 324,522 + -2.6 324,617 - -1.7 324,617 - -1.1 324,626 - -1.1 324,663 - -1.1 324,663 - +0.0 324,670 + GFF2260 0.10 -1.1 324,670 + GFF2260 0.10 -2.0 324,671 - GFF2260 0.10 -2.1 324,671 - GFF2260 0.10 -1.1 324,671 - GFF2260 0.10 -0.5 324,671 - GFF2260 0.10 -1.1 324,671 - GFF2260 0.10 -1.1 324,674 + GFF2260 0.10 -2.0 324,685 + GFF2260 0.11 -0.7 324,804 + GFF2260 0.21 -1.5 324,805 - GFF2260 0.21 +0.4 324,870 - GFF2260 0.26 -1.5 324,873 + GFF2260 0.26 -0.1 324,874 - GFF2260 0.26 -1.0 324,874 - GFF2260 0.26 -0.5 324,926 + GFF2260 0.31 -1.3 324,934 - GFF2260 0.31 +0.9 324,934 - GFF2260 0.31 -0.1 325,050 - GFF2260 0.41 -2.3 325,050 - GFF2260 0.41 -0.7 325,050 - GFF2260 0.41 -1.1 325,067 + GFF2260 0.42 -1.3 325,067 + GFF2260 0.42 +0.9 325,068 - GFF2260 0.42 -0.9 325,068 - GFF2260 0.42 -1.7 325,068 - GFF2260 0.42 -1.1 325,068 - GFF2260 0.42 -0.7 325,099 - GFF2260 0.44 -1.7 325,101 - GFF2260 0.45 +0.1 325,192 + GFF2260 0.52 -0.3 325,226 + GFF2260 0.55 -1.8 325,226 + GFF2260 0.55 +0.6 325,227 - GFF2260 0.55 +0.0 325,235 - GFF2260 0.55 -1.5 325,258 - GFF2260 0.57 -2.0 325,259 + GFF2260 0.57 -2.0 325,260 - GFF2260 0.57 -0.1 325,269 + GFF2260 0.58 -1.1 325,270 - GFF2260 0.58 +0.0 325,270 - GFF2260 0.58 +0.4 325,270 - GFF2260 0.58 -0.1 325,272 + GFF2260 0.58 -0.3 325,273 - GFF2260 0.58 -1.1 325,273 - GFF2260 0.58 -0.5 325,373 - GFF2260 0.66 -0.4 325,422 - GFF2260 0.70 +0.4 325,454 + GFF2260 0.73 -1.1 325,454 + GFF2260 0.73 -1.4 325,454 + GFF2260 0.73 -0.7 325,517 - GFF2260 0.78 -0.5 325,548 + GFF2260 0.80 +0.3 325,548 + GFF2260 0.80 -1.3 325,587 - GFF2260 0.84 -0.7 325,592 + GFF2260 0.84 -1.1 325,593 - GFF2260 0.84 -0.6 325,593 - GFF2260 0.84 -0.7 325,593 - GFF2260 0.84 -0.4 325,603 + GFF2260 0.85 -1.1 325,622 + GFF2260 0.86 -1.6 325,623 - GFF2260 0.86 -1.7 325,645 + GFF2260 0.88 -1.1 325,727 + +0.3 325,727 + +0.4 325,728 - -1.1 325,728 - -1.0 325,728 - +0.1 325,728 - -2.3 325,785 + -1.1 325,823 + -1.3 325,823 + +0.5 325,824 - -1.6 325,824 - -0.1 325,824 - -1.5 325,824 - -0.5 325,824 - -1.0 325,824 - -0.5 325,862 - -0.2 325,958 + -2.0 326,094 + GFF2261 0.34 -0.8 326,094 + GFF2261 0.34 -0.3 326,094 + GFF2261 0.34 -0.7 326,094 + GFF2261 0.34 +0.4 326,094 + GFF2261 0.34 -1.5 326,094 + GFF2261 0.34 -1.0 326,095 - GFF2261 0.34 -0.1 326,095 - GFF2261 0.34 -0.1 326,095 - GFF2261 0.34 -1.5 326,097 + GFF2261 0.35 -0.9 326,097 + GFF2261 0.35 +0.7 326,098 - GFF2261 0.35 -0.5 326,154 + GFF2261 0.53 -0.9 326,154 + GFF2261 0.53 -0.3 326,155 - GFF2261 0.53 -0.4 326,217 + GFF2261 0.73 -1.1 326,217 + GFF2261 0.73 -0.3 326,273 - +0.3 326,303 - -1.7 326,310 - -0.7 326,323 + -0.1 326,341 + -0.1 326,369 + -0.1 326,369 + -0.7 326,370 - -1.6 326,375 + +0.1 326,375 + -1.1 326,375 + -0.1 326,375 + +0.1 326,376 - -0.1 326,376 - -0.1 326,376 - -0.3 326,376 - -1.3 326,376 - -1.3 326,386 + -1.7 326,387 - -1.1 326,410 - -0.7 326,502 - -0.3 326,546 - -0.0 326,547 + -1.1 326,548 - -2.0 326,552 + +0.6 326,553 - -1.6 326,553 - -0.7 326,553 - -0.1 326,554 + -0.7 326,554 + -1.5 326,555 - -0.9 326,568 + -2.0 326,587 + -0.1 326,587 + +0.4 326,587 + +0.0 326,588 - GFF2262 0.10 -0.3 326,588 - GFF2262 0.10 -0.8 326,588 - GFF2262 0.10 -0.3 326,588 - GFF2262 0.10 -0.7 326,588 - GFF2262 0.10 -0.1 326,596 + GFF2262 0.10 -0.1 326,630 + GFF2262 0.12 -0.1 326,637 - GFF2262 0.12 +0.4
Or see this region's nucleotide sequence