Strain Fitness in Methylophilus sp. DMC18 around GFF2201

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2200 and GFF2201 are separated by 102 nucleotidesGFF2201 and GFF2202 overlap by 1 nucleotides GFF2200 - Multidrug resistance protein MdtC, at 249,544 to 252,615 GFF2200 GFF2201 - hypothetical protein, at 252,718 to 253,146 GFF2201 GFF2202 - Quinolinate synthase A, at 253,146 to 254,255 GFF2202 Position (kb) 252 253 254Strain fitness (log2 ratio) -2 -1 0 1at 251.721 kb on + strand, within GFF2200at 251.721 kb on + strand, within GFF2200at 251.721 kb on + strand, within GFF2200at 251.742 kb on + strand, within GFF2200at 251.807 kb on + strand, within GFF2200at 251.808 kb on - strand, within GFF2200at 251.808 kb on - strand, within GFF2200at 251.923 kb on - strand, within GFF2200at 251.937 kb on + strand, within GFF2200at 251.937 kb on + strand, within GFF2200at 251.996 kb on + strand, within GFF2200at 251.996 kb on + strand, within GFF2200at 251.996 kb on + strand, within GFF2200at 251.996 kb on + strand, within GFF2200at 252.124 kb on + strand, within GFF2200at 252.124 kb on + strand, within GFF2200at 252.124 kb on + strand, within GFF2200at 252.124 kb on + strand, within GFF2200at 252.124 kb on + strand, within GFF2200at 252.125 kb on - strand, within GFF2200at 252.125 kb on - strand, within GFF2200at 252.125 kb on - strand, within GFF2200at 252.125 kb on - strand, within GFF2200at 252.125 kb on - strand, within GFF2200at 252.125 kb on - strand, within GFF2200at 252.125 kb on - strand, within GFF2200at 252.125 kb on - strand, within GFF2200at 252.313 kb on + strandat 252.313 kb on + strandat 252.314 kb on - strandat 252.314 kb on - strandat 252.378 kb on + strandat 252.378 kb on + strandat 252.378 kb on + strandat 252.379 kb on - strandat 252.462 kb on + strandat 252.503 kb on + strandat 252.503 kb on + strandat 252.504 kb on - strandat 252.507 kb on + strandat 252.507 kb on + strandat 252.547 kb on + strandat 252.547 kb on + strandat 252.547 kb on + strandat 252.547 kb on + strandat 252.547 kb on + strandat 252.547 kb on + strandat 252.547 kb on + strandat 252.548 kb on - strandat 252.548 kb on - strandat 252.548 kb on - strandat 252.548 kb on - strandat 252.553 kb on + strandat 252.553 kb on + strandat 252.553 kb on + strandat 252.554 kb on - strandat 252.554 kb on - strandat 252.554 kb on - strandat 252.554 kb on - strandat 252.554 kb on - strandat 252.566 kb on + strandat 252.567 kb on - strandat 252.567 kb on - strandat 252.567 kb on - strandat 252.588 kb on - strandat 252.601 kb on - strandat 252.601 kb on - strandat 252.613 kb on + strandat 252.614 kb on - strandat 252.614 kb on - strandat 252.639 kb on - strandat 252.639 kb on - strandat 252.639 kb on - strandat 252.667 kb on - strandat 252.667 kb on - strandat 252.686 kb on + strandat 252.687 kb on - strandat 252.693 kb on + strandat 252.693 kb on + strandat 252.694 kb on - strandat 252.694 kb on - strandat 252.694 kb on - strandat 252.719 kb on + strandat 252.720 kb on - strandat 252.720 kb on - strandat 252.720 kb on - strandat 252.723 kb on + strandat 252.724 kb on - strandat 252.748 kb on - strandat 252.748 kb on - strandat 252.748 kb on - strandat 252.752 kb on - strandat 252.752 kb on - strandat 252.752 kb on - strandat 252.763 kb on + strand, within GFF2201at 252.764 kb on - strand, within GFF2201at 252.764 kb on - strand, within GFF2201at 252.790 kb on - strand, within GFF2201at 252.790 kb on - strand, within GFF2201at 252.882 kb on + strand, within GFF2201at 252.883 kb on - strand, within GFF2201at 252.895 kb on - strand, within GFF2201at 252.931 kb on + strand, within GFF2201at 252.931 kb on + strand, within GFF2201at 252.932 kb on - strand, within GFF2201at 253.046 kb on + strand, within GFF2201at 253.047 kb on - strand, within GFF2201at 253.047 kb on - strand, within GFF2201at 253.047 kb on - strand, within GFF2201

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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251,721 + GFF2200 0.71 -0.3
251,721 + GFF2200 0.71 -1.5
251,721 + GFF2200 0.71 -0.3
251,742 + GFF2200 0.72 +0.2
251,807 + GFF2200 0.74 -0.8
251,808 - GFF2200 0.74 +0.2
251,808 - GFF2200 0.74 -0.5
251,923 - GFF2200 0.77 +0.1
251,937 + GFF2200 0.78 +0.1
251,937 + GFF2200 0.78 -0.8
251,996 + GFF2200 0.80 +0.7
251,996 + GFF2200 0.80 -2.1
251,996 + GFF2200 0.80 -1.8
251,996 + GFF2200 0.80 -1.5
252,124 + GFF2200 0.84 -0.1
252,124 + GFF2200 0.84 -0.1
252,124 + GFF2200 0.84 -0.2
252,124 + GFF2200 0.84 -0.6
252,124 + GFF2200 0.84 +0.1
252,125 - GFF2200 0.84 -1.5
252,125 - GFF2200 0.84 -0.7
252,125 - GFF2200 0.84 +0.4
252,125 - GFF2200 0.84 -0.1
252,125 - GFF2200 0.84 -1.7
252,125 - GFF2200 0.84 -1.1
252,125 - GFF2200 0.84 -0.5
252,125 - GFF2200 0.84 -2.1
252,313 + -0.1
252,313 + -1.1
252,314 - -0.5
252,314 - -0.9
252,378 + -1.0
252,378 + -1.6
252,378 + -0.1
252,379 - +0.2
252,462 + -0.1
252,503 + -0.0
252,503 + -1.8
252,504 - +0.5
252,507 + -0.7
252,507 + -1.5
252,547 + -0.5
252,547 + +0.0
252,547 + -0.3
252,547 + -0.2
252,547 + -1.0
252,547 + +0.9
252,547 + +0.9
252,548 - -2.0
252,548 - -1.3
252,548 - +0.4
252,548 - -0.5
252,553 + -0.7
252,553 + -0.6
252,553 + -1.1
252,554 - -1.1
252,554 - -2.7
252,554 - -0.3
252,554 - -0.1
252,554 - -0.7
252,566 + -0.5
252,567 - -0.5
252,567 - -1.0
252,567 - -0.3
252,588 - -0.1
252,601 - +0.3
252,601 - -1.7
252,613 + -0.4
252,614 - -1.7
252,614 - +0.6
252,639 - -0.1
252,639 - -0.1
252,639 - +0.4
252,667 - -2.1
252,667 - -1.7
252,686 + -0.6
252,687 - -0.7
252,693 + -0.1
252,693 + -0.5
252,694 - -1.1
252,694 - -0.7
252,694 - +0.4
252,719 + -1.5
252,720 - +0.3
252,720 - +0.2
252,720 - -0.8
252,723 + -1.1
252,724 - -2.2
252,748 - -0.9
252,748 - -1.0
252,748 - -2.1
252,752 - +0.0
252,752 - -0.1
252,752 - -1.6
252,763 + GFF2201 0.10 +0.9
252,764 - GFF2201 0.11 -0.1
252,764 - GFF2201 0.11 -0.5
252,790 - GFF2201 0.17 -0.3
252,790 - GFF2201 0.17 +0.9
252,882 + GFF2201 0.38 +1.5
252,883 - GFF2201 0.38 -0.1
252,895 - GFF2201 0.41 -1.1
252,931 + GFF2201 0.50 -1.4
252,931 + GFF2201 0.50 +0.3
252,932 - GFF2201 0.50 -1.4
253,046 + GFF2201 0.76 -1.1
253,047 - GFF2201 0.77 -1.0
253,047 - GFF2201 0.77 +0.3
253,047 - GFF2201 0.77 +0.9

Or see this region's nucleotide sequence