Strain Fitness in Methylophilus sp. DMC18 around GFF2175

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2174 and GFF2175 are separated by 12 nucleotidesGFF2175 and GFF2176 are separated by 58 nucleotides GFF2174 - Glutathione synthetase, at 223,601 to 224,536 GFF2174 GFF2175 - hypothetical protein, at 224,549 to 225,874 GFF2175 GFF2176 - Lipoyl synthase, at 225,933 to 226,913 GFF2176 Position (kb) 224 225 226Strain fitness (log2 ratio) -3 -2 -1 0 1at 223.572 kb on + strandat 223.572 kb on + strandat 223.572 kb on + strandat 223.572 kb on + strandat 223.573 kb on - strandat 223.573 kb on - strandat 223.573 kb on - strandat 223.573 kb on - strandat 223.573 kb on - strandat 223.945 kb on + strand, within GFF2174at 223.946 kb on - strand, within GFF2174at 223.947 kb on + strand, within GFF2174at 224.004 kb on + strand, within GFF2174at 224.005 kb on - strand, within GFF2174at 224.009 kb on - strand, within GFF2174at 224.009 kb on - strand, within GFF2174at 224.169 kb on - strand, within GFF2174at 224.247 kb on + strand, within GFF2174at 224.247 kb on + strand, within GFF2174at 224.247 kb on + strand, within GFF2174at 224.247 kb on + strand, within GFF2174at 224.248 kb on - strand, within GFF2174at 224.254 kb on + strand, within GFF2174at 224.254 kb on + strand, within GFF2174at 224.254 kb on + strand, within GFF2174at 224.254 kb on + strand, within GFF2174at 224.255 kb on - strand, within GFF2174at 224.255 kb on - strand, within GFF2174at 224.255 kb on - strand, within GFF2174at 224.255 kb on - strand, within GFF2174at 224.255 kb on - strand, within GFF2174at 224.255 kb on - strand, within GFF2174at 224.256 kb on + strand, within GFF2174at 224.257 kb on - strand, within GFF2174at 224.257 kb on - strand, within GFF2174at 224.263 kb on - strand, within GFF2174at 224.287 kb on + strand, within GFF2174at 224.436 kb on - strand, within GFF2174at 224.491 kb on - strandat 224.551 kb on - strandat 224.643 kb on + strandat 224.644 kb on - strandat 224.811 kb on + strand, within GFF2175at 224.812 kb on - strand, within GFF2175at 225.037 kb on - strand, within GFF2175at 225.152 kb on + strand, within GFF2175at 225.208 kb on - strand, within GFF2175at 225.208 kb on - strand, within GFF2175at 225.208 kb on - strand, within GFF2175at 225.254 kb on + strand, within GFF2175at 225.255 kb on - strand, within GFF2175at 225.315 kb on + strand, within GFF2175at 225.450 kb on - strand, within GFF2175at 225.542 kb on - strand, within GFF2175at 225.550 kb on - strand, within GFF2175at 225.552 kb on + strand, within GFF2175at 225.553 kb on - strand, within GFF2175at 225.553 kb on - strand, within GFF2175at 225.553 kb on - strand, within GFF2175at 225.848 kb on + strandat 225.860 kb on + strandat 225.861 kb on - strandat 225.893 kb on + strandat 225.893 kb on + strandat 225.894 kb on - strandat 225.894 kb on - strandat 225.898 kb on + strandat 225.899 kb on - strandat 225.899 kb on - strandat 225.934 kb on + strandat 225.935 kb on - strandat 225.935 kb on - strandat 225.971 kb on - strandat 225.971 kb on - strandat 226.035 kb on - strand, within GFF2176at 226.064 kb on - strand, within GFF2176at 226.064 kb on - strand, within GFF2176at 226.064 kb on - strand, within GFF2176at 226.064 kb on - strand, within GFF2176at 226.103 kb on - strand, within GFF2176at 226.103 kb on - strand, within GFF2176at 226.103 kb on - strand, within GFF2176at 226.103 kb on - strand, within GFF2176at 226.223 kb on - strand, within GFF2176at 226.292 kb on - strand, within GFF2176at 226.292 kb on - strand, within GFF2176at 226.317 kb on - strand, within GFF2176at 226.508 kb on - strand, within GFF2176at 226.508 kb on - strand, within GFF2176at 226.508 kb on - strand, within GFF2176

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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223,572 + -0.3
223,572 + +0.5
223,572 + -0.4
223,572 + +0.4
223,573 - -0.1
223,573 - -2.0
223,573 - +0.7
223,573 - -0.1
223,573 - -0.5
223,945 + GFF2174 0.37 -1.5
223,946 - GFF2174 0.37 -1.2
223,947 + GFF2174 0.37 -0.1
224,004 + GFF2174 0.43 +0.4
224,005 - GFF2174 0.43 -2.0
224,009 - GFF2174 0.44 +0.0
224,009 - GFF2174 0.44 -2.0
224,169 - GFF2174 0.61 -1.7
224,247 + GFF2174 0.69 -1.1
224,247 + GFF2174 0.69 -1.1
224,247 + GFF2174 0.69 -1.0
224,247 + GFF2174 0.69 -1.1
224,248 - GFF2174 0.69 -0.6
224,254 + GFF2174 0.70 -0.5
224,254 + GFF2174 0.70 -1.0
224,254 + GFF2174 0.70 -1.1
224,254 + GFF2174 0.70 -1.7
224,255 - GFF2174 0.70 -1.1
224,255 - GFF2174 0.70 -1.5
224,255 - GFF2174 0.70 -1.1
224,255 - GFF2174 0.70 -2.6
224,255 - GFF2174 0.70 -1.1
224,255 - GFF2174 0.70 -1.0
224,256 + GFF2174 0.70 -0.5
224,257 - GFF2174 0.70 -2.0
224,257 - GFF2174 0.70 -1.5
224,263 - GFF2174 0.71 -2.1
224,287 + GFF2174 0.73 -0.4
224,436 - GFF2174 0.89 -0.9
224,491 - -1.1
224,551 - -0.5
224,643 + -1.1
224,644 - -1.1
224,811 + GFF2175 0.20 -1.5
224,812 - GFF2175 0.20 -1.1
225,037 - GFF2175 0.37 -1.1
225,152 + GFF2175 0.45 -1.1
225,208 - GFF2175 0.50 -1.7
225,208 - GFF2175 0.50 -1.1
225,208 - GFF2175 0.50 -1.5
225,254 + GFF2175 0.53 -1.3
225,255 - GFF2175 0.53 -1.1
225,315 + GFF2175 0.58 -1.1
225,450 - GFF2175 0.68 -1.1
225,542 - GFF2175 0.75 -1.1
225,550 - GFF2175 0.75 -1.1
225,552 + GFF2175 0.76 -1.5
225,553 - GFF2175 0.76 -1.1
225,553 - GFF2175 0.76 -1.1
225,553 - GFF2175 0.76 -1.1
225,848 + -3.1
225,860 + -0.3
225,861 - -1.1
225,893 + -1.0
225,893 + +0.3
225,894 - -0.2
225,894 - -0.1
225,898 + -2.6
225,899 - -0.6
225,899 - -0.7
225,934 + -0.1
225,935 - -2.0
225,935 - -2.8
225,971 - -2.3
225,971 - -3.1
226,035 - GFF2176 0.10 -1.5
226,064 - GFF2176 0.13 -1.5
226,064 - GFF2176 0.13 -1.7
226,064 - GFF2176 0.13 -1.1
226,064 - GFF2176 0.13 -1.5
226,103 - GFF2176 0.17 -2.3
226,103 - GFF2176 0.17 +0.4
226,103 - GFF2176 0.17 -0.7
226,103 - GFF2176 0.17 -2.0
226,223 - GFF2176 0.30 -1.1
226,292 - GFF2176 0.37 -0.0
226,292 - GFF2176 0.37 -2.1
226,317 - GFF2176 0.39 -3.7
226,508 - GFF2176 0.59 -1.9
226,508 - GFF2176 0.59 -1.5
226,508 - GFF2176 0.59 -1.5

Or see this region's nucleotide sequence