Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2135 and GFF2136 are separated by 12 nucleotides GFF2136 and GFF2137 are separated by 1 nucleotides GFF2137 and GFF2138 are separated by 8 nucleotides GFF2138 and GFF2139 are separated by 156 nucleotides
GFF2135 - hypothetical protein, at 182,509 to 183,426
GFF2135
GFF2136 - Ribonuclease PH, at 183,439 to 184,158
GFF2136
GFF2137 - dITP/XTP pyrophosphatase, at 184,160 to 184,783
GFF2137
GFF2138 - hypothetical protein, at 184,792 to 185,007
GFF2138
GFF2139 - ATP-dependent DNA helicase RecQ, at 185,164 to 186,990
GFF2139
Position (kb) 184
185 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 183.195 kb on + strand, within GFF2135 at 183.195 kb on + strand, within GFF2135 at 183.195 kb on + strand, within GFF2135 at 183.198 kb on + strand, within GFF2135 at 183.198 kb on + strand, within GFF2135 at 183.198 kb on + strand, within GFF2135 at 183.199 kb on - strand, within GFF2135 at 183.199 kb on - strand, within GFF2135 at 183.210 kb on + strand, within GFF2135 at 183.210 kb on + strand, within GFF2135 at 183.281 kb on + strand, within GFF2135 at 183.282 kb on - strand, within GFF2135 at 183.344 kb on + strand at 183.344 kb on + strand at 183.344 kb on + strand at 183.344 kb on + strand at 183.344 kb on + strand at 183.344 kb on + strand at 183.344 kb on + strand at 183.345 kb on - strand at 183.345 kb on - strand at 183.386 kb on + strand at 183.387 kb on - strand at 183.420 kb on + strand at 183.420 kb on + strand at 183.421 kb on - strand at 183.424 kb on + strand at 183.424 kb on + strand at 183.425 kb on - strand at 183.425 kb on - strand at 183.425 kb on - strand at 183.425 kb on - strand at 183.435 kb on - strand at 183.435 kb on - strand at 183.499 kb on + strand at 183.499 kb on + strand at 183.499 kb on + strand at 183.500 kb on - strand at 183.500 kb on - strand at 183.531 kb on + strand, within GFF2136 at 183.558 kb on + strand, within GFF2136 at 183.570 kb on - strand, within GFF2136 at 183.600 kb on + strand, within GFF2136 at 183.601 kb on - strand, within GFF2136 at 183.649 kb on - strand, within GFF2136 at 183.841 kb on + strand, within GFF2136 at 183.842 kb on - strand, within GFF2136 at 183.970 kb on + strand, within GFF2136 at 183.970 kb on + strand, within GFF2136 at 183.971 kb on - strand, within GFF2136 at 183.972 kb on + strand, within GFF2136 at 184.156 kb on + strand at 184.156 kb on + strand at 184.156 kb on + strand at 184.156 kb on + strand at 184.157 kb on - strand at 184.157 kb on - strand at 184.299 kb on - strand, within GFF2137 at 184.420 kb on - strand, within GFF2137 at 184.433 kb on + strand, within GFF2137 at 184.434 kb on - strand, within GFF2137 at 184.434 kb on - strand, within GFF2137 at 184.489 kb on + strand, within GFF2137 at 184.489 kb on + strand, within GFF2137 at 184.490 kb on - strand, within GFF2137 at 184.599 kb on + strand, within GFF2137 at 184.600 kb on - strand, within GFF2137 at 184.995 kb on + strand at 184.995 kb on + strand at 184.995 kb on + strand at 184.995 kb on + strand at 185.005 kb on + strand at 185.005 kb on + strand at 185.006 kb on - strand at 185.020 kb on + strand at 185.020 kb on + strand at 185.037 kb on + strand at 185.076 kb on - strand at 185.085 kb on - strand at 185.137 kb on + strand at 185.138 kb on - strand at 185.138 kb on - strand at 185.152 kb on + strand at 185.153 kb on - strand at 185.153 kb on - strand at 185.209 kb on + strand at 185.209 kb on + strand at 185.209 kb on + strand at 185.243 kb on + strand at 185.311 kb on + strand at 185.311 kb on + strand at 185.495 kb on + strand, within GFF2139 at 185.495 kb on + strand, within GFF2139 at 185.495 kb on + strand, within GFF2139 at 185.495 kb on + strand, within GFF2139 at 185.495 kb on + strand, within GFF2139 at 185.496 kb on - strand, within GFF2139 at 185.498 kb on + strand, within GFF2139 at 185.500 kb on + strand, within GFF2139 at 185.500 kb on + strand, within GFF2139 at 185.500 kb on + strand, within GFF2139 at 185.500 kb on + strand, within GFF2139 at 185.500 kb on + strand, within GFF2139 at 185.500 kb on + strand, within GFF2139 at 185.501 kb on - strand, within GFF2139 at 185.501 kb on - strand, within GFF2139 at 185.501 kb on - strand, within GFF2139 at 185.501 kb on - strand, within GFF2139 at 185.501 kb on - strand, within GFF2139 at 185.501 kb on - strand, within GFF2139 at 185.537 kb on + strand, within GFF2139 at 185.638 kb on + strand, within GFF2139 at 185.638 kb on + strand, within GFF2139 at 185.639 kb on - strand, within GFF2139 at 185.655 kb on - strand, within GFF2139
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 183,195 + GFF2135 0.75 -0.6 183,195 + GFF2135 0.75 -0.8 183,195 + GFF2135 0.75 +1.1 183,198 + GFF2135 0.75 -0.1 183,198 + GFF2135 0.75 -0.1 183,198 + GFF2135 0.75 -1.1 183,199 - GFF2135 0.75 -0.5 183,199 - GFF2135 0.75 -0.7 183,210 + GFF2135 0.76 -0.4 183,210 + GFF2135 0.76 -0.6 183,281 + GFF2135 0.84 -1.1 183,282 - GFF2135 0.84 -0.7 183,344 + -2.5 183,344 + +0.3 183,344 + +0.3 183,344 + -1.1 183,344 + -2.3 183,344 + +0.6 183,344 + -0.9 183,345 - -0.3 183,345 - -0.1 183,386 + +0.0 183,387 - -0.5 183,420 + -2.0 183,420 + -1.1 183,421 - -0.1 183,424 + +0.1 183,424 + +0.0 183,425 - -0.7 183,425 - -1.1 183,425 - -0.9 183,425 - -0.1 183,435 - -2.5 183,435 - +0.9 183,499 + -0.4 183,499 + -0.3 183,499 + -2.1 183,500 - +0.1 183,500 - +0.2 183,531 + GFF2136 0.13 +0.9 183,558 + GFF2136 0.17 -1.5 183,570 - GFF2136 0.18 -1.7 183,600 + GFF2136 0.22 -1.6 183,601 - GFF2136 0.23 -0.4 183,649 - GFF2136 0.29 -1.1 183,841 + GFF2136 0.56 -1.7 183,842 - GFF2136 0.56 -1.7 183,970 + GFF2136 0.74 -3.1 183,970 + GFF2136 0.74 -0.4 183,971 - GFF2136 0.74 -1.5 183,972 + GFF2136 0.74 +0.5 184,156 + -0.1 184,156 + -1.1 184,156 + -0.3 184,156 + +0.5 184,157 - -2.1 184,157 - -0.5 184,299 - GFF2137 0.22 -1.0 184,420 - GFF2137 0.42 -1.8 184,433 + GFF2137 0.44 -1.1 184,434 - GFF2137 0.44 -0.1 184,434 - GFF2137 0.44 -0.1 184,489 + GFF2137 0.53 -0.7 184,489 + GFF2137 0.53 +0.6 184,490 - GFF2137 0.53 -1.9 184,599 + GFF2137 0.70 -0.7 184,600 - GFF2137 0.71 -0.9 184,995 + +1.3 184,995 + -1.1 184,995 + -1.1 184,995 + -1.5 185,005 + +0.5 185,005 + -1.0 185,006 - -1.1 185,020 + -0.9 185,020 + -0.1 185,037 + -0.4 185,076 - -0.2 185,085 - -1.1 185,137 + +0.4 185,138 - -1.5 185,138 - +0.9 185,152 + -0.3 185,153 - -0.5 185,153 - -0.6 185,209 + -1.0 185,209 + +0.5 185,209 + -1.0 185,243 + -1.5 185,311 + +0.4 185,311 + +0.4 185,495 + GFF2139 0.18 -0.1 185,495 + GFF2139 0.18 +0.9 185,495 + GFF2139 0.18 -1.7 185,495 + GFF2139 0.18 -0.5 185,495 + GFF2139 0.18 +1.4 185,496 - GFF2139 0.18 -0.8 185,498 + GFF2139 0.18 +0.0 185,500 + GFF2139 0.18 -0.8 185,500 + GFF2139 0.18 -0.1 185,500 + GFF2139 0.18 -1.0 185,500 + GFF2139 0.18 +0.1 185,500 + GFF2139 0.18 -1.5 185,500 + GFF2139 0.18 +0.3 185,501 - GFF2139 0.18 -0.1 185,501 - GFF2139 0.18 -0.6 185,501 - GFF2139 0.18 -1.1 185,501 - GFF2139 0.18 -1.1 185,501 - GFF2139 0.18 -0.1 185,501 - GFF2139 0.18 +0.1 185,537 + GFF2139 0.20 -1.5 185,638 + GFF2139 0.26 -0.5 185,638 + GFF2139 0.26 +0.4 185,639 - GFF2139 0.26 +0.9 185,655 - GFF2139 0.27 +0.0
Or see this region's nucleotide sequence