Strain Fitness in Methylophilus sp. DMC18 around GFF2113

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2112 and GFF2113 are separated by 162 nucleotidesGFF2113 and GFF2114 are separated by 25 nucleotidesGFF2114 and GFF2115 are separated by 63 nucleotides GFF2112 - Glutathione-regulated potassium-efflux system protein KefC, at 158,821 to 160,593 GFF2112 GFF2113 - hypothetical protein, at 160,756 to 161,127 GFF2113 GFF2114 - Carboxylesterase NlhH, at 161,153 to 161,884 GFF2114 GFF2115 - Glucose 1-dehydrogenase 2, at 161,948 to 162,697 GFF2115 Position (kb) 160 161 162Strain fitness (log2 ratio) -2 -1 0 1at 159.775 kb on + strand, within GFF2112at 159.819 kb on - strand, within GFF2112at 159.862 kb on - strand, within GFF2112at 159.862 kb on - strand, within GFF2112at 159.919 kb on + strand, within GFF2112at 159.920 kb on - strand, within GFF2112at 160.008 kb on + strand, within GFF2112at 160.009 kb on - strand, within GFF2112at 160.169 kb on - strand, within GFF2112at 160.169 kb on - strand, within GFF2112at 160.267 kb on + strand, within GFF2112at 160.267 kb on + strand, within GFF2112at 160.267 kb on + strand, within GFF2112at 160.267 kb on + strand, within GFF2112at 160.268 kb on - strand, within GFF2112at 160.268 kb on - strand, within GFF2112at 160.268 kb on - strand, within GFF2112at 160.307 kb on - strand, within GFF2112at 160.351 kb on + strand, within GFF2112at 160.351 kb on + strand, within GFF2112at 160.352 kb on - strand, within GFF2112at 160.396 kb on + strand, within GFF2112at 160.397 kb on - strand, within GFF2112at 160.397 kb on - strand, within GFF2112at 160.536 kb on + strandat 160.537 kb on - strandat 160.553 kb on + strandat 160.553 kb on + strandat 160.553 kb on + strandat 160.553 kb on + strandat 160.554 kb on - strandat 160.602 kb on + strandat 160.603 kb on - strandat 160.611 kb on + strandat 160.611 kb on + strandat 160.612 kb on - strandat 160.624 kb on - strandat 160.624 kb on - strandat 160.624 kb on - strandat 160.651 kb on + strandat 160.677 kb on + strandat 160.683 kb on + strandat 160.683 kb on + strandat 160.683 kb on + strandat 160.683 kb on + strandat 160.684 kb on - strandat 160.684 kb on - strandat 160.684 kb on - strandat 160.684 kb on - strandat 160.684 kb on - strandat 160.684 kb on - strandat 160.684 kb on - strandat 160.684 kb on - strandat 160.684 kb on - strandat 160.684 kb on - strandat 160.685 kb on + strandat 160.685 kb on + strandat 160.685 kb on + strandat 160.685 kb on + strandat 160.685 kb on + strandat 160.685 kb on + strandat 160.685 kb on + strandat 160.686 kb on - strandat 160.686 kb on - strandat 160.686 kb on - strandat 160.686 kb on - strandat 160.686 kb on - strandat 160.716 kb on - strandat 160.749 kb on - strandat 160.756 kb on - strandat 160.796 kb on + strand, within GFF2113at 160.797 kb on - strand, within GFF2113at 160.797 kb on - strand, within GFF2113at 160.799 kb on + strand, within GFF2113at 160.800 kb on - strand, within GFF2113at 160.817 kb on + strand, within GFF2113at 160.818 kb on - strand, within GFF2113at 160.818 kb on - strand, within GFF2113at 160.818 kb on - strand, within GFF2113at 160.875 kb on + strand, within GFF2113at 160.906 kb on + strand, within GFF2113at 161.120 kb on - strandat 161.120 kb on - strandat 161.120 kb on - strandat 161.125 kb on + strandat 161.135 kb on + strandat 161.135 kb on + strandat 161.136 kb on - strandat 161.154 kb on + strandat 161.211 kb on - strandat 161.211 kb on - strandat 161.211 kb on - strandat 161.225 kb on + strandat 161.225 kb on + strandat 161.225 kb on + strandat 161.225 kb on + strandat 161.226 kb on - strandat 161.226 kb on - strandat 161.226 kb on - strandat 161.226 kb on - strandat 161.244 kb on - strand, within GFF2114at 161.247 kb on - strand, within GFF2114at 161.260 kb on - strand, within GFF2114at 161.356 kb on - strand, within GFF2114at 161.356 kb on - strand, within GFF2114at 161.356 kb on - strand, within GFF2114at 161.356 kb on - strand, within GFF2114at 161.389 kb on - strand, within GFF2114at 161.524 kb on - strand, within GFF2114at 161.573 kb on + strand, within GFF2114at 161.573 kb on + strand, within GFF2114at 161.574 kb on - strand, within GFF2114at 161.574 kb on - strand, within GFF2114at 161.603 kb on + strand, within GFF2114at 161.604 kb on - strand, within GFF2114at 161.640 kb on + strand, within GFF2114at 161.651 kb on + strand, within GFF2114at 161.651 kb on + strand, within GFF2114at 161.651 kb on + strand, within GFF2114at 161.651 kb on + strand, within GFF2114at 161.652 kb on - strand, within GFF2114at 161.652 kb on - strand, within GFF2114at 161.652 kb on - strand, within GFF2114at 161.652 kb on - strand, within GFF2114at 161.652 kb on - strand, within GFF2114at 161.653 kb on + strand, within GFF2114at 161.653 kb on + strand, within GFF2114at 161.653 kb on + strand, within GFF2114at 161.693 kb on + strand, within GFF2114at 161.693 kb on + strand, within GFF2114at 161.693 kb on + strand, within GFF2114at 161.694 kb on - strand, within GFF2114at 161.694 kb on - strand, within GFF2114at 161.694 kb on - strand, within GFF2114at 161.694 kb on - strand, within GFF2114at 161.694 kb on - strand, within GFF2114at 161.699 kb on + strand, within GFF2114at 161.699 kb on + strand, within GFF2114at 161.700 kb on - strand, within GFF2114at 161.700 kb on - strand, within GFF2114at 161.765 kb on - strand, within GFF2114at 161.889 kb on + strandat 161.889 kb on + strandat 161.890 kb on - strandat 161.890 kb on - strandat 161.890 kb on - strandat 161.994 kb on + strandat 162.034 kb on + strand, within GFF2115at 162.034 kb on + strand, within GFF2115at 162.078 kb on + strand, within GFF2115at 162.078 kb on + strand, within GFF2115at 162.079 kb on - strand, within GFF2115at 162.079 kb on - strand, within GFF2115at 162.116 kb on - strand, within GFF2115

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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159,775 + GFF2112 0.54 -0.0
159,819 - GFF2112 0.56 -1.2
159,862 - GFF2112 0.59 -1.4
159,862 - GFF2112 0.59 -0.0
159,919 + GFF2112 0.62 -0.6
159,920 - GFF2112 0.62 +1.7
160,008 + GFF2112 0.67 -0.5
160,009 - GFF2112 0.67 -1.1
160,169 - GFF2112 0.76 -0.5
160,169 - GFF2112 0.76 -0.5
160,267 + GFF2112 0.82 -0.6
160,267 + GFF2112 0.82 -0.4
160,267 + GFF2112 0.82 -1.0
160,267 + GFF2112 0.82 +0.1
160,268 - GFF2112 0.82 +0.9
160,268 - GFF2112 0.82 -1.7
160,268 - GFF2112 0.82 +0.4
160,307 - GFF2112 0.84 -1.6
160,351 + GFF2112 0.86 -1.1
160,351 + GFF2112 0.86 -0.4
160,352 - GFF2112 0.86 -1.7
160,396 + GFF2112 0.89 -1.3
160,397 - GFF2112 0.89 +0.9
160,397 - GFF2112 0.89 +0.7
160,536 + -1.8
160,537 - +0.4
160,553 + +0.3
160,553 + -0.6
160,553 + -1.1
160,553 + -0.2
160,554 - -0.4
160,602 + +0.2
160,603 - +0.1
160,611 + +0.9
160,611 + -0.1
160,612 - -0.4
160,624 - -2.1
160,624 - -1.3
160,624 - -1.1
160,651 + -0.1
160,677 + -0.5
160,683 + +0.9
160,683 + -0.1
160,683 + -0.7
160,683 + -0.9
160,684 - +0.1
160,684 - -0.1
160,684 - +1.2
160,684 - -0.6
160,684 - +0.1
160,684 - +0.6
160,684 - -0.1
160,684 - -0.6
160,684 - -1.3
160,684 - -0.6
160,685 + +0.4
160,685 + -1.5
160,685 + +0.0
160,685 + -2.0
160,685 + -0.5
160,685 + +0.1
160,685 + -1.8
160,686 - -0.3
160,686 - -0.9
160,686 - +0.5
160,686 - -0.1
160,686 - -1.2
160,716 - -1.1
160,749 - -0.4
160,756 - +0.9
160,796 + GFF2113 0.11 -0.9
160,797 - GFF2113 0.11 -0.8
160,797 - GFF2113 0.11 -0.5
160,799 + GFF2113 0.12 -0.1
160,800 - GFF2113 0.12 -1.7
160,817 + GFF2113 0.16 -0.3
160,818 - GFF2113 0.17 +1.4
160,818 - GFF2113 0.17 +0.3
160,818 - GFF2113 0.17 -0.1
160,875 + GFF2113 0.32 +0.2
160,906 + GFF2113 0.40 -1.5
161,120 - -0.5
161,120 - -1.0
161,120 - -0.5
161,125 + -0.2
161,135 + -0.8
161,135 + -0.5
161,136 - -0.7
161,154 + +0.0
161,211 - -0.2
161,211 - -0.7
161,211 - +0.4
161,225 + -1.5
161,225 + +0.4
161,225 + -0.5
161,225 + +0.1
161,226 - +0.3
161,226 - +0.5
161,226 - +0.9
161,226 - -0.5
161,244 - GFF2114 0.12 -1.0
161,247 - GFF2114 0.13 -0.9
161,260 - GFF2114 0.15 -1.0
161,356 - GFF2114 0.28 -0.1
161,356 - GFF2114 0.28 -1.4
161,356 - GFF2114 0.28 +0.4
161,356 - GFF2114 0.28 -2.1
161,389 - GFF2114 0.32 -0.3
161,524 - GFF2114 0.51 -0.4
161,573 + GFF2114 0.57 +0.1
161,573 + GFF2114 0.57 -1.5
161,574 - GFF2114 0.58 -0.9
161,574 - GFF2114 0.58 -1.0
161,603 + GFF2114 0.61 -1.8
161,604 - GFF2114 0.62 -0.2
161,640 + GFF2114 0.67 +1.2
161,651 + GFF2114 0.68 -1.1
161,651 + GFF2114 0.68 -0.5
161,651 + GFF2114 0.68 -0.1
161,651 + GFF2114 0.68 -0.4
161,652 - GFF2114 0.68 -0.1
161,652 - GFF2114 0.68 +0.4
161,652 - GFF2114 0.68 -1.0
161,652 - GFF2114 0.68 -0.7
161,652 - GFF2114 0.68 -0.6
161,653 + GFF2114 0.68 -2.3
161,653 + GFF2114 0.68 -0.4
161,653 + GFF2114 0.68 -1.5
161,693 + GFF2114 0.74 -0.1
161,693 + GFF2114 0.74 -1.0
161,693 + GFF2114 0.74 -0.7
161,694 - GFF2114 0.74 -1.1
161,694 - GFF2114 0.74 -0.1
161,694 - GFF2114 0.74 -1.3
161,694 - GFF2114 0.74 -1.1
161,694 - GFF2114 0.74 -1.3
161,699 + GFF2114 0.75 -0.1
161,699 + GFF2114 0.75 +0.9
161,700 - GFF2114 0.75 -0.5
161,700 - GFF2114 0.75 -0.1
161,765 - GFF2114 0.84 +0.2
161,889 + -1.2
161,889 + -1.1
161,890 - -0.4
161,890 - -0.3
161,890 - -0.2
161,994 + +0.7
162,034 + GFF2115 0.11 -0.6
162,034 + GFF2115 0.11 -0.1
162,078 + GFF2115 0.17 -0.7
162,078 + GFF2115 0.17 -1.2
162,079 - GFF2115 0.17 -1.8
162,079 - GFF2115 0.17 -0.3
162,116 - GFF2115 0.22 -1.1

Or see this region's nucleotide sequence