Strain Fitness in Methylophilus sp. DMC18 around GFF2050

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2049 and GFF2050 are separated by 179 nucleotidesGFF2050 and GFF2051 are separated by 18 nucleotidesGFF2051 and GFF2052 are separated by 215 nucleotides GFF2049 - Anthranilate synthase component 1, at 88,169 to 89,686 GFF2049 GFF2050 - Phosphoglycolate phosphatase, plasmid, at 89,866 to 90,558 GFF2050 GFF2051 - Ribulose-phosphate 3-epimerase, at 90,577 to 91,284 GFF2051 GFF2052 - Glutamyl-tRNA reductase, at 91,500 to 92,759 GFF2052 Position (kb) 89 90 91Strain fitness (log2 ratio) -2 -1 0 1at 89.712 kb on - strandat 89.712 kb on - strandat 89.779 kb on - strandat 89.779 kb on - strandat 89.805 kb on - strandat 89.805 kb on - strandat 89.805 kb on - strandat 89.805 kb on - strandat 89.805 kb on - strandat 89.805 kb on - strandat 89.805 kb on - strandat 89.805 kb on - strandat 89.853 kb on - strandat 89.853 kb on - strandat 89.882 kb on - strandat 89.882 kb on - strandat 89.894 kb on - strandat 89.894 kb on - strandat 89.920 kb on - strandat 89.920 kb on - strandat 89.930 kb on - strandat 89.930 kb on - strandat 89.973 kb on + strand, within GFF2050at 89.974 kb on - strand, within GFF2050at 89.974 kb on - strand, within GFF2050at 89.974 kb on - strand, within GFF2050at 89.974 kb on - strand, within GFF2050at 89.976 kb on - strand, within GFF2050at 89.976 kb on - strand, within GFF2050at 89.976 kb on - strand, within GFF2050at 89.982 kb on - strand, within GFF2050at 90.027 kb on + strand, within GFF2050at 90.053 kb on - strand, within GFF2050at 90.076 kb on + strand, within GFF2050at 90.077 kb on - strand, within GFF2050at 90.077 kb on - strand, within GFF2050at 90.090 kb on + strand, within GFF2050at 90.091 kb on - strand, within GFF2050at 90.091 kb on - strand, within GFF2050at 90.091 kb on - strand, within GFF2050at 90.091 kb on - strand, within GFF2050at 90.091 kb on - strand, within GFF2050at 90.091 kb on - strand, within GFF2050at 90.091 kb on - strand, within GFF2050at 90.091 kb on - strand, within GFF2050at 90.144 kb on + strand, within GFF2050at 90.144 kb on + strand, within GFF2050at 90.145 kb on - strand, within GFF2050at 90.145 kb on - strand, within GFF2050at 90.145 kb on - strand, within GFF2050at 90.145 kb on - strand, within GFF2050at 90.191 kb on - strand, within GFF2050at 90.191 kb on - strand, within GFF2050at 90.211 kb on - strand, within GFF2050at 90.211 kb on - strand, within GFF2050at 90.211 kb on - strand, within GFF2050at 90.211 kb on - strand, within GFF2050at 90.211 kb on - strand, within GFF2050at 90.211 kb on - strand, within GFF2050at 90.211 kb on - strand, within GFF2050at 90.308 kb on + strand, within GFF2050at 90.309 kb on - strand, within GFF2050at 90.309 kb on - strand, within GFF2050at 90.320 kb on + strand, within GFF2050at 90.320 kb on + strand, within GFF2050at 90.320 kb on + strand, within GFF2050at 90.320 kb on + strand, within GFF2050at 90.321 kb on - strand, within GFF2050at 90.321 kb on - strand, within GFF2050at 90.321 kb on - strand, within GFF2050at 90.321 kb on - strand, within GFF2050at 90.417 kb on + strand, within GFF2050at 90.418 kb on - strand, within GFF2050at 90.419 kb on + strand, within GFF2050at 90.419 kb on + strand, within GFF2050at 90.419 kb on + strand, within GFF2050at 90.419 kb on + strand, within GFF2050at 90.419 kb on + strand, within GFF2050at 90.419 kb on + strand, within GFF2050at 90.419 kb on + strand, within GFF2050at 90.420 kb on - strand, within GFF2050at 90.420 kb on - strand, within GFF2050at 90.420 kb on - strand, within GFF2050at 90.420 kb on - strand, within GFF2050at 90.420 kb on - strand, within GFF2050at 90.420 kb on - strand, within GFF2050at 90.420 kb on - strand, within GFF2050at 90.420 kb on - strand, within GFF2050at 90.420 kb on - strand, within GFF2050at 90.420 kb on - strand, within GFF2050at 90.420 kb on - strand, within GFF2050at 90.471 kb on + strand, within GFF2050at 90.471 kb on + strand, within GFF2050at 90.471 kb on + strand, within GFF2050at 90.471 kb on + strand, within GFF2050at 90.472 kb on - strand, within GFF2050at 90.472 kb on - strand, within GFF2050at 90.472 kb on - strand, within GFF2050at 90.472 kb on - strand, within GFF2050at 90.472 kb on - strand, within GFF2050at 90.472 kb on - strand, within GFF2050at 90.472 kb on - strand, within GFF2050at 90.473 kb on - strand, within GFF2050at 90.574 kb on - strandat 90.590 kb on - strandat 91.301 kb on - strandat 91.314 kb on - strandat 91.314 kb on - strandat 91.389 kb on - strandat 91.389 kb on - strandat 91.389 kb on - strandat 91.389 kb on - strandat 91.390 kb on + strandat 91.390 kb on + strandat 91.390 kb on + strandat 91.489 kb on - strandat 91.489 kb on - strandat 91.489 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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89,712 - -0.5
89,712 - +0.2
89,779 - +0.1
89,779 - -2.2
89,805 - -0.1
89,805 - +0.6
89,805 - -0.3
89,805 - +0.2
89,805 - -0.9
89,805 - +0.9
89,805 - -0.2
89,805 - +0.3
89,853 - +0.1
89,853 - -0.3
89,882 - -0.9
89,882 - -1.5
89,894 - -0.5
89,894 - +0.0
89,920 - -1.1
89,920 - -1.4
89,930 - -1.6
89,930 - +0.2
89,973 + GFF2050 0.15 -2.0
89,974 - GFF2050 0.16 -2.1
89,974 - GFF2050 0.16 -1.1
89,974 - GFF2050 0.16 -1.1
89,974 - GFF2050 0.16 -1.4
89,976 - GFF2050 0.16 -2.0
89,976 - GFF2050 0.16 -1.3
89,976 - GFF2050 0.16 -1.1
89,982 - GFF2050 0.17 -0.6
90,027 + GFF2050 0.23 -1.1
90,053 - GFF2050 0.27 -0.5
90,076 + GFF2050 0.30 -1.1
90,077 - GFF2050 0.30 -0.5
90,077 - GFF2050 0.30 +0.4
90,090 + GFF2050 0.32 -0.0
90,091 - GFF2050 0.32 +0.3
90,091 - GFF2050 0.32 -0.5
90,091 - GFF2050 0.32 +0.4
90,091 - GFF2050 0.32 -1.7
90,091 - GFF2050 0.32 -0.5
90,091 - GFF2050 0.32 +0.4
90,091 - GFF2050 0.32 -0.9
90,091 - GFF2050 0.32 -1.5
90,144 + GFF2050 0.40 +0.2
90,144 + GFF2050 0.40 -0.4
90,145 - GFF2050 0.40 -0.9
90,145 - GFF2050 0.40 +0.2
90,145 - GFF2050 0.40 -0.4
90,145 - GFF2050 0.40 +0.4
90,191 - GFF2050 0.47 -0.9
90,191 - GFF2050 0.47 -0.1
90,211 - GFF2050 0.50 +0.1
90,211 - GFF2050 0.50 +0.6
90,211 - GFF2050 0.50 +0.7
90,211 - GFF2050 0.50 -1.1
90,211 - GFF2050 0.50 +0.5
90,211 - GFF2050 0.50 -1.1
90,211 - GFF2050 0.50 -1.4
90,308 + GFF2050 0.64 -0.4
90,309 - GFF2050 0.64 +0.4
90,309 - GFF2050 0.64 +0.9
90,320 + GFF2050 0.66 -2.0
90,320 + GFF2050 0.66 -0.8
90,320 + GFF2050 0.66 -0.1
90,320 + GFF2050 0.66 +1.1
90,321 - GFF2050 0.66 -0.1
90,321 - GFF2050 0.66 -2.1
90,321 - GFF2050 0.66 -0.1
90,321 - GFF2050 0.66 -1.3
90,417 + GFF2050 0.80 -1.7
90,418 - GFF2050 0.80 -0.5
90,419 + GFF2050 0.80 -0.8
90,419 + GFF2050 0.80 -1.6
90,419 + GFF2050 0.80 -0.5
90,419 + GFF2050 0.80 -0.1
90,419 + GFF2050 0.80 -0.2
90,419 + GFF2050 0.80 -1.9
90,419 + GFF2050 0.80 -0.6
90,420 - GFF2050 0.80 -1.7
90,420 - GFF2050 0.80 -1.6
90,420 - GFF2050 0.80 -1.3
90,420 - GFF2050 0.80 -1.1
90,420 - GFF2050 0.80 -1.5
90,420 - GFF2050 0.80 +0.3
90,420 - GFF2050 0.80 -1.7
90,420 - GFF2050 0.80 -0.2
90,420 - GFF2050 0.80 -0.3
90,420 - GFF2050 0.80 +0.9
90,420 - GFF2050 0.80 -2.3
90,471 + GFF2050 0.87 -0.7
90,471 + GFF2050 0.87 -2.0
90,471 + GFF2050 0.87 -0.5
90,471 + GFF2050 0.87 -0.1
90,472 - GFF2050 0.87 +0.9
90,472 - GFF2050 0.87 -1.8
90,472 - GFF2050 0.87 -2.3
90,472 - GFF2050 0.87 -0.5
90,472 - GFF2050 0.87 -1.1
90,472 - GFF2050 0.87 +0.0
90,472 - GFF2050 0.87 +0.6
90,473 - GFF2050 0.88 -0.1
90,574 - -0.6
90,590 - -0.5
91,301 - -1.1
91,314 - -1.3
91,314 - -0.6
91,389 - -1.3
91,389 - -1.3
91,389 - -0.5
91,389 - -1.3
91,390 + -2.3
91,390 + -1.0
91,390 + -0.4
91,489 - -2.1
91,489 - -1.1
91,489 - -0.1

Or see this region's nucleotide sequence