Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1944 and GFF1945 are separated by 109 nucleotides GFF1945 and GFF1946 overlap by 4 nucleotides GFF1946 and GFF1947 are separated by 196 nucleotides
GFF1944 - hypothetical protein, at 594,114 to 594,677
GFF1944
GFF1945 - Ribonuclease VapC1, at 594,787 to 595,194
GFF1945
GFF1946 - hypothetical protein, at 595,191 to 595,445
GFF1946
GFF1947 - hypothetical protein, at 595,642 to 596,895
GFF1947
Position (kb) 595
596 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 594.215 kb on + strand, within GFF1944 at 594.418 kb on + strand, within GFF1944 at 594.436 kb on + strand, within GFF1944 at 594.436 kb on + strand, within GFF1944 at 594.437 kb on - strand, within GFF1944 at 594.496 kb on - strand, within GFF1944 at 594.496 kb on - strand, within GFF1944 at 594.575 kb on - strand, within GFF1944 at 594.628 kb on + strand at 594.675 kb on + strand at 594.675 kb on + strand at 594.676 kb on - strand at 594.682 kb on + strand at 594.682 kb on + strand at 594.682 kb on + strand at 594.682 kb on + strand at 594.682 kb on + strand at 594.703 kb on + strand at 594.703 kb on + strand at 594.703 kb on + strand at 594.703 kb on + strand at 594.703 kb on + strand at 594.703 kb on + strand at 594.703 kb on + strand at 594.703 kb on + strand at 594.703 kb on + strand at 594.703 kb on + strand at 594.703 kb on + strand at 594.704 kb on - strand at 594.704 kb on - strand at 594.704 kb on - strand at 594.704 kb on - strand at 594.704 kb on - strand at 594.704 kb on - strand at 594.704 kb on - strand at 594.705 kb on + strand at 594.705 kb on + strand at 594.705 kb on + strand at 594.706 kb on - strand at 594.706 kb on - strand at 594.706 kb on - strand at 594.738 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.770 kb on + strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.771 kb on - strand at 594.774 kb on + strand at 594.774 kb on + strand at 594.774 kb on + strand at 594.774 kb on + strand at 594.775 kb on - strand at 594.775 kb on - strand at 594.775 kb on - strand at 594.775 kb on - strand at 594.775 kb on - strand at 594.775 kb on - strand at 594.775 kb on - strand at 594.775 kb on - strand at 594.775 kb on - strand at 594.775 kb on - strand at 594.811 kb on + strand at 594.812 kb on - strand at 594.812 kb on - strand at 594.853 kb on + strand, within GFF1945 at 594.893 kb on - strand, within GFF1945 at 594.893 kb on - strand, within GFF1945 at 594.893 kb on - strand, within GFF1945 at 594.915 kb on + strand, within GFF1945 at 594.915 kb on + strand, within GFF1945 at 594.916 kb on - strand, within GFF1945 at 594.916 kb on - strand, within GFF1945 at 594.927 kb on + strand, within GFF1945 at 594.927 kb on + strand, within GFF1945 at 594.928 kb on - strand, within GFF1945 at 594.928 kb on - strand, within GFF1945 at 594.951 kb on - strand, within GFF1945 at 594.951 kb on - strand, within GFF1945 at 594.980 kb on + strand, within GFF1945 at 594.981 kb on - strand, within GFF1945 at 594.993 kb on + strand, within GFF1945 at 594.994 kb on - strand, within GFF1945 at 595.045 kb on - strand, within GFF1945 at 595.060 kb on + strand, within GFF1945 at 595.060 kb on + strand, within GFF1945 at 595.060 kb on + strand, within GFF1945 at 595.064 kb on - strand, within GFF1945 at 595.064 kb on - strand, within GFF1945 at 595.064 kb on - strand, within GFF1945 at 595.073 kb on + strand, within GFF1945 at 595.073 kb on + strand, within GFF1945 at 595.074 kb on - strand, within GFF1945 at 595.089 kb on + strand, within GFF1945 at 595.089 kb on + strand, within GFF1945 at 595.090 kb on - strand, within GFF1945 at 595.090 kb on - strand, within GFF1945 at 595.099 kb on - strand, within GFF1945 at 595.099 kb on - strand, within GFF1945 at 595.112 kb on - strand, within GFF1945 at 595.112 kb on - strand, within GFF1945 at 595.112 kb on - strand, within GFF1945 at 595.160 kb on + strand at 595.161 kb on - strand at 595.183 kb on + strand at 595.183 kb on + strand at 595.183 kb on + strand at 595.184 kb on - strand at 595.184 kb on - strand at 595.184 kb on - strand at 595.184 kb on - strand at 595.184 kb on - strand at 595.184 kb on - strand at 595.185 kb on + strand at 595.185 kb on + strand at 595.185 kb on + strand at 595.185 kb on + strand at 595.185 kb on + strand at 595.185 kb on + strand at 595.185 kb on + strand at 595.185 kb on + strand at 595.185 kb on + strand at 595.186 kb on - strand at 595.186 kb on - strand at 595.186 kb on - strand at 595.186 kb on - strand at 595.186 kb on - strand at 595.186 kb on - strand at 595.186 kb on - strand at 595.186 kb on - strand at 595.186 kb on - strand at 595.186 kb on - strand at 595.186 kb on - strand at 595.186 kb on - strand at 595.187 kb on + strand at 595.187 kb on + strand at 595.187 kb on + strand at 595.187 kb on + strand at 595.187 kb on + strand at 595.187 kb on + strand at 595.187 kb on + strand at 595.187 kb on + strand at 595.188 kb on - strand at 595.188 kb on - strand at 595.188 kb on - strand at 595.188 kb on - strand at 595.188 kb on - strand at 595.195 kb on - strand at 595.205 kb on + strand at 595.205 kb on + strand at 595.206 kb on - strand at 595.206 kb on - strand at 595.206 kb on - strand at 595.227 kb on + strand, within GFF1946 at 595.228 kb on - strand, within GFF1946 at 595.292 kb on + strand, within GFF1946 at 595.524 kb on + strand at 595.525 kb on - strand at 595.525 kb on - strand at 595.608 kb on + strand at 595.613 kb on + strand at 595.613 kb on + strand at 595.721 kb on + strand at 595.721 kb on + strand at 595.721 kb on + strand at 595.722 kb on - strand at 595.770 kb on + strand, within GFF1947 at 595.771 kb on - strand, within GFF1947 at 595.826 kb on + strand, within GFF1947 at 595.826 kb on + strand, within GFF1947 at 595.826 kb on + strand, within GFF1947 at 595.826 kb on + strand, within GFF1947 at 595.828 kb on + strand, within GFF1947 at 595.876 kb on - strand, within GFF1947 at 595.883 kb on + strand, within GFF1947 at 595.884 kb on - strand, within GFF1947 at 595.913 kb on + strand, within GFF1947 at 595.913 kb on + strand, within GFF1947 at 595.913 kb on + strand, within GFF1947 at 595.914 kb on - strand, within GFF1947 at 595.929 kb on + strand, within GFF1947 at 595.982 kb on + strand, within GFF1947 at 595.982 kb on + strand, within GFF1947 at 595.982 kb on + strand, within GFF1947 at 595.983 kb on - strand, within GFF1947 at 596.012 kb on + strand, within GFF1947 at 596.013 kb on - strand, within GFF1947 at 596.017 kb on - strand, within GFF1947 at 596.017 kb on - strand, within GFF1947 at 596.047 kb on - strand, within GFF1947 at 596.047 kb on - strand, within GFF1947 at 596.120 kb on + strand, within GFF1947 at 596.126 kb on + strand, within GFF1947 at 596.126 kb on + strand, within GFF1947 at 596.126 kb on + strand, within GFF1947 at 596.126 kb on + strand, within GFF1947 at 596.203 kb on + strand, within GFF1947 at 596.259 kb on + strand, within GFF1947 at 596.259 kb on + strand, within GFF1947 at 596.260 kb on - strand, within GFF1947 at 596.260 kb on - strand, within GFF1947 at 596.260 kb on - strand, within GFF1947 at 596.261 kb on + strand, within GFF1947 at 596.261 kb on + strand, within GFF1947 at 596.261 kb on + strand, within GFF1947 at 596.261 kb on + strand, within GFF1947 at 596.261 kb on + strand, within GFF1947 at 596.261 kb on + strand, within GFF1947 at 596.261 kb on + strand, within GFF1947 at 596.261 kb on + strand, within GFF1947 at 596.261 kb on + strand, within GFF1947 at 596.262 kb on - strand, within GFF1947 at 596.262 kb on - strand, within GFF1947 at 596.262 kb on - strand, within GFF1947 at 596.262 kb on - strand, within GFF1947 at 596.262 kb on - strand, within GFF1947 at 596.262 kb on - strand, within GFF1947 at 596.262 kb on - strand, within GFF1947 at 596.262 kb on - strand, within GFF1947 at 596.268 kb on + strand, within GFF1947 at 596.268 kb on + strand, within GFF1947 at 596.303 kb on + strand, within GFF1947 at 596.303 kb on + strand, within GFF1947 at 596.303 kb on + strand, within GFF1947 at 596.304 kb on - strand, within GFF1947 at 596.304 kb on - strand, within GFF1947 at 596.326 kb on - strand, within GFF1947 at 596.329 kb on + strand, within GFF1947 at 596.330 kb on - strand, within GFF1947 at 596.340 kb on - strand, within GFF1947 at 596.436 kb on + strand, within GFF1947 at 596.436 kb on + strand, within GFF1947 at 596.436 kb on + strand, within GFF1947
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 594,215 + GFF1944 0.18 -0.8 594,418 + GFF1944 0.54 +0.5 594,436 + GFF1944 0.57 -1.4 594,436 + GFF1944 0.57 -1.6 594,437 - GFF1944 0.57 -1.0 594,496 - GFF1944 0.68 -1.4 594,496 - GFF1944 0.68 -0.1 594,575 - GFF1944 0.82 -1.0 594,628 + -0.0 594,675 + -0.4 594,675 + -0.8 594,676 - +1.5 594,682 + -0.3 594,682 + -1.1 594,682 + -0.5 594,682 + -1.5 594,682 + -1.1 594,703 + -0.0 594,703 + +0.4 594,703 + -0.3 594,703 + -1.4 594,703 + -0.9 594,703 + +0.4 594,703 + -0.0 594,703 + -0.2 594,703 + -1.5 594,703 + -0.7 594,703 + -2.0 594,704 - -0.4 594,704 - -1.0 594,704 - -1.1 594,704 - -0.4 594,704 - -0.7 594,704 - -0.2 594,704 - -0.0 594,705 + -0.4 594,705 + +0.2 594,705 + -0.0 594,706 - +0.1 594,706 - -1.6 594,706 - -0.0 594,738 + -1.0 594,770 + -0.0 594,770 + -0.5 594,770 + -0.2 594,770 + -1.6 594,770 + +0.4 594,770 + -0.4 594,770 + -0.9 594,770 + -0.4 594,770 + -2.6 594,770 + +0.7 594,770 + -1.0 594,770 + -0.4 594,770 + -0.3 594,770 + -1.0 594,770 + -0.3 594,770 + -0.0 594,770 + -0.0 594,770 + -1.4 594,770 + -0.4 594,771 - -0.0 594,771 - +1.0 594,771 - -0.2 594,771 - -1.1 594,771 - -0.9 594,771 - -1.2 594,771 - -0.0 594,771 - -1.7 594,771 - +0.8 594,771 - -0.3 594,771 - -1.0 594,771 - +0.2 594,771 - -0.3 594,771 - -0.8 594,774 + +0.3 594,774 + -1.0 594,774 + +0.5 594,774 + +0.2 594,775 - -1.9 594,775 - -1.6 594,775 - -0.3 594,775 - -1.0 594,775 - -1.4 594,775 - -0.6 594,775 - -0.8 594,775 - -1.0 594,775 - -0.2 594,775 - +0.3 594,811 + -1.5 594,812 - -0.0 594,812 - -0.0 594,853 + GFF1945 0.16 -0.8 594,893 - GFF1945 0.26 -1.2 594,893 - GFF1945 0.26 -1.6 594,893 - GFF1945 0.26 -0.7 594,915 + GFF1945 0.31 +0.2 594,915 + GFF1945 0.31 -0.9 594,916 - GFF1945 0.32 -1.4 594,916 - GFF1945 0.32 +0.6 594,927 + GFF1945 0.34 -0.9 594,927 + GFF1945 0.34 +0.4 594,928 - GFF1945 0.35 -1.6 594,928 - GFF1945 0.35 -1.2 594,951 - GFF1945 0.40 -0.4 594,951 - GFF1945 0.40 -0.0 594,980 + GFF1945 0.47 -1.0 594,981 - GFF1945 0.48 -0.9 594,993 + GFF1945 0.50 -0.2 594,994 - GFF1945 0.51 +0.1 595,045 - GFF1945 0.63 -3.0 595,060 + GFF1945 0.67 -1.0 595,060 + GFF1945 0.67 -1.9 595,060 + GFF1945 0.67 -1.4 595,064 - GFF1945 0.68 +1.2 595,064 - GFF1945 0.68 -0.4 595,064 - GFF1945 0.68 -0.0 595,073 + GFF1945 0.70 +0.5 595,073 + GFF1945 0.70 +0.6 595,074 - GFF1945 0.70 +0.4 595,089 + GFF1945 0.74 -2.0 595,089 + GFF1945 0.74 -0.0 595,090 - GFF1945 0.74 -0.3 595,090 - GFF1945 0.74 -1.7 595,099 - GFF1945 0.76 -1.4 595,099 - GFF1945 0.76 -0.2 595,112 - GFF1945 0.80 -1.0 595,112 - GFF1945 0.80 +0.7 595,112 - GFF1945 0.80 -0.5 595,160 + -0.2 595,161 - -0.0 595,183 + -0.8 595,183 + -0.7 595,183 + -1.0 595,184 - -1.0 595,184 - -1.0 595,184 - -0.5 595,184 - -0.3 595,184 - -0.4 595,184 - -0.4 595,185 + -0.6 595,185 + -1.4 595,185 + -0.9 595,185 + +0.5 595,185 + -0.4 595,185 + -0.0 595,185 + +0.2 595,185 + -0.0 595,185 + -0.4 595,186 - +0.2 595,186 - -0.4 595,186 - -1.0 595,186 - -2.2 595,186 - -0.8 595,186 - -0.3 595,186 - -0.3 595,186 - -1.7 595,186 - -0.6 595,186 - -0.8 595,186 - +0.3 595,186 - -2.4 595,187 + -0.4 595,187 + -0.6 595,187 + -0.9 595,187 + +0.7 595,187 + +0.2 595,187 + -1.0 595,187 + -1.2 595,187 + -1.0 595,188 - +1.0 595,188 - -0.3 595,188 - -0.2 595,188 - +0.5 595,188 - -0.7 595,195 - -0.4 595,205 + -0.2 595,205 + +0.5 595,206 - -0.9 595,206 - +0.1 595,206 - -1.0 595,227 + GFF1946 0.14 -1.0 595,228 - GFF1946 0.15 -0.6 595,292 + GFF1946 0.40 -2.2 595,524 + -1.3 595,525 - +1.5 595,525 - -0.8 595,608 + -1.1 595,613 + +0.4 595,613 + +0.5 595,721 + -1.1 595,721 + -1.0 595,721 + -0.7 595,722 - -0.9 595,770 + GFF1947 0.10 +1.0 595,771 - GFF1947 0.10 -0.3 595,826 + GFF1947 0.15 -2.6 595,826 + GFF1947 0.15 +1.2 595,826 + GFF1947 0.15 -0.8 595,826 + GFF1947 0.15 -0.0 595,828 + GFF1947 0.15 +0.5 595,876 - GFF1947 0.19 -0.5 595,883 + GFF1947 0.19 +0.5 595,884 - GFF1947 0.19 -1.4 595,913 + GFF1947 0.22 -1.0 595,913 + GFF1947 0.22 -0.0 595,913 + GFF1947 0.22 -1.0 595,914 - GFF1947 0.22 -1.0 595,929 + GFF1947 0.23 -0.1 595,982 + GFF1947 0.27 -0.8 595,982 + GFF1947 0.27 -0.8 595,982 + GFF1947 0.27 +0.2 595,983 - GFF1947 0.27 +0.5 596,012 + GFF1947 0.30 -0.3 596,013 - GFF1947 0.30 -1.6 596,017 - GFF1947 0.30 -1.0 596,017 - GFF1947 0.30 -0.1 596,047 - GFF1947 0.32 +0.2 596,047 - GFF1947 0.32 -2.5 596,120 + GFF1947 0.38 -1.1 596,126 + GFF1947 0.39 -1.0 596,126 + GFF1947 0.39 +0.3 596,126 + GFF1947 0.39 -0.6 596,126 + GFF1947 0.39 -0.0 596,203 + GFF1947 0.45 -1.1 596,259 + GFF1947 0.49 -0.0 596,259 + GFF1947 0.49 -0.3 596,260 - GFF1947 0.49 -0.6 596,260 - GFF1947 0.49 -1.4 596,260 - GFF1947 0.49 -1.6 596,261 + GFF1947 0.49 -0.7 596,261 + GFF1947 0.49 -2.4 596,261 + GFF1947 0.49 -1.0 596,261 + GFF1947 0.49 -1.0 596,261 + GFF1947 0.49 +0.7 596,261 + GFF1947 0.49 -1.4 596,261 + GFF1947 0.49 -1.4 596,261 + GFF1947 0.49 -0.0 596,261 + GFF1947 0.49 +1.3 596,262 - GFF1947 0.49 -1.5 596,262 - GFF1947 0.49 -1.0 596,262 - GFF1947 0.49 -0.6 596,262 - GFF1947 0.49 +0.7 596,262 - GFF1947 0.49 -1.6 596,262 - GFF1947 0.49 -0.6 596,262 - GFF1947 0.49 -1.4 596,262 - GFF1947 0.49 -0.0 596,268 + GFF1947 0.50 -0.6 596,268 + GFF1947 0.50 +0.6 596,303 + GFF1947 0.53 -0.0 596,303 + GFF1947 0.53 -1.0 596,303 + GFF1947 0.53 +0.8 596,304 - GFF1947 0.53 -1.0 596,304 - GFF1947 0.53 +0.5 596,326 - GFF1947 0.55 -0.6 596,329 + GFF1947 0.55 -0.0 596,330 - GFF1947 0.55 -0.6 596,340 - GFF1947 0.56 -1.0 596,436 + GFF1947 0.63 -0.2 596,436 + GFF1947 0.63 -1.3 596,436 + GFF1947 0.63 -0.5
Or see this region's nucleotide sequence