Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1929 and GFF1930 are separated by 41 nucleotides GFF1930 and GFF1931 are separated by 52 nucleotides GFF1931 and GFF1932 are separated by 61 nucleotides
GFF1929 - hypothetical protein, at 580,360 to 581,544
GFF1929
GFF1930 - Formamidase, at 581,586 to 582,809
GFF1930
GFF1931 - hypothetical protein, at 582,862 to 583,200
GFF1931
GFF1932 - Aliphatic amidase expression-regulating protein, at 583,262 to 584,500
GFF1932
Position (kb) 581
582
583 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 580.594 kb on - strand, within GFF1929 at 580.600 kb on + strand, within GFF1929 at 580.600 kb on + strand, within GFF1929 at 580.601 kb on - strand, within GFF1929 at 580.601 kb on - strand, within GFF1929 at 580.762 kb on + strand, within GFF1929 at 580.763 kb on - strand, within GFF1929 at 580.763 kb on - strand, within GFF1929 at 580.765 kb on + strand, within GFF1929 at 580.765 kb on + strand, within GFF1929 at 580.766 kb on - strand, within GFF1929 at 580.766 kb on - strand, within GFF1929 at 580.766 kb on - strand, within GFF1929 at 580.858 kb on - strand, within GFF1929 at 580.881 kb on + strand, within GFF1929 at 580.881 kb on + strand, within GFF1929 at 580.881 kb on + strand, within GFF1929 at 580.881 kb on + strand, within GFF1929 at 580.927 kb on - strand, within GFF1929 at 580.962 kb on + strand, within GFF1929 at 580.962 kb on + strand, within GFF1929 at 580.963 kb on - strand, within GFF1929 at 580.963 kb on - strand, within GFF1929 at 580.963 kb on - strand, within GFF1929 at 580.968 kb on + strand, within GFF1929 at 580.968 kb on + strand, within GFF1929 at 580.979 kb on - strand, within GFF1929 at 580.979 kb on - strand, within GFF1929 at 580.996 kb on + strand, within GFF1929 at 581.026 kb on + strand, within GFF1929 at 581.026 kb on + strand, within GFF1929 at 581.027 kb on - strand, within GFF1929 at 581.041 kb on + strand, within GFF1929 at 581.042 kb on - strand, within GFF1929 at 581.042 kb on - strand, within GFF1929 at 581.086 kb on + strand, within GFF1929 at 581.113 kb on - strand, within GFF1929 at 581.131 kb on + strand, within GFF1929 at 581.131 kb on + strand, within GFF1929 at 581.131 kb on + strand, within GFF1929 at 581.140 kb on + strand, within GFF1929 at 581.140 kb on + strand, within GFF1929 at 581.141 kb on - strand, within GFF1929 at 581.185 kb on - strand, within GFF1929 at 581.206 kb on + strand, within GFF1929 at 581.206 kb on + strand, within GFF1929 at 581.207 kb on - strand, within GFF1929 at 581.207 kb on - strand, within GFF1929 at 581.209 kb on + strand, within GFF1929 at 581.212 kb on + strand, within GFF1929 at 581.212 kb on + strand, within GFF1929 at 581.212 kb on + strand, within GFF1929 at 581.212 kb on + strand, within GFF1929 at 581.212 kb on + strand, within GFF1929 at 581.213 kb on - strand, within GFF1929 at 581.213 kb on - strand, within GFF1929 at 581.215 kb on + strand, within GFF1929 at 581.215 kb on + strand, within GFF1929 at 581.236 kb on - strand, within GFF1929 at 581.257 kb on + strand, within GFF1929 at 581.257 kb on + strand, within GFF1929 at 581.258 kb on - strand, within GFF1929 at 581.271 kb on - strand, within GFF1929 at 581.275 kb on + strand, within GFF1929 at 581.294 kb on + strand, within GFF1929 at 581.316 kb on + strand, within GFF1929 at 581.317 kb on - strand, within GFF1929 at 581.317 kb on - strand, within GFF1929 at 581.317 kb on - strand, within GFF1929 at 581.359 kb on + strand, within GFF1929 at 581.360 kb on - strand, within GFF1929 at 581.383 kb on - strand, within GFF1929 at 581.388 kb on + strand, within GFF1929 at 581.434 kb on + strand at 581.434 kb on + strand at 581.434 kb on + strand at 581.435 kb on - strand at 581.435 kb on - strand at 581.435 kb on - strand at 581.435 kb on - strand at 581.449 kb on + strand at 581.449 kb on + strand at 581.449 kb on + strand at 581.450 kb on - strand at 581.450 kb on - strand at 581.487 kb on + strand at 581.506 kb on - strand at 581.506 kb on - strand at 581.542 kb on + strand at 581.543 kb on - strand at 581.553 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.556 kb on + strand at 581.557 kb on - strand at 581.596 kb on + strand at 581.717 kb on + strand, within GFF1930 at 581.717 kb on + strand, within GFF1930 at 581.796 kb on + strand, within GFF1930 at 581.797 kb on - strand, within GFF1930 at 581.883 kb on + strand, within GFF1930 at 581.897 kb on + strand, within GFF1930 at 581.988 kb on + strand, within GFF1930 at 581.988 kb on + strand, within GFF1930 at 581.988 kb on + strand, within GFF1930 at 581.988 kb on + strand, within GFF1930 at 581.989 kb on - strand, within GFF1930 at 581.989 kb on - strand, within GFF1930 at 581.991 kb on - strand, within GFF1930 at 582.011 kb on + strand, within GFF1930 at 582.021 kb on + strand, within GFF1930 at 582.033 kb on - strand, within GFF1930 at 582.033 kb on - strand, within GFF1930 at 582.224 kb on + strand, within GFF1930 at 582.251 kb on + strand, within GFF1930 at 582.292 kb on - strand, within GFF1930 at 582.292 kb on - strand, within GFF1930 at 582.292 kb on - strand, within GFF1930 at 582.397 kb on - strand, within GFF1930 at 582.441 kb on + strand, within GFF1930 at 582.441 kb on + strand, within GFF1930 at 582.450 kb on - strand, within GFF1930 at 582.498 kb on + strand, within GFF1930 at 582.498 kb on + strand, within GFF1930 at 582.499 kb on - strand, within GFF1930 at 582.499 kb on - strand, within GFF1930 at 582.499 kb on - strand, within GFF1930 at 582.499 kb on - strand, within GFF1930 at 582.499 kb on - strand, within GFF1930 at 582.499 kb on - strand, within GFF1930 at 582.546 kb on + strand, within GFF1930 at 582.547 kb on - strand, within GFF1930 at 582.560 kb on + strand, within GFF1930 at 582.561 kb on - strand, within GFF1930 at 582.561 kb on - strand, within GFF1930 at 582.561 kb on - strand, within GFF1930 at 582.561 kb on - strand, within GFF1930 at 582.561 kb on - strand, within GFF1930 at 582.640 kb on + strand, within GFF1930 at 582.641 kb on - strand, within GFF1930 at 582.668 kb on + strand, within GFF1930 at 582.668 kb on + strand, within GFF1930 at 582.669 kb on - strand, within GFF1930 at 582.750 kb on - strand at 582.787 kb on + strand at 582.787 kb on + strand at 582.787 kb on + strand at 582.787 kb on + strand at 582.787 kb on + strand at 582.787 kb on + strand at 582.787 kb on + strand at 582.787 kb on + strand at 582.787 kb on + strand at 582.788 kb on - strand at 582.788 kb on - strand at 582.788 kb on - strand at 582.788 kb on - strand at 582.788 kb on - strand at 582.788 kb on - strand at 582.788 kb on - strand at 582.788 kb on - strand at 582.788 kb on - strand at 582.797 kb on + strand at 582.797 kb on + strand at 582.797 kb on + strand at 582.798 kb on - strand at 582.798 kb on - strand at 582.800 kb on - strand at 582.807 kb on + strand at 582.807 kb on + strand at 582.807 kb on + strand at 582.808 kb on - strand at 582.833 kb on + strand at 582.834 kb on - strand at 582.851 kb on - strand at 582.851 kb on - strand at 582.871 kb on + strand at 582.877 kb on + strand at 582.877 kb on + strand at 582.877 kb on + strand at 582.878 kb on - strand at 582.904 kb on - strand, within GFF1931 at 582.980 kb on + strand, within GFF1931 at 582.981 kb on - strand, within GFF1931 at 583.035 kb on + strand, within GFF1931 at 583.036 kb on - strand, within GFF1931 at 583.062 kb on + strand, within GFF1931 at 583.089 kb on + strand, within GFF1931 at 583.140 kb on + strand, within GFF1931 at 583.141 kb on - strand, within GFF1931 at 583.220 kb on - strand at 583.220 kb on - strand at 583.220 kb on - strand at 583.241 kb on - strand at 583.246 kb on + strand at 583.260 kb on + strand at 583.260 kb on + strand at 583.260 kb on + strand at 583.260 kb on + strand at 583.268 kb on - strand at 583.268 kb on - strand at 583.289 kb on - strand at 583.379 kb on - strand at 583.410 kb on + strand, within GFF1932 at 583.410 kb on + strand, within GFF1932 at 583.410 kb on + strand, within GFF1932 at 583.411 kb on - strand, within GFF1932 at 583.416 kb on + strand, within GFF1932 at 583.417 kb on - strand, within GFF1932 at 583.420 kb on + strand, within GFF1932 at 583.421 kb on - strand, within GFF1932 at 583.421 kb on - strand, within GFF1932 at 583.468 kb on + strand, within GFF1932 at 583.469 kb on - strand, within GFF1932 at 583.517 kb on - strand, within GFF1932 at 583.651 kb on + strand, within GFF1932 at 583.652 kb on - strand, within GFF1932 at 583.652 kb on - strand, within GFF1932 at 583.697 kb on - strand, within GFF1932 at 583.698 kb on - strand, within GFF1932 at 583.698 kb on - strand, within GFF1932 at 583.698 kb on - strand, within GFF1932 at 583.710 kb on - strand, within GFF1932 at 583.742 kb on + strand, within GFF1932
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 580,594 - GFF1929 0.20 -0.3 580,600 + GFF1929 0.20 +0.7 580,600 + GFF1929 0.20 -1.2 580,601 - GFF1929 0.20 -0.6 580,601 - GFF1929 0.20 +0.6 580,762 + GFF1929 0.34 +0.5 580,763 - GFF1929 0.34 -1.2 580,763 - GFF1929 0.34 -1.4 580,765 + GFF1929 0.34 -0.4 580,765 + GFF1929 0.34 +0.2 580,766 - GFF1929 0.34 -0.4 580,766 - GFF1929 0.34 -1.0 580,766 - GFF1929 0.34 -1.1 580,858 - GFF1929 0.42 -1.1 580,881 + GFF1929 0.44 -0.0 580,881 + GFF1929 0.44 -0.2 580,881 + GFF1929 0.44 -0.6 580,881 + GFF1929 0.44 -0.3 580,927 - GFF1929 0.48 -0.0 580,962 + GFF1929 0.51 -1.4 580,962 + GFF1929 0.51 -0.2 580,963 - GFF1929 0.51 -0.5 580,963 - GFF1929 0.51 -0.0 580,963 - GFF1929 0.51 -1.4 580,968 + GFF1929 0.51 -0.4 580,968 + GFF1929 0.51 +0.6 580,979 - GFF1929 0.52 -0.4 580,979 - GFF1929 0.52 -0.9 580,996 + GFF1929 0.54 +0.7 581,026 + GFF1929 0.56 -1.0 581,026 + GFF1929 0.56 -1.0 581,027 - GFF1929 0.56 -2.0 581,041 + GFF1929 0.57 -0.6 581,042 - GFF1929 0.58 -1.0 581,042 - GFF1929 0.58 -1.4 581,086 + GFF1929 0.61 -3.0 581,113 - GFF1929 0.64 +0.5 581,131 + GFF1929 0.65 -0.6 581,131 + GFF1929 0.65 -0.9 581,131 + GFF1929 0.65 +0.4 581,140 + GFF1929 0.66 -0.7 581,140 + GFF1929 0.66 -2.0 581,141 - GFF1929 0.66 -0.0 581,185 - GFF1929 0.70 +0.1 581,206 + GFF1929 0.71 -0.1 581,206 + GFF1929 0.71 -1.6 581,207 - GFF1929 0.71 -1.0 581,207 - GFF1929 0.71 -1.0 581,209 + GFF1929 0.72 -0.6 581,212 + GFF1929 0.72 -0.6 581,212 + GFF1929 0.72 -2.2 581,212 + GFF1929 0.72 -0.3 581,212 + GFF1929 0.72 -0.3 581,212 + GFF1929 0.72 -2.0 581,213 - GFF1929 0.72 -1.7 581,213 - GFF1929 0.72 -1.6 581,215 + GFF1929 0.72 +0.4 581,215 + GFF1929 0.72 -1.4 581,236 - GFF1929 0.74 +0.6 581,257 + GFF1929 0.76 -1.0 581,257 + GFF1929 0.76 -2.2 581,258 - GFF1929 0.76 +0.4 581,271 - GFF1929 0.77 -0.2 581,275 + GFF1929 0.77 +0.3 581,294 + GFF1929 0.79 +1.4 581,316 + GFF1929 0.81 +0.4 581,317 - GFF1929 0.81 -0.8 581,317 - GFF1929 0.81 -1.0 581,317 - GFF1929 0.81 -0.2 581,359 + GFF1929 0.84 -1.0 581,360 - GFF1929 0.84 +0.5 581,383 - GFF1929 0.86 -1.0 581,388 + GFF1929 0.87 -0.0 581,434 + +0.4 581,434 + -2.0 581,434 + -2.0 581,435 - -1.2 581,435 - -0.4 581,435 - -0.0 581,435 - +0.2 581,449 + -0.6 581,449 + +0.5 581,449 + +1.0 581,450 - -0.7 581,450 - -1.3 581,487 + +0.5 581,506 - +0.6 581,506 - -0.6 581,542 + +0.7 581,543 - +1.0 581,553 + -1.9 581,554 + -0.7 581,554 + -0.0 581,554 + +0.5 581,554 + -1.5 581,554 + +0.2 581,554 + -0.5 581,554 + -1.0 581,555 - -1.0 581,555 - -0.4 581,555 - +0.1 581,555 - -1.3 581,555 - -0.1 581,556 + -0.6 581,557 - +1.0 581,596 + -0.7 581,717 + GFF1930 0.11 +0.3 581,717 + GFF1930 0.11 -1.7 581,796 + GFF1930 0.17 -0.6 581,797 - GFF1930 0.17 -0.5 581,883 + GFF1930 0.24 +0.8 581,897 + GFF1930 0.25 -0.3 581,988 + GFF1930 0.33 +0.5 581,988 + GFF1930 0.33 +0.5 581,988 + GFF1930 0.33 -0.4 581,988 + GFF1930 0.33 +0.7 581,989 - GFF1930 0.33 +0.2 581,989 - GFF1930 0.33 -0.7 581,991 - GFF1930 0.33 -0.6 582,011 + GFF1930 0.35 +1.0 582,021 + GFF1930 0.36 -0.4 582,033 - GFF1930 0.37 -0.9 582,033 - GFF1930 0.37 -1.5 582,224 + GFF1930 0.52 +0.5 582,251 + GFF1930 0.54 -0.7 582,292 - GFF1930 0.58 -0.7 582,292 - GFF1930 0.58 -0.5 582,292 - GFF1930 0.58 +0.2 582,397 - GFF1930 0.66 -1.0 582,441 + GFF1930 0.70 -0.4 582,441 + GFF1930 0.70 +0.2 582,450 - GFF1930 0.71 -1.6 582,498 + GFF1930 0.75 -0.9 582,498 + GFF1930 0.75 -0.2 582,499 - GFF1930 0.75 -0.2 582,499 - GFF1930 0.75 -1.4 582,499 - GFF1930 0.75 +1.5 582,499 - GFF1930 0.75 +0.1 582,499 - GFF1930 0.75 -0.7 582,499 - GFF1930 0.75 -1.4 582,546 + GFF1930 0.78 -0.1 582,547 - GFF1930 0.79 -0.6 582,560 + GFF1930 0.80 -1.0 582,561 - GFF1930 0.80 +0.1 582,561 - GFF1930 0.80 -1.0 582,561 - GFF1930 0.80 -0.9 582,561 - GFF1930 0.80 -1.0 582,561 - GFF1930 0.80 -0.0 582,640 + GFF1930 0.86 -3.4 582,641 - GFF1930 0.86 -1.6 582,668 + GFF1930 0.88 +0.1 582,668 + GFF1930 0.88 -1.0 582,669 - GFF1930 0.88 -1.0 582,750 - -0.0 582,787 + +0.3 582,787 + -0.0 582,787 + -0.6 582,787 + -0.0 582,787 + +0.3 582,787 + -0.4 582,787 + -1.4 582,787 + -0.0 582,787 + -0.4 582,788 - -1.4 582,788 - -0.1 582,788 - -1.4 582,788 - -2.7 582,788 - +0.7 582,788 - -0.5 582,788 - +1.3 582,788 - +0.4 582,788 - -0.8 582,797 + -1.2 582,797 + -0.0 582,797 + +0.0 582,798 - -0.0 582,798 - -0.5 582,800 - -0.4 582,807 + -0.1 582,807 + -0.4 582,807 + -1.1 582,808 - -1.0 582,833 + -0.5 582,834 - +1.0 582,851 - -0.3 582,851 - -1.4 582,871 + -1.4 582,877 + -1.0 582,877 + -0.5 582,877 + +0.1 582,878 - -0.9 582,904 - GFF1931 0.12 +0.2 582,980 + GFF1931 0.35 +0.2 582,981 - GFF1931 0.35 -0.9 583,035 + GFF1931 0.51 -2.0 583,036 - GFF1931 0.51 -1.3 583,062 + GFF1931 0.59 +0.3 583,089 + GFF1931 0.67 -0.6 583,140 + GFF1931 0.82 -0.0 583,141 - GFF1931 0.82 -1.2 583,220 - -1.4 583,220 - +0.2 583,220 - -1.0 583,241 - -2.0 583,246 + -0.0 583,260 + -0.2 583,260 + -1.4 583,260 + -2.2 583,260 + -0.8 583,268 - -0.4 583,268 - -1.6 583,289 - -1.0 583,379 - -0.8 583,410 + GFF1932 0.12 -1.0 583,410 + GFF1932 0.12 -0.3 583,410 + GFF1932 0.12 -0.7 583,411 - GFF1932 0.12 -0.7 583,416 + GFF1932 0.12 -1.9 583,417 - GFF1932 0.13 -0.4 583,420 + GFF1932 0.13 -1.2 583,421 - GFF1932 0.13 -0.7 583,421 - GFF1932 0.13 -1.6 583,468 + GFF1932 0.17 -3.2 583,469 - GFF1932 0.17 -2.0 583,517 - GFF1932 0.21 +0.5 583,651 + GFF1932 0.31 +0.1 583,652 - GFF1932 0.31 -0.7 583,652 - GFF1932 0.31 -0.2 583,697 - GFF1932 0.35 -1.0 583,698 - GFF1932 0.35 +0.1 583,698 - GFF1932 0.35 +0.2 583,698 - GFF1932 0.35 -0.4 583,710 - GFF1932 0.36 +0.8 583,742 + GFF1932 0.39 -0.4
Or see this region's nucleotide sequence