Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1922 and GFF1923 are separated by 4 nucleotides GFF1923 and GFF1924 overlap by 17 nucleotides GFF1924 and GFF1925 are separated by 230 nucleotides
GFF1922 - Ubiquinone biosynthesis accessory factor UbiJ, at 573,396 to 573,992
GFF1922
GFF1923 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE, at 573,997 to 574,764
GFF1923
GFF1924 - hypothetical protein, at 574,748 to 575,143
GFF1924
GFF1925 - hypothetical protein, at 575,374 to 577,329
GFF1925
Position (kb) 574
575
576 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 574.784 kb on - strand at 574.813 kb on - strand, within GFF1924 at 574.834 kb on - strand, within GFF1924 at 574.849 kb on - strand, within GFF1924 at 574.849 kb on - strand, within GFF1924 at 574.852 kb on - strand, within GFF1924 at 574.852 kb on - strand, within GFF1924 at 574.852 kb on - strand, within GFF1924 at 574.858 kb on - strand, within GFF1924 at 574.858 kb on - strand, within GFF1924 at 574.858 kb on - strand, within GFF1924 at 574.870 kb on - strand, within GFF1924 at 574.870 kb on - strand, within GFF1924 at 575.016 kb on + strand, within GFF1924 at 575.017 kb on - strand, within GFF1924 at 575.025 kb on - strand, within GFF1924 at 575.025 kb on - strand, within GFF1924 at 575.132 kb on + strand at 575.132 kb on + strand at 575.132 kb on + strand at 575.133 kb on - strand at 575.133 kb on - strand at 575.133 kb on - strand at 575.133 kb on - strand at 575.133 kb on - strand at 575.133 kb on - strand at 575.133 kb on - strand at 575.133 kb on - strand at 575.133 kb on - strand at 575.143 kb on + strand at 575.143 kb on + strand at 575.143 kb on + strand at 575.144 kb on - strand at 575.144 kb on - strand at 575.144 kb on - strand at 575.144 kb on - strand at 575.144 kb on - strand at 575.145 kb on - strand at 575.183 kb on + strand at 575.195 kb on + strand at 575.196 kb on - strand at 575.196 kb on - strand at 575.196 kb on - strand at 575.212 kb on + strand at 575.212 kb on + strand at 575.213 kb on - strand at 575.271 kb on - strand at 575.292 kb on + strand at 575.304 kb on + strand at 575.317 kb on + strand at 575.317 kb on + strand at 575.317 kb on + strand at 575.318 kb on - strand at 575.318 kb on - strand at 575.322 kb on + strand at 575.324 kb on + strand at 575.342 kb on + strand at 575.342 kb on + strand at 575.342 kb on + strand at 575.343 kb on - strand at 575.343 kb on - strand at 575.343 kb on - strand at 575.343 kb on - strand at 575.353 kb on - strand at 575.355 kb on + strand at 575.373 kb on + strand at 575.410 kb on + strand at 575.410 kb on + strand at 575.410 kb on + strand at 575.441 kb on + strand at 575.441 kb on + strand at 575.441 kb on + strand at 575.442 kb on - strand at 575.495 kb on + strand at 575.495 kb on + strand at 575.495 kb on + strand at 575.496 kb on - strand at 575.507 kb on + strand at 575.508 kb on - strand at 575.508 kb on - strand at 575.508 kb on - strand at 575.614 kb on + strand, within GFF1925 at 575.678 kb on - strand, within GFF1925 at 575.739 kb on - strand, within GFF1925 at 575.745 kb on + strand, within GFF1925 at 575.745 kb on + strand, within GFF1925 at 575.745 kb on + strand, within GFF1925 at 575.876 kb on + strand, within GFF1925 at 575.877 kb on - strand, within GFF1925 at 575.884 kb on + strand, within GFF1925 at 575.884 kb on + strand, within GFF1925 at 575.885 kb on - strand, within GFF1925 at 575.885 kb on - strand, within GFF1925 at 575.885 kb on - strand, within GFF1925 at 575.957 kb on - strand, within GFF1925 at 575.967 kb on + strand, within GFF1925 at 575.967 kb on + strand, within GFF1925 at 575.968 kb on - strand, within GFF1925 at 575.968 kb on - strand, within GFF1925 at 576.012 kb on + strand, within GFF1925 at 576.091 kb on - strand, within GFF1925
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 574,784 - -1.7 574,813 - GFF1924 0.16 -0.5 574,834 - GFF1924 0.22 -1.4 574,849 - GFF1924 0.26 -0.9 574,849 - GFF1924 0.26 -0.5 574,852 - GFF1924 0.26 -1.0 574,852 - GFF1924 0.26 -0.3 574,852 - GFF1924 0.26 -1.0 574,858 - GFF1924 0.28 -1.2 574,858 - GFF1924 0.28 -1.0 574,858 - GFF1924 0.28 -0.5 574,870 - GFF1924 0.31 -0.8 574,870 - GFF1924 0.31 -2.4 575,016 + GFF1924 0.68 -1.1 575,017 - GFF1924 0.68 -0.0 575,025 - GFF1924 0.70 -0.8 575,025 - GFF1924 0.70 -1.0 575,132 + -2.4 575,132 + -0.5 575,132 + -0.4 575,133 - -0.3 575,133 - -0.0 575,133 - -1.0 575,133 - -1.6 575,133 - -0.0 575,133 - +0.5 575,133 - +0.4 575,133 - -1.5 575,133 - -0.8 575,143 + -1.2 575,143 + -0.9 575,143 + -2.9 575,144 - -1.9 575,144 - +0.2 575,144 - +0.7 575,144 - -0.2 575,144 - -1.4 575,145 - -0.6 575,183 + -2.0 575,195 + -0.3 575,196 - -0.4 575,196 - -0.8 575,196 - -1.4 575,212 + -0.9 575,212 + -1.0 575,213 - -0.3 575,271 - -1.0 575,292 + -0.4 575,304 + -0.8 575,317 + -0.3 575,317 + -0.6 575,317 + -1.0 575,318 - +0.1 575,318 - -0.4 575,322 + -0.3 575,324 + +0.3 575,342 + -0.5 575,342 + -1.4 575,342 + -0.6 575,343 - -0.7 575,343 - -0.7 575,343 - -0.3 575,343 - -0.3 575,353 - -0.8 575,355 + -2.0 575,373 + +0.1 575,410 + -1.4 575,410 + -0.6 575,410 + -0.4 575,441 + +0.1 575,441 + -1.2 575,441 + +1.0 575,442 - -1.2 575,495 + -2.6 575,495 + -0.5 575,495 + -0.7 575,496 - -0.8 575,507 + -1.6 575,508 - -0.1 575,508 - -0.4 575,508 - -0.0 575,614 + GFF1925 0.12 -0.6 575,678 - GFF1925 0.16 -1.2 575,739 - GFF1925 0.19 +0.1 575,745 + GFF1925 0.19 -0.2 575,745 + GFF1925 0.19 -0.4 575,745 + GFF1925 0.19 +0.4 575,876 + GFF1925 0.26 -0.9 575,877 - GFF1925 0.26 -0.5 575,884 + GFF1925 0.26 -0.4 575,884 + GFF1925 0.26 -0.6 575,885 - GFF1925 0.26 +0.7 575,885 - GFF1925 0.26 -0.6 575,885 - GFF1925 0.26 +0.1 575,957 - GFF1925 0.30 -1.1 575,967 + GFF1925 0.30 -0.2 575,967 + GFF1925 0.30 -0.5 575,968 - GFF1925 0.30 -0.6 575,968 - GFF1925 0.30 +0.5 576,012 + GFF1925 0.33 -0.6 576,091 - GFF1925 0.37 -0.7
Or see this region's nucleotide sequence