Strain Fitness in Methylophilus sp. DMC18 around GFF1917

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1915 and GFF1916 are separated by 33 nucleotidesGFF1916 and GFF1917 are separated by 1 nucleotidesGFF1917 and GFF1918 are separated by 10 nucleotides GFF1915 - hypothetical protein, at 564,992 to 566,386 GFF1915 GFF1916 - hypothetical protein, at 566,420 to 567,316 GFF1916 GFF1917 - Formamidopyrimidine-DNA glycosylase, at 567,318 to 568,172 GFF1917 GFF1918 - hypothetical protein, at 568,183 to 569,634 GFF1918 Position (kb) 567 568 569Strain fitness (log2 ratio) -3 -2 -1 0 1at 567.314 kb on + strandat 567.314 kb on + strandat 567.315 kb on - strandat 567.315 kb on - strandat 567.315 kb on - strandat 567.315 kb on - strandat 567.329 kb on - strandat 567.397 kb on + strandat 567.491 kb on + strand, within GFF1917at 567.491 kb on + strand, within GFF1917at 567.492 kb on - strand, within GFF1917at 567.538 kb on + strand, within GFF1917at 567.538 kb on + strand, within GFF1917at 567.538 kb on + strand, within GFF1917at 567.571 kb on + strand, within GFF1917at 567.572 kb on - strand, within GFF1917at 567.611 kb on + strand, within GFF1917at 567.746 kb on + strand, within GFF1917at 567.756 kb on + strand, within GFF1917at 567.762 kb on + strand, within GFF1917at 567.763 kb on - strand, within GFF1917at 567.763 kb on - strand, within GFF1917at 567.763 kb on - strand, within GFF1917at 567.772 kb on + strand, within GFF1917at 567.773 kb on - strand, within GFF1917at 567.803 kb on + strand, within GFF1917at 567.803 kb on + strand, within GFF1917at 567.839 kb on + strand, within GFF1917at 567.839 kb on + strand, within GFF1917at 567.839 kb on + strand, within GFF1917at 567.839 kb on + strand, within GFF1917at 567.839 kb on + strand, within GFF1917at 567.843 kb on + strand, within GFF1917at 567.843 kb on + strand, within GFF1917at 567.843 kb on + strand, within GFF1917at 567.844 kb on - strand, within GFF1917at 567.844 kb on - strand, within GFF1917at 567.977 kb on + strand, within GFF1917at 567.977 kb on + strand, within GFF1917at 567.977 kb on + strand, within GFF1917at 568.018 kb on - strand, within GFF1917at 568.032 kb on + strand, within GFF1917at 568.032 kb on + strand, within GFF1917at 568.032 kb on + strand, within GFF1917at 568.033 kb on - strand, within GFF1917at 568.033 kb on - strand, within GFF1917at 568.033 kb on - strand, within GFF1917at 568.033 kb on - strand, within GFF1917at 568.033 kb on - strand, within GFF1917at 568.033 kb on - strand, within GFF1917at 568.067 kb on + strand, within GFF1917at 568.067 kb on + strand, within GFF1917at 568.068 kb on - strand, within GFF1917at 568.070 kb on - strand, within GFF1917at 568.070 kb on - strand, within GFF1917at 568.119 kb on + strandat 568.119 kb on + strandat 568.119 kb on + strandat 568.119 kb on + strandat 568.119 kb on + strandat 568.119 kb on + strandat 568.119 kb on + strandat 568.119 kb on + strandat 568.119 kb on + strandat 568.122 kb on - strandat 568.162 kb on + strandat 568.163 kb on - strandat 568.163 kb on - strandat 568.184 kb on + strandat 568.184 kb on + strandat 568.185 kb on - strandat 568.197 kb on + strandat 568.238 kb on + strandat 568.239 kb on - strandat 568.239 kb on - strandat 568.264 kb on + strandat 568.264 kb on + strandat 568.264 kb on + strandat 568.264 kb on + strandat 568.264 kb on + strandat 568.264 kb on + strandat 568.264 kb on + strandat 568.265 kb on - strandat 568.265 kb on - strandat 568.265 kb on - strandat 568.317 kb on + strandat 568.318 kb on - strandat 568.404 kb on + strand, within GFF1918at 568.532 kb on + strand, within GFF1918at 568.532 kb on + strand, within GFF1918at 568.532 kb on + strand, within GFF1918at 568.532 kb on + strand, within GFF1918at 568.533 kb on - strand, within GFF1918at 568.533 kb on - strand, within GFF1918at 568.533 kb on - strand, within GFF1918at 568.628 kb on + strand, within GFF1918at 568.628 kb on + strand, within GFF1918at 568.629 kb on - strand, within GFF1918at 568.639 kb on + strand, within GFF1918at 568.640 kb on - strand, within GFF1918at 568.669 kb on - strand, within GFF1918at 568.746 kb on + strand, within GFF1918at 568.746 kb on + strand, within GFF1918at 568.747 kb on - strand, within GFF1918at 568.771 kb on - strand, within GFF1918at 568.777 kb on - strand, within GFF1918at 568.777 kb on - strand, within GFF1918at 568.832 kb on + strand, within GFF1918at 568.832 kb on + strand, within GFF1918at 568.833 kb on - strand, within GFF1918at 568.833 kb on - strand, within GFF1918at 568.833 kb on - strand, within GFF1918at 568.869 kb on - strand, within GFF1918at 568.869 kb on - strand, within GFF1918at 568.969 kb on + strand, within GFF1918at 568.969 kb on + strand, within GFF1918at 568.970 kb on - strand, within GFF1918at 569.002 kb on + strand, within GFF1918at 569.002 kb on + strand, within GFF1918at 569.002 kb on + strand, within GFF1918at 569.003 kb on - strand, within GFF1918at 569.003 kb on - strand, within GFF1918at 569.043 kb on - strand, within GFF1918at 569.113 kb on - strand, within GFF1918at 569.127 kb on + strand, within GFF1918at 569.127 kb on + strand, within GFF1918at 569.128 kb on - strand, within GFF1918

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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567,314 + -1.2
567,314 + -0.0
567,315 - -1.7
567,315 - -0.5
567,315 - +0.3
567,315 - -0.8
567,329 - -0.8
567,397 + -0.9
567,491 + GFF1917 0.20 -0.5
567,491 + GFF1917 0.20 -1.9
567,492 - GFF1917 0.20 -1.0
567,538 + GFF1917 0.26 -1.9
567,538 + GFF1917 0.26 -1.4
567,538 + GFF1917 0.26 -1.1
567,571 + GFF1917 0.30 -2.4
567,572 - GFF1917 0.30 -2.5
567,611 + GFF1917 0.34 -1.6
567,746 + GFF1917 0.50 -0.5
567,756 + GFF1917 0.51 -0.3
567,762 + GFF1917 0.52 +0.4
567,763 - GFF1917 0.52 -0.1
567,763 - GFF1917 0.52 -0.0
567,763 - GFF1917 0.52 -1.2
567,772 + GFF1917 0.53 -2.2
567,773 - GFF1917 0.53 -0.7
567,803 + GFF1917 0.57 -1.4
567,803 + GFF1917 0.57 -0.1
567,839 + GFF1917 0.61 -1.1
567,839 + GFF1917 0.61 +0.0
567,839 + GFF1917 0.61 -0.7
567,839 + GFF1917 0.61 +0.5
567,839 + GFF1917 0.61 -1.0
567,843 + GFF1917 0.61 -1.4
567,843 + GFF1917 0.61 -2.2
567,843 + GFF1917 0.61 -1.1
567,844 - GFF1917 0.62 -0.1
567,844 - GFF1917 0.62 -0.5
567,977 + GFF1917 0.77 -0.6
567,977 + GFF1917 0.77 -1.3
567,977 + GFF1917 0.77 -0.6
568,018 - GFF1917 0.82 -0.4
568,032 + GFF1917 0.84 -1.0
568,032 + GFF1917 0.84 -0.9
568,032 + GFF1917 0.84 -0.0
568,033 - GFF1917 0.84 -1.5
568,033 - GFF1917 0.84 -1.6
568,033 - GFF1917 0.84 +0.2
568,033 - GFF1917 0.84 +0.4
568,033 - GFF1917 0.84 -2.9
568,033 - GFF1917 0.84 +0.1
568,067 + GFF1917 0.88 -1.8
568,067 + GFF1917 0.88 -2.2
568,068 - GFF1917 0.88 -0.0
568,070 - GFF1917 0.88 -1.4
568,070 - GFF1917 0.88 -0.0
568,119 + +0.6
568,119 + -0.4
568,119 + -1.2
568,119 + -0.8
568,119 + -0.6
568,119 + -0.6
568,119 + -0.6
568,119 + -0.0
568,119 + +0.1
568,122 - -1.4
568,162 + -0.6
568,163 - -1.4
568,163 - -1.0
568,184 + -0.4
568,184 + -0.9
568,185 - +0.1
568,197 + +0.4
568,238 + -0.0
568,239 - +0.5
568,239 - -0.3
568,264 + -1.9
568,264 + -0.3
568,264 + +0.4
568,264 + -1.0
568,264 + -0.9
568,264 + -1.9
568,264 + -0.9
568,265 - +0.3
568,265 - -1.0
568,265 - -0.9
568,317 + -1.4
568,318 - -1.3
568,404 + GFF1918 0.15 +0.8
568,532 + GFF1918 0.24 -0.0
568,532 + GFF1918 0.24 -1.4
568,532 + GFF1918 0.24 -1.6
568,532 + GFF1918 0.24 -0.1
568,533 - GFF1918 0.24 -1.4
568,533 - GFF1918 0.24 -0.9
568,533 - GFF1918 0.24 -0.4
568,628 + GFF1918 0.31 -1.9
568,628 + GFF1918 0.31 -1.9
568,629 - GFF1918 0.31 +0.6
568,639 + GFF1918 0.31 +0.6
568,640 - GFF1918 0.31 -1.4
568,669 - GFF1918 0.33 -0.2
568,746 + GFF1918 0.39 +1.0
568,746 + GFF1918 0.39 -0.4
568,747 - GFF1918 0.39 -0.7
568,771 - GFF1918 0.40 +0.3
568,777 - GFF1918 0.41 +1.0
568,777 - GFF1918 0.41 -1.4
568,832 + GFF1918 0.45 -1.0
568,832 + GFF1918 0.45 -1.0
568,833 - GFF1918 0.45 -0.9
568,833 - GFF1918 0.45 -0.4
568,833 - GFF1918 0.45 -0.9
568,869 - GFF1918 0.47 +0.3
568,869 - GFF1918 0.47 -1.0
568,969 + GFF1918 0.54 -0.3
568,969 + GFF1918 0.54 -0.7
568,970 - GFF1918 0.54 +0.1
569,002 + GFF1918 0.56 -1.4
569,002 + GFF1918 0.56 -1.0
569,002 + GFF1918 0.56 -0.6
569,003 - GFF1918 0.56 -1.2
569,003 - GFF1918 0.56 -0.5
569,043 - GFF1918 0.59 -0.6
569,113 - GFF1918 0.64 -1.4
569,127 + GFF1918 0.65 +1.0
569,127 + GFF1918 0.65 -0.2
569,128 - GFF1918 0.65 -1.5

Or see this region's nucleotide sequence