Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1788 and GFF1789 are separated by 122 nucleotides GFF1789 and GFF1790 are separated by 30 nucleotides GFF1790 and GFF1791 are separated by 35 nucleotides GFF1791 and GFF1792 are separated by 47 nucleotides
GFF1788 - Chaperone protein ClpB, at 430,925 to 433,561
GFF1788
GFF1789 - hypothetical protein, at 433,684 to 434,220
GFF1789
GFF1790 - hypothetical protein, at 434,251 to 434,670
GFF1790
GFF1791 - hypothetical protein, at 434,706 to 435,005
GFF1791
GFF1792 - Murein hydrolase activator EnvC, at 435,053 to 436,432
GFF1792
Position (kb) 433
434
435 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 432.779 kb on + strand, within GFF1788 at 432.780 kb on - strand, within GFF1788 at 432.882 kb on + strand, within GFF1788 at 432.883 kb on - strand, within GFF1788 at 432.883 kb on - strand, within GFF1788 at 432.883 kb on - strand, within GFF1788 at 432.883 kb on - strand, within GFF1788 at 432.883 kb on - strand, within GFF1788 at 432.883 kb on - strand, within GFF1788 at 432.883 kb on - strand, within GFF1788 at 432.954 kb on - strand, within GFF1788 at 432.999 kb on - strand, within GFF1788 at 433.009 kb on - strand, within GFF1788 at 433.048 kb on + strand, within GFF1788 at 433.108 kb on - strand, within GFF1788 at 433.108 kb on - strand, within GFF1788 at 433.115 kb on - strand, within GFF1788 at 433.120 kb on + strand, within GFF1788 at 433.120 kb on + strand, within GFF1788 at 433.121 kb on - strand, within GFF1788 at 433.130 kb on - strand, within GFF1788 at 433.141 kb on + strand, within GFF1788 at 433.184 kb on + strand, within GFF1788 at 433.184 kb on + strand, within GFF1788 at 433.184 kb on + strand, within GFF1788 at 433.185 kb on - strand, within GFF1788 at 433.516 kb on - strand at 433.516 kb on - strand at 433.591 kb on + strand at 433.591 kb on + strand at 433.591 kb on + strand at 433.592 kb on - strand at 433.637 kb on + strand at 433.637 kb on + strand at 433.643 kb on + strand at 433.643 kb on + strand at 433.644 kb on - strand at 433.657 kb on - strand at 433.669 kb on + strand at 433.683 kb on + strand at 433.683 kb on + strand at 433.683 kb on + strand at 433.683 kb on + strand at 433.683 kb on + strand at 433.785 kb on + strand, within GFF1789 at 433.785 kb on + strand, within GFF1789 at 433.785 kb on + strand, within GFF1789 at 433.987 kb on + strand, within GFF1789 at 433.987 kb on + strand, within GFF1789 at 433.987 kb on + strand, within GFF1789 at 433.987 kb on + strand, within GFF1789 at 433.989 kb on + strand, within GFF1789 at 433.990 kb on - strand, within GFF1789 at 434.040 kb on + strand, within GFF1789 at 434.081 kb on + strand, within GFF1789 at 434.098 kb on + strand, within GFF1789 at 434.098 kb on + strand, within GFF1789 at 434.164 kb on + strand, within GFF1789 at 434.164 kb on + strand, within GFF1789 at 434.234 kb on + strand at 434.234 kb on + strand at 434.234 kb on + strand at 434.240 kb on + strand at 434.277 kb on + strand at 434.277 kb on + strand at 434.277 kb on + strand at 434.277 kb on + strand at 434.277 kb on + strand at 434.278 kb on - strand at 434.278 kb on - strand at 434.278 kb on - strand at 434.278 kb on - strand at 434.278 kb on - strand at 434.280 kb on + strand at 434.281 kb on - strand at 434.302 kb on + strand, within GFF1790 at 434.302 kb on + strand, within GFF1790 at 434.302 kb on + strand, within GFF1790 at 434.302 kb on + strand, within GFF1790 at 434.303 kb on - strand, within GFF1790 at 434.303 kb on - strand, within GFF1790 at 434.321 kb on + strand, within GFF1790 at 434.322 kb on - strand, within GFF1790 at 434.322 kb on - strand, within GFF1790 at 434.370 kb on + strand, within GFF1790 at 434.371 kb on + strand, within GFF1790 at 434.371 kb on + strand, within GFF1790 at 434.371 kb on + strand, within GFF1790 at 434.372 kb on - strand, within GFF1790 at 434.372 kb on - strand, within GFF1790 at 434.372 kb on - strand, within GFF1790 at 434.372 kb on - strand, within GFF1790 at 434.372 kb on - strand, within GFF1790 at 434.372 kb on - strand, within GFF1790 at 434.372 kb on - strand, within GFF1790 at 434.413 kb on + strand, within GFF1790 at 434.490 kb on + strand, within GFF1790 at 434.491 kb on - strand, within GFF1790 at 434.567 kb on + strand, within GFF1790 at 434.668 kb on + strand at 434.682 kb on - strand at 434.682 kb on - strand at 434.682 kb on - strand at 434.682 kb on - strand at 434.688 kb on + strand at 434.688 kb on + strand at 434.689 kb on - strand at 434.689 kb on - strand at 434.689 kb on - strand at 434.700 kb on - strand at 434.700 kb on - strand at 434.712 kb on + strand at 434.728 kb on + strand at 434.729 kb on - strand at 434.741 kb on + strand, within GFF1791 at 434.789 kb on + strand, within GFF1791 at 434.789 kb on + strand, within GFF1791 at 434.789 kb on + strand, within GFF1791 at 434.790 kb on - strand, within GFF1791 at 434.790 kb on - strand, within GFF1791 at 434.790 kb on - strand, within GFF1791 at 434.900 kb on + strand, within GFF1791 at 434.901 kb on - strand, within GFF1791 at 434.912 kb on + strand, within GFF1791 at 434.913 kb on - strand, within GFF1791 at 434.913 kb on - strand, within GFF1791 at 434.943 kb on + strand, within GFF1791 at 434.943 kb on + strand, within GFF1791 at 434.944 kb on - strand, within GFF1791 at 434.944 kb on - strand, within GFF1791 at 434.944 kb on - strand, within GFF1791 at 435.000 kb on + strand at 435.000 kb on + strand at 435.003 kb on + strand at 435.003 kb on + strand at 435.004 kb on - strand at 435.004 kb on - strand at 435.004 kb on - strand at 435.054 kb on + strand at 435.064 kb on + strand at 435.064 kb on + strand at 435.064 kb on + strand at 435.065 kb on - strand at 435.065 kb on - strand at 435.065 kb on - strand at 435.065 kb on - strand at 435.111 kb on + strand at 435.111 kb on + strand at 435.111 kb on + strand at 435.111 kb on + strand at 435.114 kb on + strand at 435.114 kb on + strand at 435.115 kb on - strand at 435.142 kb on + strand at 435.164 kb on - strand at 435.164 kb on - strand at 435.175 kb on + strand at 435.175 kb on + strand at 435.198 kb on + strand, within GFF1792 at 435.198 kb on + strand, within GFF1792 at 435.198 kb on + strand, within GFF1792 at 435.198 kb on + strand, within GFF1792 at 435.198 kb on + strand, within GFF1792 at 435.198 kb on + strand, within GFF1792 at 435.199 kb on - strand, within GFF1792 at 435.199 kb on - strand, within GFF1792 at 435.199 kb on - strand, within GFF1792 at 435.215 kb on - strand, within GFF1792 at 435.219 kb on + strand, within GFF1792
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 432,779 + GFF1788 0.70 -0.4 432,780 - GFF1788 0.70 -0.1 432,882 + GFF1788 0.74 -2.1 432,883 - GFF1788 0.74 -0.9 432,883 - GFF1788 0.74 +0.1 432,883 - GFF1788 0.74 -2.1 432,883 - GFF1788 0.74 -0.8 432,883 - GFF1788 0.74 -0.3 432,883 - GFF1788 0.74 +0.5 432,883 - GFF1788 0.74 +0.1 432,954 - GFF1788 0.77 -0.1 432,999 - GFF1788 0.79 +0.6 433,009 - GFF1788 0.79 +0.2 433,048 + GFF1788 0.81 -2.6 433,108 - GFF1788 0.83 -0.6 433,108 - GFF1788 0.83 -0.8 433,115 - GFF1788 0.83 +0.7 433,120 + GFF1788 0.83 -0.3 433,120 + GFF1788 0.83 +0.5 433,121 - GFF1788 0.83 -2.9 433,130 - GFF1788 0.84 -1.9 433,141 + GFF1788 0.84 -0.4 433,184 + GFF1788 0.86 -0.7 433,184 + GFF1788 0.86 -2.2 433,184 + GFF1788 0.86 -1.1 433,185 - GFF1788 0.86 -0.1 433,516 - -0.6 433,516 - -0.3 433,591 + -0.8 433,591 + -0.5 433,591 + -1.9 433,592 - +0.4 433,637 + -0.8 433,637 + -0.6 433,643 + +0.2 433,643 + +0.8 433,644 - -1.3 433,657 - +0.6 433,669 + -0.1 433,683 + -1.6 433,683 + -1.1 433,683 + -1.1 433,683 + -1.1 433,683 + +0.4 433,785 + GFF1789 0.19 -1.4 433,785 + GFF1789 0.19 -1.4 433,785 + GFF1789 0.19 -2.1 433,987 + GFF1789 0.56 +0.5 433,987 + GFF1789 0.56 -0.1 433,987 + GFF1789 0.56 -1.1 433,987 + GFF1789 0.56 -0.8 433,989 + GFF1789 0.57 -0.1 433,990 - GFF1789 0.57 -2.1 434,040 + GFF1789 0.66 +0.2 434,081 + GFF1789 0.74 -1.3 434,098 + GFF1789 0.77 -0.3 434,098 + GFF1789 0.77 -0.6 434,164 + GFF1789 0.89 -0.5 434,164 + GFF1789 0.89 -1.1 434,234 + +0.3 434,234 + -1.1 434,234 + -1.6 434,240 + -1.6 434,277 + -0.5 434,277 + -1.1 434,277 + +0.1 434,277 + -0.2 434,277 + -0.6 434,278 - +0.5 434,278 - -0.3 434,278 - -1.4 434,278 - -0.9 434,278 - -1.9 434,280 + +0.2 434,281 - -0.3 434,302 + GFF1790 0.12 -0.6 434,302 + GFF1790 0.12 -1.6 434,302 + GFF1790 0.12 -0.4 434,302 + GFF1790 0.12 +1.4 434,303 - GFF1790 0.12 +0.5 434,303 - GFF1790 0.12 +0.7 434,321 + GFF1790 0.17 -0.3 434,322 - GFF1790 0.17 -1.1 434,322 - GFF1790 0.17 -0.9 434,370 + GFF1790 0.28 -0.2 434,371 + GFF1790 0.29 -0.4 434,371 + GFF1790 0.29 -1.6 434,371 + GFF1790 0.29 -0.9 434,372 - GFF1790 0.29 -0.2 434,372 - GFF1790 0.29 +0.2 434,372 - GFF1790 0.29 -1.5 434,372 - GFF1790 0.29 -1.6 434,372 - GFF1790 0.29 -0.2 434,372 - GFF1790 0.29 -1.6 434,372 - GFF1790 0.29 +0.5 434,413 + GFF1790 0.39 -1.1 434,490 + GFF1790 0.57 +1.3 434,491 - GFF1790 0.57 -0.1 434,567 + GFF1790 0.75 -0.3 434,668 + -0.6 434,682 - +0.7 434,682 - -1.6 434,682 - -0.2 434,682 - -1.4 434,688 + +1.0 434,688 + -1.2 434,689 - -0.0 434,689 - -0.2 434,689 - -1.4 434,700 - -1.3 434,700 - -0.6 434,712 + -1.0 434,728 + +0.0 434,729 - -0.0 434,741 + GFF1791 0.12 -1.3 434,789 + GFF1791 0.28 +1.0 434,789 + GFF1791 0.28 -1.0 434,789 + GFF1791 0.28 -0.0 434,790 - GFF1791 0.28 -0.6 434,790 - GFF1791 0.28 -2.1 434,790 - GFF1791 0.28 -1.0 434,900 + GFF1791 0.65 -0.6 434,901 - GFF1791 0.65 -0.5 434,912 + GFF1791 0.69 -0.6 434,913 - GFF1791 0.69 -0.5 434,913 - GFF1791 0.69 -1.4 434,943 + GFF1791 0.79 -0.5 434,943 + GFF1791 0.79 -0.3 434,944 - GFF1791 0.79 +0.4 434,944 - GFF1791 0.79 -1.0 434,944 - GFF1791 0.79 -1.0 435,000 + -0.3 435,000 + -1.2 435,003 + -0.0 435,003 + +0.1 435,004 - +0.7 435,004 - -0.9 435,004 - -0.7 435,054 + -1.0 435,064 + -0.8 435,064 + -0.3 435,064 + -0.4 435,065 - -0.9 435,065 - -0.3 435,065 - -0.5 435,065 - -1.0 435,111 + -0.3 435,111 + -1.0 435,111 + +0.1 435,111 + +0.6 435,114 + +0.3 435,114 + -0.4 435,115 - +0.2 435,142 + -1.0 435,164 - -0.0 435,164 - -0.4 435,175 + -0.4 435,175 + -1.0 435,198 + GFF1792 0.11 +1.0 435,198 + GFF1792 0.11 -0.0 435,198 + GFF1792 0.11 -1.2 435,198 + GFF1792 0.11 +1.4 435,198 + GFF1792 0.11 -0.4 435,198 + GFF1792 0.11 -0.0 435,199 - GFF1792 0.11 -0.9 435,199 - GFF1792 0.11 +0.1 435,199 - GFF1792 0.11 -0.5 435,215 - GFF1792 0.12 -1.1 435,219 + GFF1792 0.12 -0.9
Or see this region's nucleotide sequence