Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1726 and GFF1727 are separated by 105 nucleotides GFF1727 and GFF1728 are separated by 2 nucleotides GFF1728 and GFF1729 are separated by 14 nucleotides GFF1729 and GFF1730 are separated by 188 nucleotides
GFF1726 - Protein YiiM, at 361,564 to 362,211
GFF1726
GFF1727 - hypothetical protein, at 362,317 to 362,766
GFF1727
GFF1728 - Endonuclease III, at 362,769 to 363,428
GFF1728
GFF1729 - Ion-translocating oxidoreductase complex subunit B, at 363,443 to 364,171
GFF1729
GFF1730 - 4-hydroxy-tetrahydrodipicolinate synthase, at 364,360 to 365,253
GFF1730
Position (kb) 362
363
364 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 361.775 kb on + strand, within GFF1726 at 361.776 kb on - strand, within GFF1726 at 361.876 kb on + strand, within GFF1726 at 361.876 kb on + strand, within GFF1726 at 361.876 kb on + strand, within GFF1726 at 361.877 kb on - strand, within GFF1726 at 361.877 kb on - strand, within GFF1726 at 361.877 kb on - strand, within GFF1726 at 361.942 kb on + strand, within GFF1726 at 361.981 kb on - strand, within GFF1726 at 362.013 kb on - strand, within GFF1726 at 362.033 kb on + strand, within GFF1726 at 362.033 kb on + strand, within GFF1726 at 362.033 kb on + strand, within GFF1726 at 362.033 kb on + strand, within GFF1726 at 362.033 kb on + strand, within GFF1726 at 362.033 kb on + strand, within GFF1726 at 362.033 kb on + strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.133 kb on + strand, within GFF1726 at 362.133 kb on + strand, within GFF1726 at 362.134 kb on - strand, within GFF1726 at 362.135 kb on + strand, within GFF1726 at 362.136 kb on - strand, within GFF1726 at 362.203 kb on + strand at 362.203 kb on + strand at 362.203 kb on + strand at 362.203 kb on + strand at 362.204 kb on - strand at 362.211 kb on + strand at 362.212 kb on - strand at 362.212 kb on - strand at 362.212 kb on - strand at 362.219 kb on + strand at 362.219 kb on + strand at 362.220 kb on - strand at 362.220 kb on - strand at 362.271 kb on + strand at 362.272 kb on - strand at 362.275 kb on - strand at 362.275 kb on - strand at 362.288 kb on + strand at 362.289 kb on - strand at 362.289 kb on - strand at 362.300 kb on + strand at 362.300 kb on + strand at 362.301 kb on - strand at 362.301 kb on - strand at 362.351 kb on - strand at 362.410 kb on - strand, within GFF1727 at 362.588 kb on + strand, within GFF1727 at 362.589 kb on - strand, within GFF1727 at 362.589 kb on - strand, within GFF1727 at 362.646 kb on + strand, within GFF1727 at 362.647 kb on - strand, within GFF1727 at 362.647 kb on - strand, within GFF1727 at 362.647 kb on - strand, within GFF1727 at 362.647 kb on - strand, within GFF1727 at 362.823 kb on + strand at 362.824 kb on - strand at 362.853 kb on - strand, within GFF1728 at 362.873 kb on + strand, within GFF1728 at 362.873 kb on + strand, within GFF1728 at 362.873 kb on + strand, within GFF1728 at 362.874 kb on - strand, within GFF1728 at 362.874 kb on - strand, within GFF1728 at 362.874 kb on - strand, within GFF1728 at 362.876 kb on - strand, within GFF1728 at 362.924 kb on + strand, within GFF1728 at 362.961 kb on + strand, within GFF1728 at 362.962 kb on - strand, within GFF1728 at 362.962 kb on - strand, within GFF1728 at 362.962 kb on - strand, within GFF1728 at 363.006 kb on + strand, within GFF1728 at 363.007 kb on - strand, within GFF1728 at 363.007 kb on - strand, within GFF1728 at 363.137 kb on + strand, within GFF1728 at 363.137 kb on + strand, within GFF1728 at 363.184 kb on + strand, within GFF1728 at 363.184 kb on + strand, within GFF1728 at 363.184 kb on + strand, within GFF1728 at 363.185 kb on - strand, within GFF1728 at 363.192 kb on + strand, within GFF1728 at 363.204 kb on - strand, within GFF1728 at 363.205 kb on + strand, within GFF1728 at 363.345 kb on - strand, within GFF1728 at 363.345 kb on - strand, within GFF1728 at 363.345 kb on - strand, within GFF1728 at 363.350 kb on + strand, within GFF1728 at 363.350 kb on + strand, within GFF1728 at 363.350 kb on + strand, within GFF1728 at 363.350 kb on + strand, within GFF1728 at 363.350 kb on + strand, within GFF1728 at 363.350 kb on + strand, within GFF1728 at 363.351 kb on - strand, within GFF1728 at 363.351 kb on - strand, within GFF1728 at 363.351 kb on - strand, within GFF1728 at 363.351 kb on - strand, within GFF1728 at 363.351 kb on - strand, within GFF1728 at 363.351 kb on - strand, within GFF1728 at 363.351 kb on - strand, within GFF1728 at 363.351 kb on - strand, within GFF1728 at 363.351 kb on - strand, within GFF1728 at 363.352 kb on + strand, within GFF1728 at 363.353 kb on - strand, within GFF1728 at 363.353 kb on - strand, within GFF1728 at 363.353 kb on - strand, within GFF1728 at 363.353 kb on - strand, within GFF1728 at 363.444 kb on + strand at 363.445 kb on - strand at 363.445 kb on - strand at 363.458 kb on - strand at 363.459 kb on - strand at 363.472 kb on + strand at 363.473 kb on - strand at 363.476 kb on - strand at 363.588 kb on + strand, within GFF1729 at 363.588 kb on + strand, within GFF1729 at 363.589 kb on - strand, within GFF1729 at 363.589 kb on - strand, within GFF1729 at 363.589 kb on - strand, within GFF1729 at 363.743 kb on + strand, within GFF1729 at 363.744 kb on - strand, within GFF1729 at 363.829 kb on + strand, within GFF1729 at 363.830 kb on - strand, within GFF1729 at 363.830 kb on - strand, within GFF1729 at 363.838 kb on + strand, within GFF1729 at 363.839 kb on - strand, within GFF1729 at 363.839 kb on - strand, within GFF1729 at 363.839 kb on - strand, within GFF1729 at 363.919 kb on - strand, within GFF1729 at 363.950 kb on + strand, within GFF1729 at 363.950 kb on + strand, within GFF1729 at 363.951 kb on - strand, within GFF1729 at 364.017 kb on + strand, within GFF1729 at 364.033 kb on + strand, within GFF1729 at 364.033 kb on + strand, within GFF1729 at 364.034 kb on - strand, within GFF1729 at 364.034 kb on - strand, within GFF1729 at 364.034 kb on - strand, within GFF1729 at 364.036 kb on - strand, within GFF1729 at 364.098 kb on - strand, within GFF1729 at 364.124 kb on + strand at 364.190 kb on - strand at 364.207 kb on + strand at 364.209 kb on + strand at 364.210 kb on - strand at 364.226 kb on + strand at 364.265 kb on - strand at 364.265 kb on - strand at 364.281 kb on + strand at 364.282 kb on - strand at 364.282 kb on - strand at 364.330 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 361,775 + GFF1726 0.33 -0.5 361,776 - GFF1726 0.33 +0.2 361,876 + GFF1726 0.48 -0.3 361,876 + GFF1726 0.48 -0.8 361,876 + GFF1726 0.48 -1.9 361,877 - GFF1726 0.48 +0.3 361,877 - GFF1726 0.48 +0.1 361,877 - GFF1726 0.48 +1.3 361,942 + GFF1726 0.58 -0.2 361,981 - GFF1726 0.64 -1.4 362,013 - GFF1726 0.69 -0.1 362,033 + GFF1726 0.72 -0.8 362,033 + GFF1726 0.72 -1.9 362,033 + GFF1726 0.72 -0.5 362,033 + GFF1726 0.72 -1.4 362,033 + GFF1726 0.72 -0.4 362,033 + GFF1726 0.72 -0.5 362,033 + GFF1726 0.72 -1.9 362,034 - GFF1726 0.73 +0.1 362,034 - GFF1726 0.73 -0.1 362,034 - GFF1726 0.73 -1.0 362,034 - GFF1726 0.73 -0.1 362,034 - GFF1726 0.73 -0.1 362,034 - GFF1726 0.73 -0.8 362,034 - GFF1726 0.73 +0.9 362,034 - GFF1726 0.73 -1.4 362,034 - GFF1726 0.73 +0.3 362,034 - GFF1726 0.73 -0.1 362,034 - GFF1726 0.73 -0.4 362,034 - GFF1726 0.73 +0.1 362,034 - GFF1726 0.73 +0.7 362,034 - GFF1726 0.73 -0.6 362,034 - GFF1726 0.73 -0.4 362,034 - GFF1726 0.73 -0.2 362,034 - GFF1726 0.73 -0.7 362,133 + GFF1726 0.88 +0.1 362,133 + GFF1726 0.88 +0.7 362,134 - GFF1726 0.88 -1.2 362,135 + GFF1726 0.88 +0.9 362,136 - GFF1726 0.88 -1.2 362,203 + -0.3 362,203 + -0.9 362,203 + -0.1 362,203 + -0.1 362,204 - -0.4 362,211 + -0.9 362,212 - +0.7 362,212 - +0.2 362,212 - -0.3 362,219 + -1.4 362,219 + -1.2 362,220 - +0.0 362,220 - -0.3 362,271 + -1.9 362,272 - -0.5 362,275 - +0.3 362,275 - -0.1 362,288 + +0.6 362,289 - -0.8 362,289 - +0.9 362,300 + -0.1 362,300 + +0.0 362,301 - -1.0 362,301 - +0.3 362,351 - -0.1 362,410 - GFF1727 0.21 -1.1 362,588 + GFF1727 0.60 -0.9 362,589 - GFF1727 0.60 -3.6 362,589 - GFF1727 0.60 -1.1 362,646 + GFF1727 0.73 -1.1 362,647 - GFF1727 0.73 -0.1 362,647 - GFF1727 0.73 -1.9 362,647 - GFF1727 0.73 -1.4 362,647 - GFF1727 0.73 -1.7 362,823 + +0.3 362,824 - -1.7 362,853 - GFF1728 0.13 -0.1 362,873 + GFF1728 0.16 +0.9 362,873 + GFF1728 0.16 -0.7 362,873 + GFF1728 0.16 -1.4 362,874 - GFF1728 0.16 -0.8 362,874 - GFF1728 0.16 -1.1 362,874 - GFF1728 0.16 -0.9 362,876 - GFF1728 0.16 -1.7 362,924 + GFF1728 0.23 -2.1 362,961 + GFF1728 0.29 -1.1 362,962 - GFF1728 0.29 -0.3 362,962 - GFF1728 0.29 -1.1 362,962 - GFF1728 0.29 -1.1 363,006 + GFF1728 0.36 +0.9 363,007 - GFF1728 0.36 -0.6 363,007 - GFF1728 0.36 -1.4 363,137 + GFF1728 0.56 -0.5 363,137 + GFF1728 0.56 -0.7 363,184 + GFF1728 0.63 -2.9 363,184 + GFF1728 0.63 -0.9 363,184 + GFF1728 0.63 -2.8 363,185 - GFF1728 0.63 -0.7 363,192 + GFF1728 0.64 -1.2 363,204 - GFF1728 0.66 -0.7 363,205 + GFF1728 0.66 -1.4 363,345 - GFF1728 0.87 -1.4 363,345 - GFF1728 0.87 -1.1 363,345 - GFF1728 0.87 -0.2 363,350 + GFF1728 0.88 -1.7 363,350 + GFF1728 0.88 -1.1 363,350 + GFF1728 0.88 -0.1 363,350 + GFF1728 0.88 -1.1 363,350 + GFF1728 0.88 -1.7 363,350 + GFF1728 0.88 +0.5 363,351 - GFF1728 0.88 -1.1 363,351 - GFF1728 0.88 +0.0 363,351 - GFF1728 0.88 -1.6 363,351 - GFF1728 0.88 +0.3 363,351 - GFF1728 0.88 -0.7 363,351 - GFF1728 0.88 +0.9 363,351 - GFF1728 0.88 -1.7 363,351 - GFF1728 0.88 -1.1 363,351 - GFF1728 0.88 -1.1 363,352 + GFF1728 0.88 -1.4 363,353 - GFF1728 0.88 -0.3 363,353 - GFF1728 0.88 -1.1 363,353 - GFF1728 0.88 -0.1 363,353 - GFF1728 0.88 -0.5 363,444 + +0.3 363,445 - -1.1 363,445 - -0.8 363,458 - -0.7 363,459 - -1.4 363,472 + -0.5 363,473 - -1.9 363,476 - -0.4 363,588 + GFF1729 0.20 -1.1 363,588 + GFF1729 0.20 -0.1 363,589 - GFF1729 0.20 -0.1 363,589 - GFF1729 0.20 -1.1 363,589 - GFF1729 0.20 -0.2 363,743 + GFF1729 0.41 -1.0 363,744 - GFF1729 0.41 -0.6 363,829 + GFF1729 0.53 +0.8 363,830 - GFF1729 0.53 -0.9 363,830 - GFF1729 0.53 +1.2 363,838 + GFF1729 0.54 -0.7 363,839 - GFF1729 0.54 -0.8 363,839 - GFF1729 0.54 -0.8 363,839 - GFF1729 0.54 -1.1 363,919 - GFF1729 0.65 -0.3 363,950 + GFF1729 0.70 -0.6 363,950 + GFF1729 0.70 -1.2 363,951 - GFF1729 0.70 -0.5 364,017 + GFF1729 0.79 -0.7 364,033 + GFF1729 0.81 +0.6 364,033 + GFF1729 0.81 -0.3 364,034 - GFF1729 0.81 -0.4 364,034 - GFF1729 0.81 +0.1 364,034 - GFF1729 0.81 -0.8 364,036 - GFF1729 0.81 -0.3 364,098 - GFF1729 0.90 -1.4 364,124 + -1.8 364,190 - -1.9 364,207 + -1.0 364,209 + -1.4 364,210 - +0.9 364,226 + -1.7 364,265 - -0.6 364,265 - -0.7 364,281 + -0.3 364,282 - -1.7 364,282 - -0.7 364,330 - +0.5
Or see this region's nucleotide sequence