Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF166 and GFF167 are separated by 34 nucleotides GFF167 and GFF168 are separated by 10 nucleotides GFF168 and GFF169 are separated by 369 nucleotides
GFF166 - GDP-perosamine synthase, at 161,131 to 162,312
GFF166
GFF167 - hypothetical protein, at 162,347 to 163,219
GFF167
GFF168 - hypothetical protein, at 163,230 to 163,460
GFF168
GFF169 - hypothetical protein, at 163,830 to 166,169
GFF169
Position (kb) 163
164 Strain fitness (log2 ratio) -2
-1
0
1 at 162.304 kb on + strand at 162.304 kb on + strand at 162.305 kb on - strand at 162.305 kb on - strand at 162.310 kb on + strand at 162.341 kb on + strand at 162.341 kb on + strand at 162.341 kb on + strand at 162.341 kb on + strand at 162.342 kb on - strand at 162.342 kb on - strand at 162.342 kb on - strand at 162.353 kb on - strand at 162.614 kb on + strand, within GFF167 at 162.698 kb on + strand, within GFF167 at 162.698 kb on + strand, within GFF167 at 162.699 kb on - strand, within GFF167 at 162.700 kb on + strand, within GFF167 at 162.700 kb on + strand, within GFF167 at 162.701 kb on - strand, within GFF167 at 162.750 kb on + strand, within GFF167 at 162.794 kb on + strand, within GFF167 at 162.794 kb on + strand, within GFF167 at 162.794 kb on + strand, within GFF167 at 162.819 kb on + strand, within GFF167 at 162.819 kb on + strand, within GFF167 at 162.820 kb on - strand, within GFF167 at 162.820 kb on - strand, within GFF167 at 162.893 kb on + strand, within GFF167 at 162.895 kb on + strand, within GFF167 at 162.895 kb on + strand, within GFF167 at 162.898 kb on + strand, within GFF167 at 162.898 kb on + strand, within GFF167 at 162.898 kb on + strand, within GFF167 at 162.899 kb on - strand, within GFF167 at 162.914 kb on + strand, within GFF167 at 162.915 kb on - strand, within GFF167 at 162.915 kb on - strand, within GFF167 at 163.038 kb on - strand, within GFF167 at 163.038 kb on - strand, within GFF167 at 163.137 kb on + strand at 163.138 kb on - strand at 163.138 kb on - strand at 163.240 kb on - strand at 163.240 kb on - strand at 163.296 kb on - strand, within GFF168 at 163.432 kb on - strand, within GFF168 at 163.432 kb on - strand, within GFF168 at 163.432 kb on - strand, within GFF168 at 163.472 kb on + strand at 163.478 kb on - strand at 163.495 kb on + strand at 163.496 kb on - strand at 163.496 kb on - strand at 163.497 kb on + strand at 163.497 kb on + strand at 163.497 kb on + strand at 163.499 kb on + strand at 163.499 kb on + strand at 163.499 kb on + strand at 163.499 kb on + strand at 163.499 kb on + strand at 163.499 kb on + strand at 163.499 kb on + strand at 163.499 kb on + strand at 163.499 kb on + strand at 163.499 kb on + strand at 163.500 kb on - strand at 163.500 kb on - strand at 163.500 kb on - strand at 163.500 kb on - strand at 163.500 kb on - strand at 163.500 kb on - strand at 163.500 kb on - strand at 163.500 kb on - strand at 163.500 kb on - strand at 163.633 kb on - strand at 163.718 kb on + strand at 163.718 kb on + strand at 163.718 kb on + strand at 163.719 kb on - strand at 163.719 kb on - strand at 163.719 kb on - strand at 163.730 kb on - strand at 163.730 kb on - strand at 163.735 kb on + strand at 163.735 kb on + strand at 163.735 kb on + strand at 163.735 kb on + strand at 163.735 kb on + strand at 163.735 kb on + strand at 163.736 kb on - strand at 163.736 kb on - strand at 163.736 kb on - strand at 163.736 kb on - strand at 163.736 kb on - strand at 163.736 kb on - strand at 163.738 kb on + strand at 163.738 kb on + strand at 163.739 kb on - strand at 163.756 kb on + strand at 163.766 kb on - strand at 163.766 kb on - strand at 163.769 kb on + strand at 163.769 kb on + strand at 163.769 kb on + strand at 163.776 kb on + strand at 163.789 kb on + strand at 163.789 kb on + strand at 163.807 kb on + strand at 163.813 kb on + strand at 163.814 kb on - strand at 163.825 kb on + strand at 163.826 kb on - strand at 163.847 kb on + strand at 163.847 kb on + strand at 163.847 kb on + strand at 163.849 kb on + strand at 163.850 kb on - strand at 163.944 kb on + strand at 163.958 kb on + strand at 163.958 kb on + strand at 163.958 kb on + strand at 163.958 kb on + strand at 163.959 kb on - strand at 163.992 kb on + strand at 163.993 kb on - strand at 164.007 kb on + strand at 164.008 kb on - strand at 164.008 kb on - strand at 164.009 kb on + strand at 164.009 kb on + strand at 164.009 kb on + strand at 164.009 kb on + strand at 164.009 kb on + strand at 164.009 kb on + strand at 164.009 kb on + strand at 164.009 kb on + strand at 164.010 kb on - strand at 164.010 kb on - strand at 164.010 kb on - strand at 164.010 kb on - strand at 164.010 kb on - strand at 164.010 kb on - strand at 164.010 kb on - strand at 164.010 kb on - strand at 164.099 kb on + strand, within GFF169 at 164.100 kb on - strand, within GFF169 at 164.100 kb on - strand, within GFF169 at 164.126 kb on + strand, within GFF169 at 164.126 kb on + strand, within GFF169 at 164.127 kb on - strand, within GFF169 at 164.127 kb on - strand, within GFF169 at 164.127 kb on - strand, within GFF169 at 164.141 kb on - strand, within GFF169 at 164.141 kb on - strand, within GFF169 at 164.196 kb on + strand, within GFF169 at 164.197 kb on - strand, within GFF169 at 164.197 kb on - strand, within GFF169 at 164.204 kb on + strand, within GFF169 at 164.204 kb on + strand, within GFF169 at 164.204 kb on + strand, within GFF169 at 164.204 kb on + strand, within GFF169 at 164.204 kb on + strand, within GFF169 at 164.204 kb on + strand, within GFF169 at 164.204 kb on + strand, within GFF169 at 164.204 kb on + strand, within GFF169 at 164.205 kb on - strand, within GFF169 at 164.205 kb on - strand, within GFF169 at 164.205 kb on - strand, within GFF169 at 164.205 kb on - strand, within GFF169 at 164.205 kb on - strand, within GFF169 at 164.205 kb on - strand, within GFF169 at 164.205 kb on - strand, within GFF169 at 164.205 kb on - strand, within GFF169 at 164.208 kb on + strand, within GFF169 at 164.209 kb on - strand, within GFF169 at 164.231 kb on + strand, within GFF169 at 164.231 kb on + strand, within GFF169 at 164.231 kb on + strand, within GFF169 at 164.231 kb on + strand, within GFF169 at 164.232 kb on - strand, within GFF169 at 164.262 kb on + strand, within GFF169 at 164.262 kb on + strand, within GFF169 at 164.262 kb on + strand, within GFF169 at 164.263 kb on - strand, within GFF169 at 164.263 kb on - strand, within GFF169 at 164.263 kb on - strand, within GFF169 at 164.263 kb on - strand, within GFF169 at 164.263 kb on - strand, within GFF169 at 164.263 kb on - strand, within GFF169 at 164.271 kb on + strand, within GFF169 at 164.340 kb on + strand, within GFF169 at 164.341 kb on - strand, within GFF169 at 164.370 kb on + strand, within GFF169 at 164.371 kb on - strand, within GFF169
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 162,304 + +0.0 162,304 + -1.0 162,305 - -0.7 162,305 - -0.6 162,310 + -1.0 162,341 + -0.8 162,341 + -0.4 162,341 + -2.1 162,341 + -1.8 162,342 - -0.2 162,342 - -1.2 162,342 - -0.4 162,353 - +1.0 162,614 + GFF167 0.31 +0.6 162,698 + GFF167 0.40 -1.1 162,698 + GFF167 0.40 -1.6 162,699 - GFF167 0.40 -0.1 162,700 + GFF167 0.40 -0.1 162,700 + GFF167 0.40 -1.4 162,701 - GFF167 0.41 -0.4 162,750 + GFF167 0.46 +0.4 162,794 + GFF167 0.51 -1.0 162,794 + GFF167 0.51 +0.0 162,794 + GFF167 0.51 -0.6 162,819 + GFF167 0.54 -0.5 162,819 + GFF167 0.54 -0.3 162,820 - GFF167 0.54 -1.3 162,820 - GFF167 0.54 -0.6 162,893 + GFF167 0.63 +0.4 162,895 + GFF167 0.63 -0.4 162,895 + GFF167 0.63 +0.5 162,898 + GFF167 0.63 -1.0 162,898 + GFF167 0.63 -0.6 162,898 + GFF167 0.63 -1.6 162,899 - GFF167 0.63 +0.6 162,914 + GFF167 0.65 -0.4 162,915 - GFF167 0.65 -1.0 162,915 - GFF167 0.65 -1.8 163,038 - GFF167 0.79 -0.6 163,038 - GFF167 0.79 +0.0 163,137 + -0.3 163,138 - -1.3 163,138 - +0.5 163,240 - -1.0 163,240 - +0.9 163,296 - GFF168 0.29 -0.6 163,432 - GFF168 0.87 -1.2 163,432 - GFF168 0.87 -0.3 163,432 - GFF168 0.87 -1.8 163,472 + -1.0 163,478 - +0.3 163,495 + +0.7 163,496 - -1.0 163,496 - -1.6 163,497 + -0.2 163,497 + -1.3 163,497 + -1.3 163,499 + +0.1 163,499 + -0.4 163,499 + -0.5 163,499 + -1.2 163,499 + +0.2 163,499 + -0.7 163,499 + +0.0 163,499 + -0.1 163,499 + -0.3 163,499 + -0.6 163,500 - -1.7 163,500 - -0.5 163,500 - -1.4 163,500 - +0.0 163,500 - -0.6 163,500 - +0.1 163,500 - +0.1 163,500 - -2.3 163,500 - -1.4 163,633 - -0.1 163,718 + -1.0 163,718 + -0.7 163,718 + -0.7 163,719 - -0.3 163,719 - -0.3 163,719 - -0.3 163,730 - +0.3 163,730 - -0.9 163,735 + -0.6 163,735 + -2.1 163,735 + -0.3 163,735 + -2.0 163,735 + -0.7 163,735 + +0.3 163,736 - -0.3 163,736 - +0.3 163,736 - +1.0 163,736 - -0.8 163,736 - -1.3 163,736 - +0.3 163,738 + +0.7 163,738 + -1.0 163,739 - -1.4 163,756 + +0.1 163,766 - +0.1 163,766 - -0.4 163,769 + -1.7 163,769 + +0.0 163,769 + -1.7 163,776 + +0.8 163,789 + -1.4 163,789 + -1.3 163,807 + +0.4 163,813 + -0.3 163,814 - +0.0 163,825 + -1.0 163,826 - +0.2 163,847 + -1.0 163,847 + -1.0 163,847 + -0.3 163,849 + -0.2 163,850 - -0.6 163,944 + -1.0 163,958 + -2.4 163,958 + -1.3 163,958 + -1.8 163,958 + -1.1 163,959 - -0.3 163,992 + -0.7 163,993 - -0.9 164,007 + -0.5 164,008 - -1.0 164,008 - -0.8 164,009 + -2.4 164,009 + -1.8 164,009 + -0.7 164,009 + +0.0 164,009 + -2.0 164,009 + -0.8 164,009 + +0.0 164,009 + -0.7 164,010 - +0.2 164,010 - -0.3 164,010 - -1.7 164,010 - -0.3 164,010 - -1.0 164,010 - -0.1 164,010 - -1.0 164,010 - -0.8 164,099 + GFF169 0.11 -1.0 164,100 - GFF169 0.12 +0.4 164,100 - GFF169 0.12 -0.6 164,126 + GFF169 0.13 -2.0 164,126 + GFF169 0.13 -0.1 164,127 - GFF169 0.13 -0.7 164,127 - GFF169 0.13 -0.1 164,127 - GFF169 0.13 -0.8 164,141 - GFF169 0.13 -1.1 164,141 - GFF169 0.13 -1.1 164,196 + GFF169 0.16 -1.1 164,197 - GFF169 0.16 -1.0 164,197 - GFF169 0.16 +0.3 164,204 + GFF169 0.16 -2.1 164,204 + GFF169 0.16 -1.0 164,204 + GFF169 0.16 +0.8 164,204 + GFF169 0.16 +0.0 164,204 + GFF169 0.16 -0.2 164,204 + GFF169 0.16 -1.1 164,204 + GFF169 0.16 +0.1 164,204 + GFF169 0.16 -2.6 164,205 - GFF169 0.16 -1.0 164,205 - GFF169 0.16 +0.6 164,205 - GFF169 0.16 -0.9 164,205 - GFF169 0.16 -1.7 164,205 - GFF169 0.16 -0.8 164,205 - GFF169 0.16 +0.5 164,205 - GFF169 0.16 +0.0 164,205 - GFF169 0.16 +0.2 164,208 + GFF169 0.16 -2.0 164,209 - GFF169 0.16 +0.2 164,231 + GFF169 0.17 +0.0 164,231 + GFF169 0.17 -0.8 164,231 + GFF169 0.17 -1.3 164,231 + GFF169 0.17 -1.7 164,232 - GFF169 0.17 -2.0 164,262 + GFF169 0.18 -0.3 164,262 + GFF169 0.18 +0.3 164,262 + GFF169 0.18 -0.4 164,263 - GFF169 0.19 -0.6 164,263 - GFF169 0.19 -1.2 164,263 - GFF169 0.19 -0.8 164,263 - GFF169 0.19 +0.0 164,263 - GFF169 0.19 -1.8 164,263 - GFF169 0.19 +0.1 164,271 + GFF169 0.19 -1.6 164,340 + GFF169 0.22 -0.6 164,341 - GFF169 0.22 -1.0 164,370 + GFF169 0.23 -1.8 164,371 - GFF169 0.23 -1.6
Or see this region's nucleotide sequence