Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1502 and GFF1503 are separated by 39 nucleotides GFF1503 and GFF1504 are separated by 251 nucleotides GFF1504 and GFF1505 are separated by 21 nucleotides GFF1505 and GFF1506 overlap by 11 nucleotides
GFF1502 - DNA-binding transcriptional regulator NtrC, at 146,544 to 147,806
GFF1502
GFF1503 - hypothetical protein, at 147,846 to 148,226
GFF1503
GFF1504 - hypothetical protein, at 148,478 to 148,669
GFF1504
GFF1505 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 148,691 to 149,128
GFF1505
GFF1506 - hypothetical protein, at 149,118 to 149,909
GFF1506
Position (kb) 147
148
149 Strain fitness (log2 ratio) -2
-1
0
1 at 147.847 kb on + strand at 147.848 kb on - strand at 147.891 kb on - strand, within GFF1503 at 147.976 kb on - strand, within GFF1503 at 148.018 kb on + strand, within GFF1503 at 148.124 kb on - strand, within GFF1503 at 148.124 kb on - strand, within GFF1503 at 148.136 kb on + strand, within GFF1503 at 148.140 kb on + strand, within GFF1503 at 148.141 kb on - strand, within GFF1503 at 148.226 kb on + strand at 148.250 kb on - strand at 148.252 kb on + strand at 148.253 kb on - strand at 148.261 kb on + strand at 148.261 kb on + strand at 148.262 kb on - strand at 148.262 kb on - strand at 148.262 kb on - strand at 148.262 kb on - strand at 148.262 kb on - strand at 148.262 kb on - strand at 148.262 kb on - strand at 148.263 kb on - strand at 148.291 kb on + strand at 148.291 kb on + strand at 148.291 kb on + strand at 148.292 kb on - strand at 148.367 kb on + strand at 148.367 kb on + strand at 148.367 kb on + strand at 148.367 kb on + strand at 148.367 kb on + strand at 148.367 kb on + strand at 148.368 kb on - strand at 148.368 kb on - strand at 148.368 kb on - strand at 148.570 kb on + strand, within GFF1504 at 148.602 kb on + strand, within GFF1504 at 148.602 kb on + strand, within GFF1504 at 148.603 kb on - strand, within GFF1504 at 148.761 kb on + strand, within GFF1505 at 148.809 kb on + strand, within GFF1505 at 148.826 kb on + strand, within GFF1505 at 148.865 kb on + strand, within GFF1505 at 148.897 kb on + strand, within GFF1505 at 148.898 kb on - strand, within GFF1505 at 148.962 kb on + strand, within GFF1505 at 148.971 kb on + strand, within GFF1505 at 148.971 kb on + strand, within GFF1505 at 148.988 kb on + strand, within GFF1505 at 148.988 kb on + strand, within GFF1505 at 148.988 kb on + strand, within GFF1505 at 148.989 kb on - strand, within GFF1505 at 148.989 kb on - strand, within GFF1505 at 149.072 kb on - strand, within GFF1505 at 149.072 kb on - strand, within GFF1505 at 149.079 kb on + strand, within GFF1505 at 149.079 kb on + strand, within GFF1505 at 149.106 kb on + strand at 149.106 kb on + strand at 149.107 kb on - strand at 149.113 kb on + strand at 149.113 kb on + strand at 149.114 kb on - strand at 149.114 kb on - strand at 149.114 kb on - strand at 149.114 kb on - strand at 149.114 kb on - strand at 149.117 kb on + strand at 149.118 kb on - strand at 149.118 kb on - strand at 149.118 kb on - strand at 149.118 kb on - strand at 149.118 kb on - strand at 149.118 kb on - strand at 149.126 kb on + strand at 149.126 kb on + strand at 149.127 kb on - strand at 149.151 kb on - strand at 149.151 kb on - strand at 149.181 kb on - strand at 149.181 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 147,847 + -1.4 147,848 - -0.4 147,891 - GFF1503 0.12 +0.1 147,976 - GFF1503 0.34 +0.5 148,018 + GFF1503 0.45 -1.4 148,124 - GFF1503 0.73 -1.4 148,124 - GFF1503 0.73 -1.1 148,136 + GFF1503 0.76 -1.1 148,140 + GFF1503 0.77 -1.1 148,141 - GFF1503 0.77 -1.9 148,226 + -0.9 148,250 - -0.3 148,252 + -1.1 148,253 - -0.1 148,261 + -1.1 148,261 + -1.7 148,262 - +0.0 148,262 - +0.3 148,262 - -0.3 148,262 - -1.3 148,262 - +0.1 148,262 - +0.0 148,262 - -1.1 148,263 - -1.4 148,291 + -0.9 148,291 + -1.6 148,291 + -0.7 148,292 - +1.2 148,367 + +0.5 148,367 + +0.5 148,367 + -0.9 148,367 + +0.3 148,367 + -1.8 148,367 + -2.0 148,368 - -0.3 148,368 - -1.4 148,368 - +0.1 148,570 + GFF1504 0.48 -0.3 148,602 + GFF1504 0.65 -0.1 148,602 + GFF1504 0.65 -1.1 148,603 - GFF1504 0.65 -0.1 148,761 + GFF1505 0.16 -1.4 148,809 + GFF1505 0.27 -1.1 148,826 + GFF1505 0.31 -0.1 148,865 + GFF1505 0.40 -0.0 148,897 + GFF1505 0.47 -0.7 148,898 - GFF1505 0.47 -1.1 148,962 + GFF1505 0.62 +0.1 148,971 + GFF1505 0.64 -0.5 148,971 + GFF1505 0.64 -0.3 148,988 + GFF1505 0.68 -1.0 148,988 + GFF1505 0.68 +0.5 148,988 + GFF1505 0.68 +0.5 148,989 - GFF1505 0.68 -0.5 148,989 - GFF1505 0.68 +0.4 149,072 - GFF1505 0.87 -0.7 149,072 - GFF1505 0.87 +0.5 149,079 + GFF1505 0.89 -2.7 149,079 + GFF1505 0.89 -0.2 149,106 + -0.7 149,106 + -0.7 149,107 - +1.1 149,113 + -1.1 149,113 + +0.1 149,114 - -0.6 149,114 - +0.3 149,114 - -1.4 149,114 - +0.1 149,114 - -1.1 149,117 + -0.3 149,118 - +1.2 149,118 - +0.2 149,118 - -0.0 149,118 - +0.6 149,118 - -1.0 149,118 - +0.1 149,126 + -1.6 149,126 + -0.4 149,127 - +0.1 149,151 - -0.1 149,151 - -0.1 149,181 - +0.1 149,181 - -1.2
Or see this region's nucleotide sequence