Strain Fitness in Methylophilus sp. DMC18 around GFF133

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF132 and GFF133 are separated by 61 nucleotidesGFF133 and GFF134 are separated by 10 nucleotidesGFF134 and GFF135 are separated by 101 nucleotidesGFF135 and GFF136 are separated by 3 nucleotides GFF132 - Vitamin B12 import ATP-binding protein BtuD, at 136,486 to 137,556 GFF132 GFF133 - hypothetical protein, at 137,618 to 137,959 GFF133 GFF134 - Molybdenum-pterin-binding protein MopA, at 137,970 to 138,398 GFF134 GFF135 - Thiosulfate sulfurtransferase GlpE, at 138,500 to 138,844 GFF135 GFF136 - hypothetical protein, at 138,848 to 139,243 GFF136 Position (kb) 137 138Strain fitness (log2 ratio) -3 -2 -1 0 1at 136.620 kb on + strand, within GFF132at 136.651 kb on + strand, within GFF132at 136.651 kb on + strand, within GFF132at 136.651 kb on + strand, within GFF132at 136.690 kb on + strand, within GFF132at 136.690 kb on + strand, within GFF132at 136.697 kb on + strand, within GFF132at 136.698 kb on - strand, within GFF132at 136.701 kb on + strand, within GFF132at 136.701 kb on + strand, within GFF132at 136.701 kb on + strand, within GFF132at 136.701 kb on + strand, within GFF132at 136.701 kb on + strand, within GFF132at 136.723 kb on + strand, within GFF132at 136.723 kb on + strand, within GFF132at 136.797 kb on + strand, within GFF132at 136.928 kb on + strand, within GFF132at 136.929 kb on - strand, within GFF132at 136.944 kb on - strand, within GFF132at 137.044 kb on + strand, within GFF132at 137.045 kb on - strand, within GFF132at 137.045 kb on - strand, within GFF132at 137.045 kb on - strand, within GFF132at 137.069 kb on + strand, within GFF132at 137.089 kb on - strand, within GFF132at 137.089 kb on - strand, within GFF132at 137.089 kb on - strand, within GFF132at 137.095 kb on - strand, within GFF132at 137.309 kb on + strand, within GFF132at 137.309 kb on + strand, within GFF132at 137.313 kb on + strand, within GFF132at 137.313 kb on + strand, within GFF132at 137.313 kb on + strand, within GFF132at 137.313 kb on + strand, within GFF132at 137.313 kb on + strand, within GFF132at 137.314 kb on - strand, within GFF132at 137.314 kb on - strand, within GFF132at 137.314 kb on - strand, within GFF132at 137.314 kb on - strand, within GFF132at 137.406 kb on - strand, within GFF132at 137.525 kb on + strandat 137.554 kb on + strandat 137.554 kb on + strandat 137.622 kb on + strandat 137.622 kb on + strandat 137.622 kb on + strandat 137.623 kb on - strandat 137.623 kb on - strandat 137.623 kb on - strandat 137.633 kb on + strandat 137.633 kb on + strandat 137.633 kb on + strandat 137.633 kb on + strandat 137.634 kb on - strandat 137.634 kb on - strandat 137.716 kb on + strand, within GFF133at 137.716 kb on + strand, within GFF133at 137.750 kb on - strand, within GFF133at 137.750 kb on - strand, within GFF133at 137.750 kb on - strand, within GFF133at 137.759 kb on + strand, within GFF133at 137.798 kb on - strand, within GFF133at 137.814 kb on + strand, within GFF133at 137.828 kb on + strand, within GFF133at 137.828 kb on + strand, within GFF133at 137.828 kb on + strand, within GFF133at 137.881 kb on + strand, within GFF133at 137.971 kb on + strandat 137.971 kb on + strandat 137.971 kb on + strandat 137.989 kb on - strandat 138.065 kb on + strand, within GFF134at 138.066 kb on - strand, within GFF134at 138.066 kb on - strand, within GFF134at 138.164 kb on + strand, within GFF134at 138.164 kb on + strand, within GFF134at 138.164 kb on + strand, within GFF134at 138.164 kb on + strand, within GFF134at 138.165 kb on - strand, within GFF134at 138.165 kb on - strand, within GFF134at 138.181 kb on + strand, within GFF134at 138.336 kb on + strand, within GFF134at 138.336 kb on + strand, within GFF134at 138.336 kb on + strand, within GFF134at 138.336 kb on + strand, within GFF134at 138.336 kb on + strand, within GFF134at 138.337 kb on - strand, within GFF134at 138.337 kb on - strand, within GFF134at 138.337 kb on - strand, within GFF134at 138.337 kb on - strand, within GFF134at 138.351 kb on + strand, within GFF134at 138.352 kb on - strand, within GFF134at 138.380 kb on + strandat 138.404 kb on + strandat 138.426 kb on + strandat 138.426 kb on + strandat 138.427 kb on - strandat 138.427 kb on - strandat 138.432 kb on + strandat 138.432 kb on + strandat 138.437 kb on + strandat 138.438 kb on - strandat 138.438 kb on - strandat 138.438 kb on - strandat 138.438 kb on - strandat 138.438 kb on - strandat 138.438 kb on - strandat 138.438 kb on - strandat 138.438 kb on - strandat 138.496 kb on + strandat 138.496 kb on + strandat 138.497 kb on - strandat 138.497 kb on - strandat 138.497 kb on - strandat 138.498 kb on + strandat 138.498 kb on + strandat 138.499 kb on - strandat 138.499 kb on - strandat 138.499 kb on - strandat 138.501 kb on + strandat 138.502 kb on - strandat 138.576 kb on + strand, within GFF135at 138.576 kb on + strand, within GFF135at 138.576 kb on + strand, within GFF135at 138.577 kb on - strand, within GFF135at 138.589 kb on - strand, within GFF135at 138.639 kb on + strand, within GFF135at 138.639 kb on + strand, within GFF135at 138.639 kb on + strand, within GFF135at 138.645 kb on + strand, within GFF135at 138.645 kb on + strand, within GFF135at 138.645 kb on + strand, within GFF135at 138.645 kb on + strand, within GFF135at 138.645 kb on + strand, within GFF135at 138.646 kb on - strand, within GFF135at 138.646 kb on - strand, within GFF135at 138.646 kb on - strand, within GFF135at 138.646 kb on - strand, within GFF135at 138.646 kb on - strand, within GFF135at 138.646 kb on - strand, within GFF135at 138.646 kb on - strand, within GFF135at 138.646 kb on - strand, within GFF135at 138.741 kb on + strand, within GFF135at 138.741 kb on + strand, within GFF135at 138.751 kb on + strand, within GFF135at 138.751 kb on + strand, within GFF135at 138.751 kb on + strand, within GFF135at 138.752 kb on - strand, within GFF135at 138.752 kb on - strand, within GFF135at 138.752 kb on - strand, within GFF135at 138.844 kb on + strandat 138.844 kb on + strandat 138.845 kb on - strandat 138.845 kb on - strandat 138.845 kb on - strandat 138.849 kb on + strandat 138.850 kb on - strandat 138.850 kb on - strandat 138.869 kb on + strandat 138.876 kb on + strandat 138.877 kb on - strandat 138.911 kb on + strand, within GFF136at 138.917 kb on + strand, within GFF136at 138.917 kb on + strand, within GFF136at 138.918 kb on - strand, within GFF136

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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136,620 + GFF132 0.13 -0.6
136,651 + GFF132 0.15 -0.7
136,651 + GFF132 0.15 +0.0
136,651 + GFF132 0.15 -1.0
136,690 + GFF132 0.19 -2.0
136,690 + GFF132 0.19 -0.2
136,697 + GFF132 0.20 +1.2
136,698 - GFF132 0.20 -0.3
136,701 + GFF132 0.20 +0.0
136,701 + GFF132 0.20 -1.1
136,701 + GFF132 0.20 -0.6
136,701 + GFF132 0.20 -1.0
136,701 + GFF132 0.20 -0.3
136,723 + GFF132 0.22 -2.0
136,723 + GFF132 0.22 -0.8
136,797 + GFF132 0.29 -0.6
136,928 + GFF132 0.41 -0.8
136,929 - GFF132 0.41 -0.6
136,944 - GFF132 0.43 -1.8
137,044 + GFF132 0.52 -0.6
137,045 - GFF132 0.52 -2.9
137,045 - GFF132 0.52 -1.6
137,045 - GFF132 0.52 -1.0
137,069 + GFF132 0.54 -1.8
137,089 - GFF132 0.56 -0.6
137,089 - GFF132 0.56 -1.0
137,089 - GFF132 0.56 -1.6
137,095 - GFF132 0.57 -1.8
137,309 + GFF132 0.77 +0.4
137,309 + GFF132 0.77 -0.4
137,313 + GFF132 0.77 -0.9
137,313 + GFF132 0.77 -0.0
137,313 + GFF132 0.77 -0.5
137,313 + GFF132 0.77 -1.4
137,313 + GFF132 0.77 +0.6
137,314 - GFF132 0.77 -0.3
137,314 - GFF132 0.77 +0.6
137,314 - GFF132 0.77 -1.1
137,314 - GFF132 0.77 -0.6
137,406 - GFF132 0.86 -1.3
137,525 + -0.7
137,554 + -0.7
137,554 + +0.3
137,622 + -0.0
137,622 + +0.0
137,622 + -1.8
137,623 - +0.6
137,623 - -1.3
137,623 - -0.1
137,633 + -0.0
137,633 + +1.0
137,633 + -0.2
137,633 + -2.7
137,634 - -0.3
137,634 - -0.4
137,716 + GFF133 0.29 -1.6
137,716 + GFF133 0.29 -0.9
137,750 - GFF133 0.39 -1.6
137,750 - GFF133 0.39 -0.9
137,750 - GFF133 0.39 -0.5
137,759 + GFF133 0.41 +0.6
137,798 - GFF133 0.53 -2.0
137,814 + GFF133 0.57 +0.0
137,828 + GFF133 0.61 -1.3
137,828 + GFF133 0.61 -0.6
137,828 + GFF133 0.61 -1.3
137,881 + GFF133 0.77 -1.3
137,971 + -0.6
137,971 + -0.9
137,971 + -2.3
137,989 - +1.3
138,065 + GFF134 0.22 -0.2
138,066 - GFF134 0.22 +0.1
138,066 - GFF134 0.22 -0.3
138,164 + GFF134 0.45 -0.4
138,164 + GFF134 0.45 -1.0
138,164 + GFF134 0.45 -0.1
138,164 + GFF134 0.45 +0.0
138,165 - GFF134 0.45 -0.4
138,165 - GFF134 0.45 +0.0
138,181 + GFF134 0.49 -1.0
138,336 + GFF134 0.85 -0.9
138,336 + GFF134 0.85 -0.6
138,336 + GFF134 0.85 +0.8
138,336 + GFF134 0.85 -0.8
138,336 + GFF134 0.85 +0.1
138,337 - GFF134 0.86 +1.0
138,337 - GFF134 0.86 -0.2
138,337 - GFF134 0.86 -0.7
138,337 - GFF134 0.86 -0.1
138,351 + GFF134 0.89 +0.3
138,352 - GFF134 0.89 +0.0
138,380 + -1.4
138,404 + +0.0
138,426 + -1.1
138,426 + +0.0
138,427 - +0.2
138,427 - -0.7
138,432 + -0.9
138,432 + -0.5
138,437 + +0.0
138,438 - -0.2
138,438 - -1.3
138,438 - -1.1
138,438 - -1.4
138,438 - -1.0
138,438 - +1.0
138,438 - -1.0
138,438 - +0.0
138,496 + -0.4
138,496 + +0.9
138,497 - +1.0
138,497 - -1.3
138,497 - -1.4
138,498 + +0.6
138,498 + +0.5
138,499 - -2.0
138,499 - -1.0
138,499 - +0.5
138,501 + +0.0
138,502 - -2.1
138,576 + GFF135 0.22 -2.1
138,576 + GFF135 0.22 -0.9
138,576 + GFF135 0.22 -1.3
138,577 - GFF135 0.22 -0.9
138,589 - GFF135 0.26 -0.3
138,639 + GFF135 0.40 +1.1
138,639 + GFF135 0.40 -1.0
138,639 + GFF135 0.40 -1.0
138,645 + GFF135 0.42 -0.1
138,645 + GFF135 0.42 -0.2
138,645 + GFF135 0.42 -0.3
138,645 + GFF135 0.42 +0.0
138,645 + GFF135 0.42 -1.1
138,646 - GFF135 0.42 +0.3
138,646 - GFF135 0.42 -0.7
138,646 - GFF135 0.42 +0.6
138,646 - GFF135 0.42 +1.0
138,646 - GFF135 0.42 -0.3
138,646 - GFF135 0.42 -0.1
138,646 - GFF135 0.42 -1.0
138,646 - GFF135 0.42 -0.1
138,741 + GFF135 0.70 +0.4
138,741 + GFF135 0.70 +0.0
138,751 + GFF135 0.73 -0.3
138,751 + GFF135 0.73 +0.0
138,751 + GFF135 0.73 -1.6
138,752 - GFF135 0.73 -1.8
138,752 - GFF135 0.73 +1.0
138,752 - GFF135 0.73 +1.0
138,844 + +0.1
138,844 + +0.8
138,845 - +0.7
138,845 - +0.3
138,845 - -2.0
138,849 + -1.3
138,850 - -0.2
138,850 - -2.4
138,869 + -1.0
138,876 + +0.0
138,877 - -2.0
138,911 + GFF136 0.16 +0.6
138,917 + GFF136 0.17 +0.7
138,917 + GFF136 0.17 -0.3
138,918 - GFF136 0.18 -1.3

Or see this region's nucleotide sequence