Strain Fitness in Methylophilus sp. DMC18 around GFF1293

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1291 and GFF1292 are separated by 46 nucleotidesGFF1292 and GFF1293 are separated by 21 nucleotidesGFF1293 and GFF1294 overlap by 14 nucleotides GFF1291 - 3-hexulose-6-phosphate isomerase, at 549,723 to 550,259 GFF1291 GFF1292 - hypothetical protein, at 550,306 to 550,986 GFF1292 GFF1293 - hypothetical protein, at 551,008 to 552,084 GFF1293 GFF1294 - hypothetical protein, at 552,071 to 553,123 GFF1294 GFF1295 - Aminodeoxychorismate synthase component 1, at 553,081 to 554,565 GFF1295 Position (kb) 551 552 553Strain fitness (log2 ratio) -2 -1 0 1at 550.257 kb on + strandat 550.257 kb on + strandat 550.257 kb on + strandat 550.257 kb on + strandat 550.258 kb on - strandat 550.265 kb on + strandat 550.292 kb on + strandat 550.292 kb on + strandat 550.293 kb on - strandat 550.293 kb on - strandat 550.372 kb on + strandat 550.424 kb on - strand, within GFF1292at 550.424 kb on - strand, within GFF1292at 550.439 kb on + strand, within GFF1292at 550.441 kb on + strand, within GFF1292at 550.442 kb on - strand, within GFF1292at 550.616 kb on - strand, within GFF1292at 550.616 kb on - strand, within GFF1292at 550.616 kb on - strand, within GFF1292at 550.650 kb on - strand, within GFF1292at 550.669 kb on - strand, within GFF1292at 550.669 kb on - strand, within GFF1292at 550.838 kb on - strand, within GFF1292at 550.849 kb on - strand, within GFF1292at 550.849 kb on - strand, within GFF1292at 550.850 kb on + strand, within GFF1292at 550.850 kb on + strand, within GFF1292at 550.851 kb on - strand, within GFF1292at 550.851 kb on - strand, within GFF1292at 550.851 kb on - strand, within GFF1292at 550.851 kb on - strand, within GFF1292at 550.881 kb on + strand, within GFF1292at 550.881 kb on + strand, within GFF1292at 550.881 kb on + strand, within GFF1292at 550.881 kb on + strand, within GFF1292at 550.882 kb on - strand, within GFF1292at 550.933 kb on - strandat 550.933 kb on - strandat 550.961 kb on - strandat 550.961 kb on - strandat 551.007 kb on + strandat 551.008 kb on - strandat 551.008 kb on - strandat 551.016 kb on + strandat 551.047 kb on + strandat 551.047 kb on + strandat 551.160 kb on + strand, within GFF1293at 551.160 kb on + strand, within GFF1293at 551.161 kb on - strand, within GFF1293at 551.161 kb on - strand, within GFF1293at 551.161 kb on - strand, within GFF1293at 551.349 kb on + strand, within GFF1293at 551.379 kb on + strand, within GFF1293at 551.495 kb on - strand, within GFF1293at 551.560 kb on + strand, within GFF1293at 551.606 kb on + strand, within GFF1293at 551.653 kb on + strand, within GFF1293at 551.653 kb on + strand, within GFF1293at 551.653 kb on + strand, within GFF1293at 551.654 kb on - strand, within GFF1293at 551.935 kb on + strand, within GFF1293at 551.935 kb on + strand, within GFF1293at 551.935 kb on + strand, within GFF1293at 551.938 kb on - strand, within GFF1293at 551.993 kb on + strandat 551.994 kb on - strandat 551.996 kb on + strandat 552.008 kb on + strandat 552.070 kb on + strandat 552.083 kb on - strandat 552.104 kb on - strandat 552.183 kb on + strand, within GFF1294at 552.217 kb on + strand, within GFF1294at 552.217 kb on + strand, within GFF1294at 552.217 kb on + strand, within GFF1294at 552.218 kb on - strand, within GFF1294at 552.271 kb on + strand, within GFF1294at 552.271 kb on + strand, within GFF1294at 552.298 kb on - strand, within GFF1294at 552.321 kb on + strand, within GFF1294at 552.321 kb on + strand, within GFF1294at 552.322 kb on - strand, within GFF1294at 552.350 kb on + strand, within GFF1294at 552.371 kb on + strand, within GFF1294at 552.403 kb on + strand, within GFF1294at 552.589 kb on + strand, within GFF1294at 552.589 kb on + strand, within GFF1294at 552.589 kb on + strand, within GFF1294at 552.613 kb on + strand, within GFF1294at 552.613 kb on + strand, within GFF1294at 552.655 kb on + strand, within GFF1294at 552.655 kb on + strand, within GFF1294at 552.655 kb on + strand, within GFF1294at 552.655 kb on + strand, within GFF1294at 552.656 kb on - strand, within GFF1294at 552.695 kb on + strand, within GFF1294at 552.696 kb on - strand, within GFF1294at 552.719 kb on + strand, within GFF1294at 552.724 kb on + strand, within GFF1294at 552.817 kb on + strand, within GFF1294at 552.817 kb on + strand, within GFF1294at 552.817 kb on + strand, within GFF1294at 552.900 kb on + strand, within GFF1294at 552.913 kb on + strand, within GFF1294at 552.913 kb on + strand, within GFF1294at 552.913 kb on + strand, within GFF1294at 553.019 kb on + strandat 553.019 kb on + strandat 553.019 kb on + strandat 553.022 kb on + strandat 553.033 kb on + strandat 553.033 kb on + strandat 553.034 kb on - strandat 553.041 kb on + strandat 553.080 kb on + strandat 553.080 kb on + strandat 553.080 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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550,257 + +0.1
550,257 + -0.3
550,257 + +0.4
550,257 + -0.1
550,258 - -0.0
550,265 + -0.6
550,292 + -1.1
550,292 + -0.3
550,293 - -0.9
550,293 - +0.7
550,372 + -0.1
550,424 - GFF1292 0.17 -0.9
550,424 - GFF1292 0.17 +0.7
550,439 + GFF1292 0.20 -0.9
550,441 + GFF1292 0.20 -0.5
550,442 - GFF1292 0.20 -0.9
550,616 - GFF1292 0.46 -0.9
550,616 - GFF1292 0.46 +0.3
550,616 - GFF1292 0.46 -1.6
550,650 - GFF1292 0.51 -0.3
550,669 - GFF1292 0.53 -1.9
550,669 - GFF1292 0.53 -0.7
550,838 - GFF1292 0.78 -2.4
550,849 - GFF1292 0.80 -1.3
550,849 - GFF1292 0.80 -1.9
550,850 + GFF1292 0.80 -1.3
550,850 + GFF1292 0.80 -0.3
550,851 - GFF1292 0.80 -1.3
550,851 - GFF1292 0.80 +0.1
550,851 - GFF1292 0.80 -1.3
550,851 - GFF1292 0.80 +0.3
550,881 + GFF1292 0.84 -1.1
550,881 + GFF1292 0.84 -0.3
550,881 + GFF1292 0.84 -1.5
550,881 + GFF1292 0.84 -1.6
550,882 - GFF1292 0.85 -0.6
550,933 - -0.3
550,933 - -1.7
550,961 - -1.5
550,961 - -1.3
551,007 + -0.5
551,008 - -1.1
551,008 - -2.0
551,016 + -0.5
551,047 + -1.2
551,047 + +0.1
551,160 + GFF1293 0.14 -0.9
551,160 + GFF1293 0.14 -0.9
551,161 - GFF1293 0.14 +0.1
551,161 - GFF1293 0.14 -1.3
551,161 - GFF1293 0.14 -0.9
551,349 + GFF1293 0.32 -2.1
551,379 + GFF1293 0.34 -0.7
551,495 - GFF1293 0.45 +0.7
551,560 + GFF1293 0.51 -0.4
551,606 + GFF1293 0.56 -0.9
551,653 + GFF1293 0.60 -0.9
551,653 + GFF1293 0.60 +0.5
551,653 + GFF1293 0.60 -1.0
551,654 - GFF1293 0.60 -0.3
551,935 + GFF1293 0.86 -1.9
551,935 + GFF1293 0.86 -2.1
551,935 + GFF1293 0.86 -0.1
551,938 - GFF1293 0.86 -1.3
551,993 + -1.3
551,994 - +0.7
551,996 + -0.4
552,008 + -0.3
552,070 + -0.7
552,083 - -1.9
552,104 - -2.1
552,183 + GFF1294 0.11 -2.1
552,217 + GFF1294 0.14 -0.2
552,217 + GFF1294 0.14 -1.0
552,217 + GFF1294 0.14 -1.2
552,218 - GFF1294 0.14 -1.3
552,271 + GFF1294 0.19 +0.1
552,271 + GFF1294 0.19 -0.7
552,298 - GFF1294 0.22 +0.1
552,321 + GFF1294 0.24 +0.1
552,321 + GFF1294 0.24 -0.7
552,322 - GFF1294 0.24 -1.7
552,350 + GFF1294 0.26 -0.5
552,371 + GFF1294 0.28 -2.5
552,403 + GFF1294 0.32 +0.1
552,589 + GFF1294 0.49 -1.3
552,589 + GFF1294 0.49 -0.3
552,589 + GFF1294 0.49 -0.9
552,613 + GFF1294 0.51 +0.1
552,613 + GFF1294 0.51 -0.4
552,655 + GFF1294 0.55 -0.9
552,655 + GFF1294 0.55 -1.7
552,655 + GFF1294 0.55 -1.5
552,655 + GFF1294 0.55 -1.9
552,656 - GFF1294 0.56 +0.1
552,695 + GFF1294 0.59 -2.4
552,696 - GFF1294 0.59 -0.9
552,719 + GFF1294 0.62 -0.5
552,724 + GFF1294 0.62 -0.9
552,817 + GFF1294 0.71 -1.3
552,817 + GFF1294 0.71 +1.1
552,817 + GFF1294 0.71 -0.7
552,900 + GFF1294 0.79 +0.7
552,913 + GFF1294 0.80 -0.4
552,913 + GFF1294 0.80 -1.5
552,913 + GFF1294 0.80 +0.1
553,019 + -0.8
553,019 + -1.0
553,019 + -1.6
553,022 + -1.3
553,033 + +0.5
553,033 + -0.9
553,034 - -1.3
553,041 + -0.1
553,080 + -2.0
553,080 + -0.4
553,080 + -1.3

Or see this region's nucleotide sequence